Rh4AG302000

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000168
Physical Location & Seq
Reverse (-)
61485445 .. 61502862
17418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG302000.1

Sequence Viewer

Length: 603 bp
ATGAGGCGTGTGAAAGTGCAACACCTCATAGATGATGTTGATGAAAGCATGAGGGCGGGTAAGGCAGTGGAGATCGGAAAGGCTGCCTTCGCAACCACTCTGAATCTGCTGTCCCGGACTATCTTCTCGGTCGATTTAGCTGACCCGAGTAGCGAGATGGCTAGGAAGTTCAAGGAGAATGTTCGAGGTACAATGGAAGCTGTAGGGAAACCAAATATGGTGGACTTTTTCCCTTTGCTTAGGAAGCTTGACCCCCAAGGCATAAGGCGACGCGTGACTAAATATTTCCGCGAAACAGTAGTCTACTTCAACGGCATGATCGATGAAAGGTTGGAATCAAGAAAAGGGTACCAGTATGTCACAAGTAATGATATGTTGGATATCCTTATAAACATCAGTAAAGAGAGAAATGAAGATATGGACGAGGCACAAATTGAACATCTCATTCTGGATCTATTTACTGCTGATCCCGCCCTACCTCCTCGCCGCGTCATCACAGCTGATGTACGGACCGCCAAAGCCGTCGCCGGCGTCAACCGGAACAAGTTGAAATGTGTTTCGAGGCAAGAAGCTGTTGAAGCATCTCAGCACTTGGGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

200

Amino Acids

22.75

Weight (kDa)

