Rmu_ssc0000487.1_g000004

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000487.1
OG0000168
Physical Location & Seq
Reverse (-)
6311 .. 6871
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000487.1_g000004.1.cds

Sequence Viewer

Length: 561 bp
atggctaagaaactacgcaacccaaaaatactttcaaaagctcaagcggaactccagcaagtgattggaaaggcgaaagtagttgaggaatcagacattgctcgactcccttacttacaagcaataatcaaagaaacatttcgggtgcacccaacagctccattgctgcttccccagaaagcagaagcaaacatagaaattggtgggtatgtgatcccaaagggtgctcaagttctaataaatgtttgggccataggtaaagaccccatcactttggaaaacccaaatctgtttaagccggagaggttcttgggattagaaaatcaaattgatgttgtgggaaaaaacttcgagcttattccgtttggtggtgggagaagaatatgtcccggacgtccattggcaataagaatgttacacttgatgctgggttcactaattaactactttgattggaatcttgaagatggagttgtacccgaaactatgaacatggcagagaagtttagccttaccttacaaatggcacagccactaagagttgtgcccaagaagtcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

186

Amino Acids

20.79

Weight (kDa)

9.49

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 397
AciI CCGC 1 cut(s) 47
AclWI GGATC 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 2 cut(s) 36, 464
AjuI GAANNNNNNNTTGG 2 cut(s) 16, 48
AluBI AGCT 3 cut(s) 41, 158, 355
AluI AGCT 3 cut(s) 41, 158, 355
Alw21I GWGCWC 2 cut(s) 150, 229
Alw44I GTGCAC 1 cut(s) 146
AlwI GGATC 1 cut(s) 208
AoxI GGCC 1 cut(s) 249
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 390
BaeGI GKGCMC 2 cut(s) 150, 549
Bbv12I GWGCWC 2 cut(s) 150, 229
BbvI GCAGC 1 cut(s) 153
BccI CCATC 2 cut(s) 275, 461
BcnI CCSGG 1 cut(s) 390
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 2 cut(s) 27, 213
BpuMI CCSGG 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse3DI GCAATG 2 cut(s) 96, 161
Bse8I GATNNNNATC 1 cut(s) 456
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 2 cut(s) 96, 161
BseSI GKGCMC 2 cut(s) 150, 549
BseXI GCAGC 1 cut(s) 153
BseYI CCCAGC 1 cut(s) 427
BshFI GGCC 1 cut(s) 251
BsiHKAI GWGCWC 2 cut(s) 150, 229
BsiSI CCGG 2 cut(s) 299, 390
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 1 cut(s) 251
Bsp1286I GDGCHC 3 cut(s) 150, 229, 549
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 251
BspPI GGATC 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 96, 161
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 394
BstACI GRCGYC 1 cut(s) 394
BstDEI CTNAG 2 cut(s) 6, 536
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 388
BstSLI GKGCMC 2 cut(s) 150, 549
BstV1I GCAGC 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 274
BsuRI GGCC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 476
CviAII CATG 1 cut(s) 493
CviJI RGCY 8 cut(s) 5, 41, 158, 251, 298, 355, 510, 532
CviKI_1 RGCY 8 cut(s) 5, 41, 158, 251, 298, 355, 510, 532
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 2 cut(s) 6, 536
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
FaeI CATG 1 cut(s) 496
FaiI YATR 6 cut(s) 194, 210, 254, 385, 488, 494
FaqI GGGAC 1 cut(s) 372
FatI CATG 1 cut(s) 492
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
GluI GCNGC 1 cut(s) 167
GsaI CCCAGC 1 cut(s) 431
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 251
HapII CCGG 2 cut(s) 299, 390
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 1 cut(s) 496
HinfI GANTC 3 cut(s) 89, 105, 457
HpaII CCGG 2 cut(s) 299, 390
Hpy166II GTNNAC 2 cut(s) 148, 434
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 2 cut(s) 148, 434
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 6, 536
HpySE526I ACGT 1 cut(s) 394
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 1 cut(s) 496
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 68, 188, 312, 403, 413
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 1 cut(s) 414
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 414
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 2 cut(s) 390, 476
MhlI GDGCHC 3 cut(s) 150, 229, 549
MluCI AATT 3 cut(s) 198, 327, 438
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 2 cut(s) 79, 297
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 2 cut(s) 294, 441
MspI CCGG 2 cut(s) 299, 390
MspR9I CCNGG 1 cut(s) 390
NciI CCSGG 1 cut(s) 390
NdeII GATC 1 cut(s) 213
NlaIII CATG 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 89, 457
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 249
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SaqAI TTAA 2 cut(s) 294, 441
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 3 cut(s) 150, 229, 549
SetI ASST 7 cut(s) 43, 160, 259, 308, 357, 397, 518
SfaNI GCATC 1 cut(s) 414
SmlI CTYRAG 2 cut(s) 42, 228
SmoI CTYRAG 2 cut(s) 42, 228
Sse9I AATT 3 cut(s) 198, 327, 438
SsiI CCGC 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 388
TaiI ACGT 1 cut(s) 397
TaqI TCGA 2 cut(s) 103, 351
TasI AATT 3 cut(s) 198, 327, 438
TfiI GAWTC 2 cut(s) 89, 457
Tru1I TTAA 2 cut(s) 294, 441
Tru9I TTAA 2 cut(s) 294, 441
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 351
VneI GTGCAC 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 138
ZraI GACGTC 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.