Rh4BG310000

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000168
Physical Location & Seq
Forward (+)
47836413 .. 47853451
17039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG310000.1

Sequence Viewer

Length: 900 bp
ATGGATTTTTTCTTGAGTTGCATACTCTTGTCTTTTTGCTTTGCTGCCTCCTGGTTCTTAATCCAAGCCCTCCATGGAAGAACCAGAGTTAGGCTTCCACCAGGGCCAAAGCCATTTCCATTGGTTGGGAATCTGTTTGAGCTTGGAGACAAACCTCATCTCTCTTTGACCAAGCTCTCACAACGCTATGGCCCCATAATCAGTTTGCAACTCGGGCAAGTAACGACTGTTGTAGCTTCTTCATCAGCCATGGCCAAAGAAATCCTCCGAAACCATGACCAATTCCTTTGCAACCGAACAGTCCCGGATGCACTACGAGCCTTTAAAGACTACAGCTTGCCTTGGCTTCCAGTATCACCGAGGTGGAGAAACATTCGCAAAATATGCAACTCCCAATTGTTTGCCACTAAAGTTCTTGATGCCAACCGAGCAGGTCGGCGAGTCAAAGTGCAAGAGCTCATAGCTAGTGTCAAGGACAGTATGGTAAAGGGTGCGGCAGTAGATATTGGAGAGGCTGCTTTCAAAAGCACTCTCAATTTGCTATCGAGGACTTGTTTCTCTATGGATCTAGCTGAAACTGGCTCGGGCAGTAGTGATACGGCTAGAGAGTTCAAGGAGATTGTTTGGGGTATAATGGAAGAGGCTGGAAAGCCGAATTTGGGGGACTACTTTCCTGTGCTTAGGAAGCTTGACCCCCAAGGCATAAGGCGACGCTTCGCCAATTACTTCCTGAGGATGTTAGGCTTCATTGGATCTATTGTCAATAAAAGGTTGGAATCCAGAAAAGTGCATGATTATGTCACAAGTAATGATATGCTGGATACCCTTATAAACATCAGTCAAGAGAAAAATGAGGAGGATATGAACAACTCCCAAGTTGTTGACCATTTGTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

299

Amino Acids

33.73

Weight (kDa)