8.99

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 6 - 155 1.9e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
Acc65I GGTACC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 303
AccII CGCG 3 cut(s) 273, 291, 489
AciI CCGC 5 cut(s) 56, 289, 471, 487, 513
AclWI GGATC 2 cut(s) 459, 461
AcyI GRCGYC 1 cut(s) 531
AfaI GTAC 3 cut(s) 190, 350, 507
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 5 cut(s) 172, 310, 437, 550, 578
AluBI AGCT 5 cut(s) 140, 200, 247, 500, 572
AluI AGCT 5 cut(s) 140, 200, 247, 500, 572
AlwI GGATC 2 cut(s) 459, 461
Ama87I CYCGRG 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 285, 317
Asp718I GGTACC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 510
AsuC2I CCSGG 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 151
BceAI ACGGC 2 cut(s) 328, 506
BcnI CCSGG 1 cut(s) 115
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 2 cut(s) 84, 487
BlsI GCNGC 2 cut(s) 85, 488
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 510
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 510
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 537
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 1 cut(s) 352
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 3 cut(s) 273, 291, 489
Bsh1285I CGRYCG 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 348
BshVI ATCGAT 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 3 cut(s) 115, 528, 538
BslFI GGGAC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 145
Bsp143I GATC 4 cut(s) 72, 318, 451, 466
BspACI CCGC 5 cut(s) 56, 289, 471, 487, 513
BspCNI CTCAG 1 cut(s) 598
BspDI ATCGAT 1 cut(s) 321
BspFNI CGCG 3 cut(s) 273, 291, 489
BspLI GGNNCC 1 cut(s) 350
BspPI GGATC 2 cut(s) 459, 461
BspT107I GGYRCC 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 4 cut(s) 72, 318, 451, 466
BssNI GRCGYC 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 2 cut(s) 239, 585
BstFNI CGCG 3 cut(s) 273, 291, 489
BstKTI GATC 4 cut(s) 75, 321, 454, 469
BstMBI GATC 4 cut(s) 72, 318, 451, 466
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 6 cut(s) 62, 89, 244, 470, 578, 595
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 201
BstUI CGCG 3 cut(s) 273, 291, 489
BstV1I GCAGC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
Bsu15I ATCGAT 1 cut(s) 321
BsuTUI ATCGAT 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 529
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 510
ClaI ATCGAT 1 cut(s) 321
CpoI CGGWCCG 1 cut(s) 510
CseI GACGC 3 cut(s) 279, 478, 520
Csp6I GTAC 3 cut(s) 189, 349, 506
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CspI CGGWCCG 1 cut(s) 510
CviAII CATG 2 cut(s) 49, 316
CviJI RGCY 8 cut(s) 83, 140, 161, 200, 247, 500, 521, 572
CviKI_1 RGCY 8 cut(s) 83, 140, 161, 200, 247, 500, 521, 572
CviQI GTAC 3 cut(s) 189, 349, 506
DdeI CTNAG 2 cut(s) 239, 585
DpnI GATC 4 cut(s) 74, 320, 453, 468
DpnII GATC 4 cut(s) 72, 318, 451, 466
Eco130I CCWWGG 1 cut(s) 256
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 510
Eco88I CYCGRG 1 cut(s) 145
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 2 cut(s) 52, 319
FaiI YATR 9 cut(s) 29, 50, 218, 263, 317, 357, 374, 389, 419
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 1 cut(s) 97
FatI CATG 2 cut(s) 48, 315
FauI CCCGC 2 cut(s) 49, 478
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 84, 487
Fsp4HI GCNGC 2 cut(s) 84, 487
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 84, 487
HapII CCGG 3 cut(s) 115, 528, 538
HgaI GACGC 3 cut(s) 279, 478, 520
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 2 cut(s) 52, 319
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 103, 335
HpaII CCGG 3 cut(s) 115, 528, 538
Hpy166II GTNNAC 3 cut(s) 223, 304, 535
Hpy188I TCNGA 2 cut(s) 77, 102
Hpy188III TCNNGA 2 cut(s) 339, 449
Hpy8I GTNNAC 3 cut(s) 223, 304, 535
Hpy99I CGWCG 2 cut(s) 273, 527
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 89, 244, 470, 578, 595
HpyF3I CTNAG 2 cut(s) 239, 585
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 2 cut(s) 52, 319
KpnI GGTACC 1 cut(s) 352
KroI GCCGGC 1 cut(s) 527
KroNI GCCGGC 1 cut(s) 529
Kzo9I GATC 4 cut(s) 72, 318, 451, 466
LpnPI CCDG 5 cut(s) 128, 365, 434, 541, 551
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 590
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 274, 358
MalI GATC 4 cut(s) 74, 320, 453, 468
MboI GATC 4 cut(s) 72, 318, 451, 466
MboII GAAGA 2 cut(s) 115, 425
MflI RGATCY 1 cut(s) 451
MluCI AATT 1 cut(s) 432
MluI ACGCGT 1 cut(s) 271
MmeI TCCRAC 2 cut(s) 312, 357
MnlI CCTC 7 cut(s) 35, 45, 179, 418, 489, 492, 555
MreI CGCCGGCG 1 cut(s) 527
MroNI GCCGGC 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 3 cut(s) 115, 528, 538
MspR9I CCNGG 1 cut(s) 115
MvnI CGCG 3 cut(s) 273, 291, 489
MwoI GCNNNNNNNGC 6 cut(s) 62, 89, 244, 470, 578, 595
NaeI GCCGGC 1 cut(s) 529
NciI CCSGG 1 cut(s) 115
NdeII GATC 4 cut(s) 72, 318, 451, 466
NgoMIV GCCGGC 1 cut(s) 527
NlaIII CATG 2 cut(s) 52, 319
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 274, 358
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdiI GCCGGC 1 cut(s) 529
PfeI GAWTC 2 cut(s) 103, 335
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 2 cut(s) 85, 488
PsiI TTATAA 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 510
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 3 cut(s) 190, 350, 507
RsaNI GTAC 3 cut(s) 189, 349, 506
Rsr2I CGGWCCG 1 cut(s) 510
RsrII CGGWCCG 1 cut(s) 510
SatI GCNGC 2 cut(s) 84, 487
Sau3AI GATC 4 cut(s) 72, 318, 451, 466
Sau96I GGNCC 1 cut(s) 510
ScrFI CCNGG 1 cut(s) 115
SetI ASST 9 cut(s) 27, 142, 190, 202, 249, 332, 481, 502, 574
SfaNI GCATC 1 cut(s) 590
SfcI CTRYAG 1 cut(s) 201
SgrAI CRCCGGYG 1 cut(s) 527
SinI GGWCC 1 cut(s) 510
Sse9I AATT 1 cut(s) 432
SsiI CCGC 5 cut(s) 56, 289, 471, 487, 513
SspI AATATT 1 cut(s) 284
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 4 cut(s) 132, 184, 321, 560
TaqII GACCGA 1 cut(s) 118
TasI AATT 1 cut(s) 432
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 2 cut(s) 103, 335
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 2 cut(s) 274, 358
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 2 cut(s) 274, 358
TspDTI ATGAA 3 cut(s) 57, 339, 426
TspGWI ACGGA 1 cut(s) 523
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.