Rorug04G0073600

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000168
Physical Location & Seq
Reverse (-)
11404867 .. 11407589
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0073600.1

Sequence Viewer

Length: 714 bp
ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTACGTGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGCCAGCTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACACTTCAACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

237

Amino Acids

26.1

Weight (kDa)

5.48

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 38 - 99 5.6e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AcsI RAATTY 1 cut(s) 550
AfaI GTAC 2 cut(s) 352, 595
AfiI CCNNNNNNNGG 3 cut(s) 353, 437, 688
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 2 cut(s) 580, 664
AhlI ACTAGT 2 cut(s) 338, 467
AjnI CCWGG 3 cut(s) 116, 346, 653
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 4 cut(s) 31, 223, 386, 434
AluI AGCT 4 cut(s) 31, 223, 386, 434
Alw26I GTCTC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 2 cut(s) 380, 428
ApeKI GCWGC 2 cut(s) 74, 317
ApoI RAATTY 1 cut(s) 550
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 440, 472
AseI ATTAAT 1 cut(s) 495
Asp700I GAANNNNTTC 3 cut(s) 340, 537, 668
AspS9I GGNCC 3 cut(s) 380, 428, 462
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 643, 703
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 1 cut(s) 462
BaeGI GKGCMC 2 cut(s) 188, 330
BamHI GGATCC 4 cut(s) 147, 359, 407, 440
BanII GRGCYC 1 cut(s) 286
BauI CACGAG 1 cut(s) 206
BbvI GCAGC 2 cut(s) 86, 304
BccI CCATC 4 cut(s) 19, 50, 419, 476
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 3 cut(s) 118, 348, 655
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 2 cut(s) 338, 467
BfaI CTAG 2 cut(s) 339, 468
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 210
BisI GCNGC 2 cut(s) 75, 318
BlsI GCNGC 2 cut(s) 76, 319
Bme1390I CCNGG 4 cut(s) 79, 118, 348, 655
Bme18I GGWCC 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 380, 428, 462
BmiI GGNNCC 9 cut(s) 6, 126, 149, 269, 361, 409, 442, 463, 511
BmrFI CCNGG 4 cut(s) 79, 118, 348, 655
BpmI CTGGAG 2 cut(s) 117, 203
BpuEI CTTGAG 2 cut(s) 137, 306
BpuMI CCSGG 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 437, 688
Bse1I ACTGG 5 cut(s) 229, 358, 400, 529, 591
BseBI CCWGG 3 cut(s) 118, 348, 655
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 2 cut(s) 61, 625
BseLI CCNNNNNNNGG 3 cut(s) 353, 437, 688
BseNI ACTGG 5 cut(s) 229, 358, 400, 529, 591
BseRI GAGGAG 2 cut(s) 656, 659
BseSI GKGCMC 2 cut(s) 188, 330
BseXI GCAGC 2 cut(s) 86, 304
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 2 cut(s) 382, 430
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 3 cut(s) 353, 437, 688
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 2 cut(s) 382, 430
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 3 cut(s) 188, 286, 330
Bsp19I CCATGG 1 cut(s) 330
BspANI GGCC 2 cut(s) 382, 430
BspHI TCATGA 1 cut(s) 710
BspLI GGNNCC 9 cut(s) 6, 126, 149, 269, 361, 409, 442, 463, 511
BsrI ACTGG 5 cut(s) 229, 358, 400, 529, 591
BssECI CCNNGG 1 cut(s) 330
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 3 cut(s) 118, 348, 655
Bst6I CTCTTC 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 384, 432
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 61, 625
BstMAI GTCTC 1 cut(s) 221
BstNI CCWGG 3 cut(s) 118, 348, 655
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 4 cut(s) 77, 116, 346, 653
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 2 cut(s) 188, 330
BstV1I GCAGC 2 cut(s) 86, 304
BstX2I RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BstYI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
BsuRI GGCC 2 cut(s) 382, 430
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 61, 625
Cac8I GCNNGC 2 cut(s) 384, 432
CciI TCATGA 1 cut(s) 710
Cfr13I GGNCC 3 cut(s) 380, 428, 462
