Rorug04G0251600

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
42464014 .. 42464705
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0251600.1

Sequence Viewer

Length: 543 bp
ATGAGTGGTCCATGGAGTTTCAATAGTAAATTCATTGAATTGGACCAAAAGCTTTTTGATGCAACTGGAGAGATTAGGGTTAGGGTTTCACATGCAATTTCGAAACCTTTTTTCATGCAAAAAACCCTAAAGTTCGCCAAAGGGATTGAGCAAGAGGTTCACTTCTTCTTTGAAAACCTCGTGGGCAAATGCAAGACATGTCAGCGTATGTATCATGAGGGAGAAGCATGCAATGGTGAAACTGCAACTCCACCGGTCACTACTACCCCATCACCGGCGGCAAGAAAACTAGAGCTCAATGGCTCATTTTTAGGGTTTTCAAGAAATCAATTCAAGAATGGAATGTTTCACTTCCAAGGTCTCACTACCCCTATTCTTCCGCCGATTGGAAGGTCTTTGTTTGGAGGAGCTGAGACAAGTAGGGTACGCAAACCTATTGTTATTCGTAGTGCAGAAAAAAGACAGGCGACGGACAGCAATGAGTTGACTTTGGTACCCGTGGACACCGACCTGCAAGCAAAGAGAGACCGGTCATTTCCTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

180

Amino Acids

20.21

Weight (kDa)

