Rmu_sc0007069.1_g000002

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007069.1
OG0000168
Physical Location & Seq
Forward (+)
3500 .. 4219
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007069.1_g000002.1.cds

Sequence Viewer

Length: 720 bp
atggccaaagaaatcctccgaaccaatgaccaactcttttgcaaccgaacaatcccagatgcgttgcgagacataggagactacagcttgccttggataccagtatcaacaaggtggagaaatcttcgaaaaatatgcacctcccgcctcttccacaccaaagtacttgatgacaaccaagaaaaccggcgagtgaaagtgcaagagctcatagctagtgtcaatgacagcatggtgaagggtttggcaatagatattggaaaggctgctttcaaaactacactcaatttgctgtcgagaactattttctcggtggatttggctgatgactcgagtagtagtagtgagatgactagagagttcaagaagattgttaatggtatcgtggaagaggctgggaagccgaatttgggggactattttcctgtgattaggaagattgatccccaaggcataaggcggcgctttacgaattattacaacaagatgttaggcttgattgaatcagtgatcagtcaaaggttggaatgtagaaaaggggttgattatgtaacaagtaatgatatgttggatgctcttataagcctcagtgaagagaaaaatgaggaggatttgaagaactccgaagttgttgaacacttgtttgtggttagtttctactttctactccctatctactactttctgttcttcttggatattcacttcaatgattgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

239

Amino Acids

27.67

Weight (kDa)

6.0

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AciI CCGC 2 cut(s) 145, 460
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 406
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 410
AgsI TTSAA 6 cut(s) 274, 364, 503, 616, 635, 709
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 3 cut(s) 87, 208, 215
AluI AGCT 3 cut(s) 87, 208, 215
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 2 cut(s) 63, 72
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 406
AspLEI GCGC 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 247
AsuII TTCGAA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 331
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 253
BcgI CGANNNNNNTGC 2 cut(s) 117, 151
BciVI GTATCC 1 cut(s) 90
BclI TGATCA 1 cut(s) 510
BcoDI GTCTC 2 cut(s) 63, 72
BfaI CTAG 3 cut(s) 216, 354, 718
BfmI CTRYAG 1 cut(s) 82
BfoI RGCGCY 1 cut(s) 466
BfuI GTATCC 1 cut(s) 90
BisI GCNGC 2 cut(s) 267, 461
BlsI GCNGC 2 cut(s) 268, 462
BmcAI AGTACT 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 331
BmsI GCATC 2 cut(s) 49, 562
Bpu14I TTCGAA 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 92, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 92, 448
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 601
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 395
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 2 cut(s) 63, 72
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 331
Bsp119I TTCGAA 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 442, 510
BspACI CCGC 2 cut(s) 145, 460
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 600
BspPI GGATC 1 cut(s) 437
BspT104I TTCGAA 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 92, 448
BssMI GATC 2 cut(s) 442, 510
BssT1I CCWWGG 2 cut(s) 92, 448
Bst6I CTCTTC 3 cut(s) 155, 384, 588
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 587
BstF5I GGATG 1 cut(s) 577
BstH2I RGCGCY 1 cut(s) 466
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 2 cut(s) 445, 513
BstMAI GTCTC 2 cut(s) 63, 72
BstMBI GATC 2 cut(s) 442, 510
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 253
BsuI GTATCC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 2 cut(s) 513, 595
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 186
Csp6I GTAC 1 cut(s) 164
CviAII CATG 1 cut(s) 232
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 587
DpnI GATC 2 cut(s) 444, 512
DpnII GATC 2 cut(s) 442, 510
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 155, 384, 588
EarI CTCTTC 3 cut(s) 155, 384, 588
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 92, 448
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 92, 448
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 2 cut(s) 92, 448
FaeI CATG 1 cut(s) 235
FaiI YATR 8 cut(s) 74, 136, 212, 233, 455, 549, 566, 581
FaqI GGGAC 1 cut(s) 428
FatI CATG 1 cut(s) 231
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 510
Fnu4HI GCNGC 2 cut(s) 267, 461
FokI GGATG 1 cut(s) 584
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 267, 461
FspBI CTAG 3 cut(s) 216, 354, 718
GlaI GCGC 1 cut(s) 464
GluI GCNGC 2 cut(s) 267, 461
GsaI CCCAGC 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 466
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 465
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HinfI GANTC 2 cut(s) 329, 503
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 2 cut(s) 20, 625
Hpy188III TCNNGA 2 cut(s) 297, 364
HpyAV CCTTC 1 cut(s) 232
HpyCH4V TGCA 3 cut(s) 42, 138, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 587
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 1 cut(s) 463
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 2 cut(s) 442, 510
LpnPI CCDG 5 cut(s) 69, 114, 200, 381, 438
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 2 cut(s) 49, 562
MaeI CTAG 3 cut(s) 216, 354, 718
MaeIII GTNAC 1 cut(s) 550
MalI GATC 2 cut(s) 444, 512
MboI GATC 2 cut(s) 442, 510
MboII GAAGA 8 cut(s) 116, 142, 379, 401, 448, 605, 628, 682
MhlI GDGCHC 1 cut(s) 210
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 286, 406, 472
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 2 cut(s) 504, 549
MnlI CCTC 7 cut(s) 26, 151, 158, 385, 596, 598, 601
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 708
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 2 cut(s) 442, 510
NlaIII CATG 1 cut(s) 235
NspV TTCGAA 1 cut(s) 127
PaeR7I CTCGAG 1 cut(s) 331
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 2 cut(s) 268, 462
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PsiI TTATAA 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 395
PspXI VCTCGAGB 1 cut(s) 331
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 708
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 267, 461
Sau3AI GATC 2 cut(s) 442, 510
ScaI AGTACT 1 cut(s) 165
SchI GAGTC 1 cut(s) 323
SduI GDGCHC 1 cut(s) 210
SetI ASST 6 cut(s) 89, 116, 143, 210, 217, 524
SfaNI GCATC 2 cut(s) 49, 562
SfcI CTRYAG 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 331
SfuI TTCGAA 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 708
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 3 cut(s) 286, 406, 472
SsiI CCGC 2 cut(s) 145, 460
SspMI CTAG 3 cut(s) 216, 354, 718
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 2 cut(s) 92, 448
TaqI TCGA 3 cut(s) 127, 296, 332
TasI AATT 3 cut(s) 286, 406, 472
TatI WGTACW 1 cut(s) 163
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 2 cut(s) 513, 595
TseI GCWGC 1 cut(s) 266
TspRI CASTG 2 cut(s) 513, 595
XapI RAATTY 1 cut(s) 406
XhoI CTCGAG 1 cut(s) 331
XspI CTAG 3 cut(s) 216, 354, 718
ZrmI AGTACT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.