9.4

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 293 2.6e-29 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
Acc36I ACCTGC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 1 cut(s) 494
AclWI GGATC 2 cut(s) 573, 760
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 655
AfiI CCNNNNNNNGG 3 cut(s) 90, 125, 659
AgsI TTSAA 2 cut(s) 523, 613
AjnI CCWGG 2 cut(s) 50, 100
AleI CACNNNNGTG 1 cut(s) 361
AluBI AGCT 8 cut(s) 142, 175, 236, 336, 457, 464, 572, 688
AluI AGCT 8 cut(s) 142, 175, 236, 336, 457, 464, 572, 688
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 573, 760
Ama87I CYCGRG 2 cut(s) 212, 583
AoxI GGCC 3 cut(s) 104, 190, 252
ApeKI GCWGC 2 cut(s) 44, 515
ApoI RAATTY 1 cut(s) 655
AspS9I GGNCC 2 cut(s) 104, 191
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 348
AvaI CYCGRG 2 cut(s) 212, 583
AxyI CCTNAGG 1 cut(s) 731
BalI TGGCCA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 2 cut(s) 31, 502
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 2 cut(s) 52, 102
BciVI GTATCC 1 cut(s) 814
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 3 cut(s) 465, 569, 603
BfmI CTRYAG 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 422
BfuI GTATCC 1 cut(s) 814
BisI GCNGC 3 cut(s) 45, 495, 516
BlsI GCNGC 3 cut(s) 46, 496, 517
Bme1390I CCNGG 3 cut(s) 52, 102, 305
BmeT110I CYCGRG 2 cut(s) 212, 583
BmgT120I GGNCC 2 cut(s) 104, 191
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 3 cut(s) 52, 102, 305
BmsI GCATC 2 cut(s) 298, 409
Bpu10I CCTNAGC 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 305
BsaJI CCNNGG 6 cut(s) 73, 101, 249, 341, 359, 697
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 125, 659
Bse1I ACTGG 2 cut(s) 350, 583
Bse21I CCTNAGG 1 cut(s) 731
BseBI CCWGG 2 cut(s) 52, 102
BseDI CCNNGG 6 cut(s) 73, 101, 249, 341, 359, 697
BseGI GGATG 2 cut(s) 313, 741
BseLI CCNNNNNNNGG 3 cut(s) 90, 125, 659
BseMII CTCAG 1 cut(s) 722
BseNI ACTGG 2 cut(s) 350, 583
BseRI GAGGAG 1 cut(s) 869
BseXI GCAGC 2 cut(s) 31, 502
BshFI GGCC 3 cut(s) 106, 192, 254
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 2 cut(s) 212, 583
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 2 cut(s) 287, 677
BslI CCNNNNNNNGG 3 cut(s) 90, 125, 659
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 287, 677
BsnI GGCC 3 cut(s) 106, 192, 254
BsoBI CYCGRG 2 cut(s) 212, 583
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 2 cut(s) 565, 752
Bsp19I CCATGG 2 cut(s) 73, 249
BspACI CCGC 1 cut(s) 494
BspANI GGCC 3 cut(s) 106, 192, 254
BspCNI CTCAG 1 cut(s) 723
BspLI GGNNCC 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 422
BspPI GGATC 2 cut(s) 573, 760
BsrI ACTGG 2 cut(s) 350, 583
BssECI CCNNGG 6 cut(s) 73, 101, 249, 341, 359, 697
BssMI GATC 2 cut(s) 565, 752
BssT1I CCWWGG 4 cut(s) 73, 249, 341, 697
Bst2UI CCWGG 2 cut(s) 52, 102
Bst4CI ACNGT 3 cut(s) 229, 301, 479
Bst6I CTCTTC 1 cut(s) 633
BstAPI GCANNNNNTGC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 680, 731
BstDSI CCRYGG 2 cut(s) 73, 249
BstF5I GGATG 2 cut(s) 313, 741
BstKTI GATC 2 cut(s) 568, 755
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 565, 752
BstMWI GCNNNNNNNGC 5 cut(s) 214, 317, 384, 428, 685
BstNI CCWGG 2 cut(s) 52, 102
BstSCI CCNGG 3 cut(s) 50, 100, 303
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 31, 502
BstX2I RGATCY 2 cut(s) 565, 752
BstYI RGATCY 2 cut(s) 565, 752
Bsu36I CCTNAGG 1 cut(s) 731
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 3 cut(s) 106, 192, 254
BtgI CCRYGG 2 cut(s) 73, 249
BtsCI GGATG 2 cut(s) 313, 741
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 104, 191
CseI GACGC 1 cut(s) 720
CviAII CATG 4 cut(s) 74, 250, 275, 791
DdeI CTNAG 2 cut(s) 680, 731
DpnI GATC 2 cut(s) 567, 754
DpnII GATC 2 cut(s) 565, 752
DraI TTTAAA 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 633
EarI CTCTTC 1 cut(s) 633
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 4 cut(s) 73, 249, 341, 697
