RLG00000007006

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
12649299 .. 12649871
573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007006

Sequence Viewer

Length: 573 bp
ATGGAGTGGGCAATGGCTGAACTACTACGCAACCCAGAAGCCATGTCGAAGGCTCAAGCTGAGCTTGAGGAAGTGATTGAAAAAGGGAAACAAGTTGAGGAATCTGACATTGCTCAGCTCCCTTACTTACAAGCAGTAATCAAAGAAACGGTTCGGTTGCACCCAGTAGCTCCATTGCTTCTTCCACGAAAAGCTGAATCAGATGTAGAAATCGGAGGGTATATTATCCCGAAGGGGGCACAAGTTCTAGTCAATGTTTGGGCCATAGGAAGAGACCCCGACACTTGGGATAACCCCGACTGTTTTAAGCCGGAGAGGTTCTTGGGGTTGGAGAATGAGATTGATGTTATGGGAAGAAACTTTGAGCTTATTCCATTTGGTGGTGGGAGGAGAATTTGTCCAGGGTTGCCTTTAGCAATGAGAATGTTGCAGTTGATGTTGGGGTCTCTTATTAACTGCTTTGATTGGAAGCTTAAAGATGGAGTTGTCCCTGAGACTATGAACATGGAGGAGAAGTTTGGCATCACCTTACAGATGGCTCAGCCTCTTAGAGCTGTGCCCAACAAGTTATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

191

Amino Acids

21.38

Weight (kDa)

4.9

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 174 1.3e-61 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 571
AccB7I CCANNNNNTGG 1 cut(s) 380
AcsI RAATTY 1 cut(s) 393
AfiI CCNNNNNNNGG 3 cut(s) 235, 285, 380
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 400
AluBI AGCT 8 cut(s) 59, 64, 118, 170, 194, 367, 472, 554
AluI AGCT 8 cut(s) 59, 64, 118, 170, 194, 367, 472, 554
Alw26I GTCTC 3 cut(s) 267, 450, 488
AoxI GGCC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 517
BaeGI GKGCMC 2 cut(s) 241, 561
BccI CCATC 2 cut(s) 473, 529
BciT130I CCWGG 1 cut(s) 402
BcoDI GTCTC 3 cut(s) 267, 450, 488
BfaI CTAG 1 cut(s) 248
BlpI GCTNAGC 3 cut(s) 60, 114, 540
Bme1390I CCNGG 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 402
BmrI ACTGGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 531
BmuI ACTGGG 1 cut(s) 158
Bpu1102I GCTNAGC 3 cut(s) 60, 114, 540
BpuEI CTTGAG 2 cut(s) 39, 86
BsaI GGTCTC 2 cut(s) 267, 450
BsaJI CCNNGG 1 cut(s) 401
BsaXI ACNNNNNCTCC 4 cut(s) 382, 412, 500, 530
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 285, 380
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 4 cut(s) 18, 108, 173, 423
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 401
BseLI CCNNNNNNNGG 3 cut(s) 235, 285, 380
BseMI GCAATG 4 cut(s) 18, 108, 173, 423
BseMII CTCAG 4 cut(s) 51, 128, 483, 554
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 403, 524
BseSI GKGCMC 2 cut(s) 241, 561
BshFI GGCC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 3 cut(s) 235, 285, 380
BsmAI GTCTC 3 cut(s) 267, 450, 488
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 1 cut(s) 263
Bso31I GGTCTC 2 cut(s) 267, 450
Bsp1286I GDGCHC 2 cut(s) 241, 561
Bsp1720I GCTNAGC 3 cut(s) 60, 114, 540
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 4 cut(s) 52, 127, 484, 553
BspTNI GGTCTC 2 cut(s) 267, 450
BsrDI GCAATG 4 cut(s) 18, 108, 173, 423
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 151, 302
Bst6I CTCTTC 1 cut(s) 265
BstDEI CTNAG 5 cut(s) 60, 114, 492, 540, 548
BstMAI GTCTC 3 cut(s) 267, 450, 488
BstNI CCWGG 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 400
BstSLI GKGCMC 2 cut(s) 241, 561
BsuRI GGCC 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 261
CviAII CATG 2 cut(s) 43, 505
DdeI CTNAG 5 cut(s) 60, 114, 492, 540, 548
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco31I GGTCTC 2 cut(s) 267, 450
EcoRII CCWGG 1 cut(s) 400
FaeI CATG 2 cut(s) 46, 508
FaiI YATR 7 cut(s) 44, 222, 266, 350, 500, 506, 571
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 1 cut(s) 473
FatI CATG 2 cut(s) 42, 504
FspBI CTAG 1 cut(s) 248
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 311
Hin1II CATG 2 cut(s) 46, 508
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 2 cut(s) 101, 197
HpaII CCGG 1 cut(s) 311
HphI GGTGA 1 cut(s) 517
Hpy188I TCNGA 3 cut(s) 106, 202, 215
Hpy188III TCNNGA 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 43, 226
HpyCH4III ACNGT 2 cut(s) 151, 302
HpyCH4V TGCA 2 cut(s) 160, 430
HpyF3I CTNAG 5 cut(s) 60, 114, 492, 540, 548
Hsp92II CATG 2 cut(s) 46, 508
LmnI GCTCC 2 cut(s) 123, 175
LpnPI CCDG 6 cut(s) 48, 177, 324, 387, 414, 504
LweI GCATC 1 cut(s) 531
MaeI CTAG 1 cut(s) 248
MboII GAAGA 3 cut(s) 173, 282, 366
MhlI GDGCHC 2 cut(s) 241, 561
MluCI AATT 1 cut(s) 393
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 7 cut(s) 61, 91, 209, 309, 381, 502, 555
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 3 cut(s) 306, 453, 474
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
NlaIII CATG 2 cut(s) 46, 508
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 101, 197
PflMI CCANNNNNTGG 1 cut(s) 380
PsiI TTATAA 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 400
PspGI CCWGG 1 cut(s) 400
PspPI GGNCC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 306, 453, 474
Sau96I GGNCC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 2 cut(s) 241, 561
SfaNI GCATC 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 54, 65
SmoI CTYRAG 2 cut(s) 54, 65
Sse9I AATT 1 cut(s) 393
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 400
TaaI ACNGT 2 cut(s) 151, 302
TaqI TCGA 1 cut(s) 47
TasI AATT 1 cut(s) 393
TfiI GAWTC 2 cut(s) 101, 197
Tru1I TTAA 3 cut(s) 306, 453, 474
Tru9I TTAA 3 cut(s) 306, 453, 474
TspDTI ATGAA 1 cut(s) 515
Van91I CCANNNNNTGG 1 cut(s) 380
XapI RAATTY 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.