Rh7CG340300

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000168
Physical Location & Seq
Reverse (-)
38085738 .. 38088616
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG340300.1

Sequence Viewer

Length: 909 bp
ATGGATCTCTTGAATTGTATAATATGTCTTTCTTTTGCTTGGATCACCATCCAATCCGCGTATTTCCTTGCCAGAAGAAGCAAAGCAATTCCAAGAACTAGGCTTCCACCAGGACCAAAGCCATTTCCATTGATTGGGAATCTGTTTGAGATCGGTGACAAACCCCATCTCTCCCTCACTAAGCTTTCCCAGCGCTATGGCCCCATAATGAGTTTGCAGCTGGGCCAATTAACCACAATCGTAGTTTCTTCAACGACTTTGGCCAAAGAAATCCTCCGAACCCATGACCAAGTGTTCTGCAACCGAACCCTCCCAGAGGCAATCCACGCCTGCAAACACAGCGAGTACAGCATGGCTTGGGTTCCCGTATCAGCAAGATGGAGAAATCTTCGCACAATATGCAACTTGCAATTGTTTGCCCCCAAAGTTCTTGATGCTAACCAAGCCAAACGGCGGGTAAAGGTGCAAAAGCTCATAGATGATGTCAATGAATGCATGAGGGCCGGTGAGGCAGTGGATATCGGAAGGGCTGTTTTCTCAACCACACTCAATTTGTTGTCACAAACTATCTTCTCTGTGGATTTAGCTGACCCGAGTAGCAAGACAACTAGGGAGTTCAAGGAGACTGTTTGGGGTATGATGGAAGAGATAGGAAAACCAAACTTGGCAGATTATTTTCCTTTTCTTAGGAAGCTTGATCCGCAAGGCATAAGGCGGCGGTTGACCCATTACTTCCAAATTACAGTAGACATGTTTGATCGAATGATCCATCAAAGGTTGGAATCAAGAAAACGGGATGGTTATATCTCAACCAATGATATGTTGGATACACTTCTGAATATCAATGAAGACAAAATGGAGGATATGGACATGCCTGAAACTCAACATTTATTTCTGGTTAGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

302

Amino Acids

34.75

Weight (kDa)