9.54

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 519
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 493
AciI CCGC 2 cut(s) 278, 380
AcsI RAATTY 1 cut(s) 29
AfaI GTAC 2 cut(s) 426, 495
AfiI CCNNNNNNNGG 2 cut(s) 274, 386
AflIII ACRYGT 1 cut(s) 197
AgeI ACCGGT 2 cut(s) 253, 528
AgsI TTSAA 5 cut(s) 22, 38, 173, 321, 334
AluBI AGCT 3 cut(s) 52, 295, 410
AluI AGCT 3 cut(s) 52, 295, 410
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 3 cut(s) 365, 407, 519
ApoI RAATTY 1 cut(s) 29
AsiGI ACCGGT 2 cut(s) 253, 528
Asp718I GGTACC 1 cut(s) 493
AspS9I GGNCC 2 cut(s) 8, 43
AsuHPI GGTGA 2 cut(s) 248, 264
AsuII TTCGAA 1 cut(s) 101
AvaII GGWCC 2 cut(s) 8, 43
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 297
BauI CACGAG 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 297
BccI CCATC 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 365, 407, 519
BfaI CTAG 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 519
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme18I GGWCC 2 cut(s) 8, 43
BmgT120I GGNCC 2 cut(s) 8, 43
BmiI GGNNCC 1 cut(s) 495
BmsI GCATC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 101
BsaI GGTCTC 2 cut(s) 365, 519
BsaJI CCNNGG 3 cut(s) 11, 355, 498
BsaWI WCCGGW 2 cut(s) 253, 528
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 386
Bse118I RCCGGY 3 cut(s) 253, 274, 528
Bse1I ACTGG 1 cut(s) 70
Bse3DI GCAATG 2 cut(s) 238, 484
BseDI CCNNGG 3 cut(s) 11, 355, 498
BseLI CCNNNNNNNGG 2 cut(s) 274, 386
BseMI GCAATG 2 cut(s) 238, 484
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 420
BsgI GTGCAG 1 cut(s) 471
BshNI GGYRCC 1 cut(s) 493
BshTI ACCGGT 2 cut(s) 253, 528
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 3 cut(s) 254, 275, 529
BslI CCNNNNNNNGG 2 cut(s) 274, 386
BsmAI GTCTC 3 cut(s) 365, 407, 519
Bso31I GGTCTC 2 cut(s) 365, 519
Bsp119I TTCGAA 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 11
BspACI CCGC 2 cut(s) 278, 380
BspCNI CTCAG 1 cut(s) 403
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 495
BspMI ACCTGC 1 cut(s) 519
BspT104I TTCGAA 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 493
BspTNI GGTCTC 2 cut(s) 365, 519
BsrDI GCAATG 2 cut(s) 238, 484
BsrFI RCCGGY 3 cut(s) 253, 274, 528
BsrI ACTGG 1 cut(s) 70
BssAI RCCGGY 3 cut(s) 253, 274, 528
BssECI CCNNGG 3 cut(s) 11, 355, 498
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 2 cut(s) 11, 355
Bst2BI CACGAG 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 229, 516
BstDEI CTNAG 1 cut(s) 411
BstDSI CCRYGG 2 cut(s) 11, 498
BstMAI GTCTC 3 cut(s) 365, 407, 519
BstNSI RCATGY 3 cut(s) 95, 201, 231
BtgI CCRYGG 2 cut(s) 11, 498
BveI ACCTGC 1 cut(s) 519
Cac8I GCNNGC 2 cut(s) 229, 516
CciI TCATGA 1 cut(s) 214
Cfr10I RCCGGY 3 cut(s) 253, 274, 528
Cfr13I GGNCC 2 cut(s) 8, 43
Csp6I GTAC 2 cut(s) 425, 494
CspAI ACCGGT 2 cut(s) 253, 528
CviAII CATG 6 cut(s) 12, 92, 115, 198, 215, 228
CviJI RGCY 4 cut(s) 52, 295, 303, 410
CviKI_1 RGCY 4 cut(s) 52, 295, 303, 410
CviQI GTAC 2 cut(s) 425, 494
DdeI CTNAG 1 cut(s) 411
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 11, 355
Eco24I GRGCYC 1 cut(s) 297
Eco31I GGTCTC 2 cut(s) 365, 519
Eco47I GGWCC 2 cut(s) 8, 43
Eco53kI GAGCTC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 295
EcoT14I CCWWGG 2 cut(s) 11, 355
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 2 cut(s) 11, 355
FaeI CATG 6 cut(s) 15, 95, 118, 201, 218, 231
FaiI YATR 7 cut(s) 13, 93, 116, 199, 209, 216, 229
FatI CATG 6 cut(s) 11, 91, 114, 197, 214, 227
Fnu4HI GCNGC 1 cut(s) 279
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 290
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 3 cut(s) 254, 275, 529
Hin1II CATG 6 cut(s) 15, 95, 118, 201, 218, 231
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HindIII AAGCTT 1 cut(s) 50
HpaII CCGG 3 cut(s) 254, 275, 529
HphI GGTGA 2 cut(s) 248, 264
Hpy166II GTNNAC 3 cut(s) 160, 486, 502
Hpy188III TCNNGA 3 cut(s) 215, 321, 334
Hpy8I GTNNAC 3 cut(s) 160, 486, 502
Hpy99I CGWCG 1 cut(s) 472
HpyAV CCTTC 1 cut(s) 384
HpyCH4V TGCA 8 cut(s) 62, 95, 118, 192, 231, 245, 452, 514
HpyF3I CTNAG 1 cut(s) 411
Hsp92II CATG 6 cut(s) 15, 95, 118, 201, 218, 231
KpnI GGTACC 1 cut(s) 497
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 5 cut(s) 51, 267, 288, 449, 524
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 256
MboII GAAGA 2 cut(s) 157, 368
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 4 cut(s) 29, 38, 96, 329
MnlI CCTC 4 cut(s) 148, 188, 211, 398
MseI TTAA 1 cut(s) 541
MspI CCGG 3 cut(s) 254, 275, 529
NcoI CCATGG 1 cut(s) 11
NlaIII CATG 6 cut(s) 15, 95, 118, 201, 218, 231
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 3 cut(s) 95, 201, 231
NspV TTCGAA 1 cut(s) 101
PaeI GCATGC 1 cut(s) 231
PagI TCATGA 1 cut(s) 214
PciI ACATGT 1 cut(s) 197
PinAI ACCGGT 2 cut(s) 253, 528
PkrI GCNGC 1 cut(s) 280
PscI ACATGT 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 2 cut(s) 8, 43
RsaI GTAC 2 cut(s) 426, 495
RsaNI GTAC 2 cut(s) 425, 494
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 541
SatI GCNGC 1 cut(s) 279
Sau96I GGNCC 2 cut(s) 8, 43
SduI GDGCHC 1 cut(s) 297
SfaNI GCATC 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 101
SgrAI CRCCGGYG 1 cut(s) 274
SinI GGWCC 2 cut(s) 8, 43
SphI GCATGC 1 cut(s) 231
Sse9I AATT 4 cut(s) 29, 38, 96, 329
SsiI CCGC 2 cut(s) 278, 380
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 1 cut(s) 297
StyI CCWWGG 2 cut(s) 11, 355
TaqI TCGA 1 cut(s) 101
TasI AATT 4 cut(s) 29, 38, 96, 329
TauI GCSGC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 541
Tru9I TTAA 1 cut(s) 541
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 22, 103
TspGWI ACGGA 1 cut(s) 485
VpaK11BI GGWCC 2 cut(s) 8, 43
XapI RAATTY 1 cut(s) 29
XceI RCATGY 3 cut(s) 95, 201, 231
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.