Csp6I GTAC 2 cut(s) 351, 594
CviAII CATG 5 cut(s) 239, 331, 684, 688, 711
CviQI GTAC 2 cut(s) 351, 594
DraI TTTAAA 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 285
EcoRII CCWGG 3 cut(s) 116, 346, 653
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 689
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 5 cut(s) 242, 334, 687, 691, 714
FaiI YATR 8 cut(s) 201, 234, 240, 332, 562, 685, 689, 712
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 5 cut(s) 238, 330, 683, 687, 710
Fnu4HI GCNGC 2 cut(s) 75, 318
FokI GGATG 2 cut(s) 68, 612
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 75, 318
FspBI CTAG 2 cut(s) 339, 468
GluI GCNGC 2 cut(s) 75, 318
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 2 cut(s) 117, 203
HaeIII GGCC 2 cut(s) 382, 430
HapII CCGG 1 cut(s) 78
Hin1II CATG 5 cut(s) 242, 334, 687, 691, 714
HinfI GANTC 1 cut(s) 518
HpaII CCGG 1 cut(s) 78
HphI GGTGA 2 cut(s) 643, 703
Hpy166II GTNNAC 1 cut(s) 465
Hpy188III TCNNGA 6 cut(s) 134, 206, 271, 287, 542, 711
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 2 cut(s) 527, 679
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 4 cut(s) 19, 309, 633, 687
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 5 cut(s) 242, 334, 687, 691, 714
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 86, 304
MaeI CTAG 2 cut(s) 339, 468
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 178
MboII GAAGA 2 cut(s) 313, 558
MflI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
MhlI GDGCHC 3 cut(s) 188, 286, 330
MluCI AATT 4 cut(s) 373, 421, 454, 550
Mph1103I ATGCAT 1 cut(s) 689
MroXI GAANNNNTTC 3 cut(s) 340, 537, 668
MseI TTAA 2 cut(s) 495, 548
MspA1I CMGCKG 3 cut(s) 223, 386, 434
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 4 cut(s) 79, 118, 348, 655
MvaI CCWGG 3 cut(s) 118, 348, 655
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 330
NlaIII CATG 5 cut(s) 242, 334, 687, 691, 714
NlaIV GGNNCC 9 cut(s) 6, 126, 149, 269, 361, 409, 442, 463, 511
NsiI ATGCAT 1 cut(s) 689
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 285
PagI TCATGA 1 cut(s) 710
PciI ACATGT 1 cut(s) 238
PdmI GAANNNNTTC 3 cut(s) 340, 537, 668
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 2 cut(s) 76, 319
Ppu21I YACGTR 1 cut(s) 183
PscI ACATGT 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 495
Psp6I CCWGG 3 cut(s) 116, 346, 653
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 3 cut(s) 116, 346, 653
PspN4I GGNNCC 9 cut(s) 6, 126, 149, 269, 361, 409, 442, 463, 511
PspPI GGNCC 3 cut(s) 380, 428, 462
PsuI RGATCY 7 cut(s) 147, 157, 210, 359, 407, 440, 488
PvuII CAGCTG 3 cut(s) 223, 386, 434
RsaI GTAC 2 cut(s) 352, 595
RsaNI GTAC 2 cut(s) 351, 594
SaqAI TTAA 2 cut(s) 495, 548
SatI GCNGC 2 cut(s) 75, 318
Sau96I GGNCC 3 cut(s) 380, 428, 462
ScrFI CCNGG 4 cut(s) 79, 118, 348, 655
SduI GDGCHC 3 cut(s) 188, 286, 330
SetI ASST 7 cut(s) 33, 122, 185, 225, 308, 388, 436
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 462
SlaI CTCGAG 1 cut(s) 285
SmiI ATTTAAAT 1 cut(s) 549
SmlI CTYRAG 3 cut(s) 152, 285, 321
SmoI CTYRAG 3 cut(s) 152, 285, 321
SpeI ACTAGT 2 cut(s) 338, 467
Sse9I AATT 4 cut(s) 373, 421, 454, 550
SspMI CTAG 2 cut(s) 339, 468
StyD4I CCNGG 4 cut(s) 77, 116, 346, 653
StyI CCWWGG 1 cut(s) 330
SwaI ATTTAAAT 1 cut(s) 549
TaiI ACGT 1 cut(s) 185
TaqI TCGA 3 cut(s) 51, 286, 414
TasI AATT 4 cut(s) 373, 421, 454, 550
TatI WGTACW 1 cut(s) 593
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 2 cut(s) 495, 548
Tru9I TTAA 2 cut(s) 495, 548
TseI GCWGC 2 cut(s) 74, 317
TspDTI ATGAA 3 cut(s) 314, 546, 549
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 462
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 1 cut(s) 550
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 3 cut(s) 340, 537, 668
XspI CTAG 2 cut(s) 339, 468
Zsp2I ATGCAT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.