pycom16g09860

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
6714413 .. 6714982
570 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09860.1

Sequence Viewer

Length: 570 bp
ATGGCTGAGCTACTCCGCAACCCGGAAAATCTATCACAAGCACAAGCAGAGCTGAAGCAAATCATCGGCAAAGGAAAGCCAGTTGAGGAGTCACACATTGCTCGACTCCCTTACTTACAAGCCATAATCAAAGAAACCTTCAGATTGCACCCAGTCGCTCCATTTTTACTTCCCCGAAAAGCCGAAATAGATGTTGAAATATGCGGGTATATTGTACCAAAAGGTGCACAGGTATTGGTCAATGCATGGGCCATAGGGGGAGACCCCAACATTTGGGACGATCTAAACTCGTTTATGCCGGAGAGGTTTTTGGATTCAGAAATTGATGTTTTAGGAGGAAACTTTGAGCTTATTCCGTTTGGTGGTGGGAGGAGAATATGTCCTGGATTGCCATTGGCAATGAGAATGTTGAATTTGATGTTGGGCTCGCTTATTAACTCGTTTGACGATTGGAAGCTTGAAGATGGAGTTGTACCAGAGACCTTGAACATGGAAGAGAAGTTTGGCATCACCTTAGTGAAAGCTCAGCCTCTCATAGCTATGCCCGTGCTCCACAAATACCTAGCATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

190

Amino Acids

21.06

Weight (kDa)