9.0

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 294 4.1e-32 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AccI GTMKAC 1 cut(s) 747
AccII CGCG 1 cut(s) 59
AciI CCGC 5 cut(s) 57, 454, 701, 715, 718
AclWI GGATC 4 cut(s) 12, 50, 692, 760
AcoI YGGCCR 1 cut(s) 261
AfaI GTAC 1 cut(s) 347
AfeI AGCGCT 1 cut(s) 194
AfiI CCNNNNNNNGG 3 cut(s) 134, 316, 453
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 3 cut(s) 13, 252, 619
AjnI CCWGG 1 cut(s) 109
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
AluBI AGCT 5 cut(s) 184, 220, 472, 587, 694
AluI AGCT 5 cut(s) 184, 220, 472, 587, 694
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 4 cut(s) 12, 50, 692, 760
Ama87I CYCGRG 1 cut(s) 592
Aor51HI AGCGCT 1 cut(s) 194
AoxI GGCC 4 cut(s) 199, 223, 261, 501
ApeKI GCWGC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 4 cut(s) 113, 200, 223, 501
AsuHPI GGTGA 3 cut(s) 37, 167, 518
AvaI CYCGRG 1 cut(s) 592
AvaII GGWCC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 855
BbvI GCAGC 1 cut(s) 229
BccI CCATC 6 cut(s) 56, 174, 372, 634, 777, 791
BceAI ACGGC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 820
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 2 cut(s) 99, 609
BfoI RGCGCY 1 cut(s) 196
BfuI GTATCC 1 cut(s) 820
BglI GCCNNNNNGGC 1 cut(s) 509
BisI GCNGC 2 cut(s) 218, 716
BlsI GCNGC 2 cut(s) 219, 717
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 592
BmgT120I GGNCC 4 cut(s) 113, 200, 223, 501
BmiI GGNNCC 2 cut(s) 202, 363
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 855
BsaBI GATNNNNATC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 316, 453
Bse118I RCCGGY 1 cut(s) 503
Bse8I GATNNNNATC 1 cut(s) 47
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 48, 802
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 3 cut(s) 134, 316, 453
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 2 cut(s) 189, 220
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 4 cut(s) 201, 225, 263, 503
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 1 cut(s) 504
BslI CCNNNNNNNGG 3 cut(s) 134, 316, 453
BsmAI GTCTC 1 cut(s) 617
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 4 cut(s) 201, 225, 263, 503
BsoBI CYCGRG 1 cut(s) 592
Bsp143I GATC 6 cut(s) 4, 42, 150, 697, 757, 765
BspACI CCGC 5 cut(s) 57, 454, 701, 715, 718
BspANI GGCC 4 cut(s) 201, 225, 263, 503
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 2 cut(s) 202, 363
BspPI GGATC 4 cut(s) 12, 50, 692, 760
BsrFI RCCGGY 1 cut(s) 503
BssAI RCCGGY 1 cut(s) 503
BssMI GATC 6 cut(s) 4, 42, 150, 697, 757, 765
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 628, 745
Bst6I CTCTTC 1 cut(s) 639
BstAPI GCANNNNNTGC 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 2 cut(s) 180, 686
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 48, 802
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 6 cut(s) 7, 45, 153, 700, 760, 768
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 6 cut(s) 4, 42, 150, 697, 757, 765
BstMWI GCNNNNNNNGC 8 cut(s) 190, 326, 339, 348, 399, 443, 509, 700
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 2 cut(s) 754, 874
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 820
BsuRI GGCC 4 cut(s) 201, 225, 263, 503
BtsCI GGATG 2 cut(s) 48, 802
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 1 cut(s) 331
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 4 cut(s) 113, 200, 223, 501
Csp6I GTAC 1 cut(s) 346
CviAII CATG 5 cut(s) 284, 352, 496, 751, 871
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 180, 686
DpnI GATC 6 cut(s) 6, 44, 152, 699, 759, 767
DpnII GATC 6 cut(s) 4, 42, 150, 697, 757, 765
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco32I GATATC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 113
Eco47III AGCGCT 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 592
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 109
EcoRV GATATC 1 cut(s) 520
EcoT22I ATGCAT 1 cut(s) 497
FaeI CATG 5 cut(s) 287, 355, 499, 754, 874
FatI CATG 5 cut(s) 283, 351, 495, 750, 870
FauI CCCGC 1 cut(s) 447
FblI GTMKAC 1 cut(s) 747
Fnu4HI GCNGC 2 cut(s) 218, 716
FokI GGATG 2 cut(s) 35, 809
Fsp4HI GCNGC 2 cut(s) 218, 716
FspBI CTAG 2 cut(s) 99, 609
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 218, 716
GsaI CCCAGC 2 cut(s) 193, 224
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 4 cut(s) 201, 225, 263, 503
HapII CCGG 1 cut(s) 504
HhaI GCGC 1 cut(s) 195
Hin1II CATG 5 cut(s) 287, 355, 499, 754, 874
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 723
HindII GTYRAC 1 cut(s) 723
HindIII AAGCTT 2 cut(s) 182, 692
HinfI GANTC 2 cut(s) 139, 782
HpaII CCGG 1 cut(s) 504
HphI GGTGA 3 cut(s) 37, 167, 518
Hpy166II GTNNAC 2 cut(s) 723, 748
Hpy188I TCNGA 3 cut(s) 278, 524, 837
Hpy188III TCNNGA 3 cut(s) 10, 431, 786
Hpy8I GTNNAC 2 cut(s) 723, 748
HpyAV CCTTC 1 cut(s) 519
HpyCH4III ACNGT 2 cut(s) 628, 745
HpyCH4V TGCA 7 cut(s) 217, 300, 333, 402, 409, 466, 495
HpyF10VI GCNNNNNNNGC 8 cut(s) 190, 326, 339, 348, 399, 443, 509, 700
HpyF3I CTNAG 2 cut(s) 180, 686
Hsp92II CATG 5 cut(s) 287, 355, 499, 754, 874
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 6 cut(s) 4, 42, 150, 697, 757, 765
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 424
MaeI CTAG 2 cut(s) 99, 609
MaeIII GTNAC 2 cut(s) 155, 558
MalI GATC 6 cut(s) 6, 44, 152, 699, 759, 767
MboI GATC 6 cut(s) 4, 42, 150, 697, 757, 765
MboII GAAGA 6 cut(s) 87, 240, 380, 562, 656, 860
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 6 cut(s) 13, 87, 227, 410, 550, 738
MluNI TGGCCA 1 cut(s) 263
MmeI TCCRAC 2 cut(s) 759, 804
MnlI CCTC 7 cut(s) 185, 284, 310, 320, 492, 502, 853
Mox20I TGGCCA 1 cut(s) 263
Mph1103I ATGCAT 1 cut(s) 497
MscI TGGCCA 1 cut(s) 263
MseI TTAA 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 1 cut(s) 111
MunI CAATTG 1 cut(s) 410
Mva1269I GAATGC 1 cut(s) 497
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 8 cut(s) 190, 326, 339, 348, 399, 443, 509, 700
NdeII GATC 6 cut(s) 4, 42, 150, 697, 757, 765
NlaIII CATG 5 cut(s) 287, 355, 499, 754, 874
NlaIV GGNNCC 2 cut(s) 202, 363
NmuCI GTSAC 2 cut(s) 155, 558
NsiI ATGCAT 1 cut(s) 497
NspI RCATGY 2 cut(s) 754, 874
PciI ACATGT 1 cut(s) 750
PctI GAATGC 1 cut(s) 497
PfeI GAWTC 2 cut(s) 139, 782
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 2 cut(s) 219, 717
PscI ACATGT 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 109
PspFI CCCAGC 2 cut(s) 189, 220
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 202, 363
PspPI GGNCC 4 cut(s) 113, 200, 223, 501
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 220
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 2 cut(s) 218, 716
Sau3AI GATC 6 cut(s) 4, 42, 150, 697, 757, 765
Sau96I GGNCC 4 cut(s) 113, 200, 223, 501
ScrFI CCNGG 1 cut(s) 111
SetI ASST 7 cut(s) 186, 222, 465, 474, 589, 696, 779
SfaNI GCATC 1 cut(s) 424
SinI GGWCC 1 cut(s) 113
Sse9I AATT 6 cut(s) 13, 87, 227, 410, 550, 738
SsiI CCGC 5 cut(s) 57, 454, 701, 715, 718
SspMI CTAG 2 cut(s) 99, 609
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 628, 745
TaqI TCGA 1 cut(s) 760
TasI AATT 6 cut(s) 13, 87, 227, 410, 550, 738
TatI WGTACW 1 cut(s) 345
TauI GCSGC 1 cut(s) 718
TfiI GAWTC 2 cut(s) 139, 782
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 519
TseFI GTSAC 2 cut(s) 155, 558
TseI GCWGC 1 cut(s) 217
Tsp45I GTSAC 2 cut(s) 155, 558
TspDTI ATGAA 2 cut(s) 504, 861
TspRI CASTG 1 cut(s) 519
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 113
XagI CCTNNNNNAGG 1 cut(s) 314
XceI RCATGY 2 cut(s) 754, 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 747
XspI CTAG 2 cut(s) 99, 609
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.