Eco24I GRGCYC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 457
Eco81I CCTNAGG 1 cut(s) 731
Eco88I CYCGRG 2 cut(s) 212, 583
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 50, 100
EcoT14I CCWWGG 4 cut(s) 73, 249, 341, 697
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 4 cut(s) 73, 249, 341, 697
FaeI CATG 4 cut(s) 77, 253, 278, 794
FaqI GGGAC 2 cut(s) 287, 677
FatI CATG 4 cut(s) 73, 249, 274, 790
Fnu4HI GCNGC 3 cut(s) 45, 495, 516
FokI GGATG 2 cut(s) 320, 748
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 3 cut(s) 45, 495, 516
FspBI CTAG 3 cut(s) 465, 569, 603
GluI GCNGC 3 cut(s) 45, 495, 516
HaeIII GGCC 3 cut(s) 106, 192, 254
HapII CCGG 1 cut(s) 305
HgaI GACGC 1 cut(s) 720
Hin1II CATG 4 cut(s) 77, 253, 278, 794
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 3 cut(s) 130, 441, 776
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 348
Hpy166II GTNNAC 1 cut(s) 883
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 5 cut(s) 13, 416, 730, 780, 842
Hpy8I GTNNAC 1 cut(s) 883
Hpy99I CGWCG 1 cut(s) 714
HpyCH4III ACNGT 3 cut(s) 229, 301, 479
HpyCH4V TGCA 7 cut(s) 21, 208, 291, 311, 387, 451, 790
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 317, 384, 428, 685
HpyF3I CTNAG 2 cut(s) 680, 731
Hsp92II CATG 4 cut(s) 77, 253, 278, 794
Kzo9I GATC 2 cut(s) 565, 752
Lsp1109I GCAGC 2 cut(s) 31, 502
LweI GCATC 2 cut(s) 298, 409
MaeI CTAG 3 cut(s) 465, 569, 603
MaeIII GTNAC 2 cut(s) 220, 799
MalI GATC 2 cut(s) 567, 754
MboI GATC 2 cut(s) 565, 752
MboII GAAGA 3 cut(s) 90, 231, 650
MfeI CAATTG 1 cut(s) 395
MflI RGATCY 2 cut(s) 565, 752
MhlI GDGCHC 1 cut(s) 459
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 5 cut(s) 281, 395, 535, 655, 721
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 450
MmeI TCCRAC 1 cut(s) 753
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 2 cut(s) 59, 324
MslI CAYNNNNRTG 2 cut(s) 361, 795
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 3 cut(s) 52, 102, 305
MunI CAATTG 1 cut(s) 395
MvaI CCWGG 2 cut(s) 52, 102
MwoI GCNNNNNNNGC 5 cut(s) 214, 317, 384, 428, 685
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 2 cut(s) 73, 249
NdeII GATC 2 cut(s) 565, 752
NlaIII CATG 4 cut(s) 77, 253, 278, 794
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 799
OliI CACNNNNGTG 1 cut(s) 361
PfeI GAWTC 2 cut(s) 130, 776
PflMI CCANNNNNTGG 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 3 cut(s) 46, 496, 517
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PsiI TTATAA 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 50, 100
PspGI CCWGG 2 cut(s) 50, 100
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 104, 191
PsuI RGATCY 2 cut(s) 565, 752
RseI CAYNNNNRTG 2 cut(s) 361, 795
SacI GAGCTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 59, 324
SatI GCNGC 3 cut(s) 45, 495, 516
Sau3AI GATC 2 cut(s) 565, 752
Sau96I GGNCC 2 cut(s) 104, 191
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 3 cut(s) 52, 102, 305
SduI GDGCHC 1 cut(s) 459
SfaNI GCATC 2 cut(s) 298, 409
SfcI CTRYAG 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 361, 795
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 5 cut(s) 281, 395, 535, 655, 721
SsiI CCGC 1 cut(s) 494
SspMI CTAG 3 cut(s) 465, 569, 603
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 3 cut(s) 50, 100, 303
StyI CCWWGG 4 cut(s) 73, 249, 341, 697
TaaI ACNGT 3 cut(s) 229, 301, 479
TaqI TCGA 1 cut(s) 545
TasI AATT 5 cut(s) 281, 395, 535, 655, 721
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 2 cut(s) 130, 776
Tru1I TTAA 2 cut(s) 59, 324
Tru9I TTAA 2 cut(s) 59, 324
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 2 cut(s) 44, 515
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 3 cut(s) 231, 736, 878
Van91I CCANNNNNTGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XspI CTAG 3 cut(s) 465, 569, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.