5.12

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 169 1e-51 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 273
AciI CCGC 2 cut(s) 16, 204
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 2 cut(s) 74, 124
AfaI GTAC 2 cut(s) 216, 474
AfiI CCNNNNNNNGG 3 cut(s) 22, 273, 362
AgsI TTSAA 4 cut(s) 197, 412, 461, 487
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 4 cut(s) 404, 436, 486, 518
AleI CACNNNNGTG 1 cut(s) 515
AluBI AGCT 6 cut(s) 10, 52, 349, 457, 524, 539
AluI AGCT 6 cut(s) 10, 52, 349, 457, 524, 539
Alw21I GWGCWC 2 cut(s) 229, 552
Alw26I GTCTC 2 cut(s) 255, 473
Alw44I GTGCAC 1 cut(s) 225
AoxI GGCC 1 cut(s) 249
ApaLI GTGCAC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 229
BanII GRGCYC 1 cut(s) 428
Bbv12I GWGCWC 2 cut(s) 229, 552
BccI CCATC 1 cut(s) 458
BciT130I CCWGG 1 cut(s) 384
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 255, 473
BfaI CTAG 1 cut(s) 563
BlpI GCTNAGC 2 cut(s) 6, 525
Bme1390I CCNGG 2 cut(s) 23, 384
BmgT120I GGNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 23, 384
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 516
BmuI ACTGGG 1 cut(s) 146
Bpu1102I GCTNAGC 2 cut(s) 6, 525
BpuMI CCSGG 1 cut(s) 23
BsaI GGTCTC 2 cut(s) 255, 473
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 273, 362
Bse1I ACTGG 2 cut(s) 80, 152
Bse3DI GCAATG 2 cut(s) 96, 405
BseBI CCWGG 1 cut(s) 384
BseLI CCNNNNNNNGG 3 cut(s) 22, 273, 362
BseMI GCAATG 2 cut(s) 96, 405
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 2 cut(s) 80, 152
BseRI GAGGAG 2 cut(s) 101, 385
BseSI GKGCMC 1 cut(s) 229
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 2 cut(s) 229, 552
BsiSI CCGG 2 cut(s) 23, 299
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 3 cut(s) 22, 273, 362
BsmAI GTCTC 2 cut(s) 255, 473
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 251
Bso31I GGTCTC 2 cut(s) 255, 473
Bsp1286I GDGCHC 3 cut(s) 229, 428, 552
Bsp143I GATC 1 cut(s) 280
Bsp1720I GCTNAGC 2 cut(s) 6, 525
BspACI CCGC 2 cut(s) 16, 204
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 538
BspTNI GGTCTC 2 cut(s) 255, 473
BsrDI GCAATG 2 cut(s) 96, 405
BsrI ACTGG 2 cut(s) 80, 152
BssMI GATC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 384
Bst6I CTCTTC 1 cut(s) 489
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 3 cut(s) 6, 514, 525
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 2 cut(s) 255, 473
BstMBI GATC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 2 cut(s) 21, 382
BstSLI GKGCMC 1 cut(s) 229
BsuRI GGCC 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 2 cut(s) 215, 473
CviAII CATG 3 cut(s) 246, 490, 567
CviQI GTAC 2 cut(s) 215, 473
DdeI CTNAG 3 cut(s) 6, 514, 525
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 428
Eco31I GGTCTC 2 cut(s) 255, 473
Eco57I CTGAAG 2 cut(s) 74, 124
EcoRII CCWGG 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 428
FaeI CATG 3 cut(s) 249, 493, 570
FaqI GGGAC 1 cut(s) 290
FatI CATG 3 cut(s) 245, 489, 566
FauI CCCGC 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 428
FspBI CTAG 1 cut(s) 563
HaeIII GGCC 1 cut(s) 251
HapII CCGG 2 cut(s) 23, 299
Hin1II CATG 3 cut(s) 249, 493, 570
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 89, 105, 314
HpaII CCGG 2 cut(s) 23, 299
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 143, 319
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 148, 227, 245
HpyF3I CTNAG 3 cut(s) 6, 514, 525
Hsp92II CATG 3 cut(s) 249, 493, 570
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 2 cut(s) 163, 555
LpnPI CCDG 8 cut(s) 36, 93, 165, 215, 312, 369, 396, 489
LweI GCATC 1 cut(s) 516
MaeI CTAG 1 cut(s) 563
MaeIII GTNAC 1 cut(s) 90
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 473, 506
MhlI GDGCHC 3 cut(s) 229, 428, 552
MluCI AATT 2 cut(s) 321, 412
MlyI GAGTC 2 cut(s) 98, 99
MnlI CCTC 5 cut(s) 79, 297, 329, 363, 540
Mph1103I ATGCAT 1 cut(s) 247
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 2 cut(s) 515, 539
MspI CCGG 2 cut(s) 23, 299
MspR9I CCNGG 2 cut(s) 23, 384
MvaI CCWGG 1 cut(s) 384
NciI CCSGG 1 cut(s) 23
NdeII GATC 1 cut(s) 280
NlaIII CATG 3 cut(s) 249, 493, 570
NmuCI GTSAC 1 cut(s) 90
NsiI ATGCAT 1 cut(s) 247
OliI CACNNNNGTG 1 cut(s) 515
PfeI GAWTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 273
PfoI TCCNGGA 1 cut(s) 382
PleI GAGTC 2 cut(s) 97, 99
PpsI GAGTC 2 cut(s) 97, 99
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspPI GGNCC 1 cut(s) 249
RsaI GTAC 2 cut(s) 216, 474
RsaNI GTAC 2 cut(s) 215, 473
RseI CAYNNNNRTG 2 cut(s) 515, 539
SaqAI TTAA 1 cut(s) 435
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 2 cut(s) 98, 99
ScrFI CCNGG 2 cut(s) 23, 384
SduI GDGCHC 3 cut(s) 229, 428, 552
SfaNI GCATC 1 cut(s) 516
SmiMI CAYNNNNRTG 2 cut(s) 515, 539
Sse9I AATT 2 cut(s) 321, 412
SsiI CCGC 2 cut(s) 16, 204
SspMI CTAG 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 21, 382
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 321, 412
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseFI GTSAC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 345
Van91I CCANNNNNTGG 1 cut(s) 273
VneI GTGCAC 1 cut(s) 225
XapI RAATTY 1 cut(s) 412
XspI CTAG 1 cut(s) 563
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.