Rmu_sc0002620.1_g000010

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002620.1
OG0000168
Physical Location & Seq
Reverse (-)
44421 .. 45214
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002620.1_g000010.1.cds

Sequence Viewer

Length: 591 bp
atggatctagctgaaactggctcgggcagtagtgatacggctagagagttcaaggagattgtttggggtataatggaagaggctggaaagccgaatttgggggactactttcctgtgcttaggaagcttgacccccaaggcataaggcggcgcttcgccaattacttcatgaggatgttaggcttcattggatctattgtcaatgaaaggttggaatccagaaaagcgcatgattatgtcacaagtaatgatatgctggatacccttataaacatcagtcaagagaaaaatgaggaggatatgaacaactcccaagttgttgaccatttatacaacttcggccacattggaatgggcaatatggctgagctactacacaacccaaatagcctttctaaagctcaagaagagctggatcaaatgattggaaaaggaaaaccaatagaggaatccgacattgctagactcccttacttacaagcaataatcaaggaaaccttccggttgcacccagcggttccattgctactgccacggaaagctgaaatagatgtagaaattgggggttatattgtccctaaaggtgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

196

Amino Acids

22.1

Weight (kDa)

5.18

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 584
AciI CCGC 2 cut(s) 148, 515
AclWI GGATC 3 cut(s) 12, 199, 423
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 52
AjuI GAANNNNNNNTTGG 2 cut(s) 376, 408
AluBI AGCT 6 cut(s) 11, 127, 370, 401, 412, 542
AluI AGCT 6 cut(s) 11, 127, 370, 401, 412, 542
AlwI GGATC 3 cut(s) 12, 199, 423
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 1 cut(s) 340
ApoI RAATTY 1 cut(s) 94
AspLEI GCGC 2 cut(s) 153, 229
AvaI CYCGRG 1 cut(s) 22
BanI GGYRCC 1 cut(s) 584
BceAI ACGGC 1 cut(s) 54
BciVI GTATCC 1 cut(s) 253
BfaI CTAG 3 cut(s) 8, 42, 462
BfoI RGCGCY 1 cut(s) 154
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 1 cut(s) 149
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 519, 586
Bpu10I CCTNAGC 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 136, 533
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 2 cut(s) 456, 521
BseDI CCNNGG 2 cut(s) 136, 533
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 2 cut(s) 456, 521
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 308
BseYI CCCAGC 1 cut(s) 511
BshFI GGCC 1 cut(s) 342
BshNI GGYRCC 1 cut(s) 584
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 502
BslFI GGGAC 2 cut(s) 116, 560
BslI CCNNNNNNNGG 1 cut(s) 98
BsmFI GGGAC 2 cut(s) 116, 560
BsnI GGCC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 22
Bsp143I GATC 3 cut(s) 4, 191, 415
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 2 cut(s) 148, 515
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 519, 586
BspPI GGATC 3 cut(s) 12, 199, 423
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 456, 521
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 136, 533
BssMI GATC 3 cut(s) 4, 191, 415
BssT1I CCWWGG 1 cut(s) 136
Bst6I CTCTTC 2 cut(s) 72, 402
BstDEI CTNAG 2 cut(s) 119, 366
BstDSI CCRYGG 1 cut(s) 533
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 2 cut(s) 153, 229
BstKTI GATC 3 cut(s) 7, 194, 418
BstMBI GATC 3 cut(s) 4, 191, 415
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstX2I RGATCY 2 cut(s) 4, 191
BstYI RGATCY 2 cut(s) 4, 191
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 533
BtsCI GGATG 1 cut(s) 180
CciI TCATGA 1 cut(s) 168
CfoI GCGC 2 cut(s) 153, 229
CviAII CATG 2 cut(s) 169, 230
DdeI CTNAG 2 cut(s) 119, 366
DpnI GATC 3 cut(s) 6, 193, 417
DpnII GATC 3 cut(s) 4, 191, 415
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 72, 402
EarI CTCTTC 2 cut(s) 72, 402
Eco130I CCWWGG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 172, 233
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FaqI GGGAC 2 cut(s) 116, 560
FatI CATG 2 cut(s) 168, 229
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 3 cut(s) 8, 42, 462
GlaI GCGC 2 cut(s) 152, 228
GluI GCNGC 1 cut(s) 149
GsaI CCCAGC 1 cut(s) 515
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 502
HhaI GCGC 2 cut(s) 153, 229
Hin1II CATG 2 cut(s) 172, 233
Hin6I GCGC 2 cut(s) 151, 227
HinP1I GCGC 2 cut(s) 151, 227
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 3 cut(s) 215, 449, 465
HpaII CCGG 1 cut(s) 502
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 454
Hpy188III TCNNGA 4 cut(s) 169, 219, 281, 404
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 508
HpyCH4V TGCA 1 cut(s) 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 2 cut(s) 119, 366
Hsp92II CATG 2 cut(s) 172, 233
HspAI GCGC 2 cut(s) 151, 227
Kzo9I GATC 3 cut(s) 4, 191, 415
LguI GCTCTTC 1 cut(s) 402
LpnPI CCDG 8 cut(s) 3, 69, 126, 232, 242, 398, 515, 525
MaeI CTAG 3 cut(s) 8, 42, 462
MaeIII GTNAC 1 cut(s) 238
MalI GATC 3 cut(s) 6, 193, 417
MboI GATC 3 cut(s) 4, 191, 415
MboII GAAGA 2 cut(s) 89, 419
MflI RGATCY 2 cut(s) 4, 191
MluCI AATT 3 cut(s) 94, 160, 558
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 2 cut(s) 192, 477
MnlI CCTC 5 cut(s) 73, 165, 286, 289, 439
MslI CAYNNNNRTG 3 cut(s) 173, 234, 350
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 1 cut(s) 502
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeII GATC 3 cut(s) 4, 191, 415
NlaIII CATG 2 cut(s) 172, 233
NlaIV GGNNCC 2 cut(s) 519, 586
NmuCI GTSAC 1 cut(s) 238
PagI TCATGA 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 215, 449
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
PsiI TTATAA 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 519, 586
PsuI RGATCY 2 cut(s) 4, 191
RseI CAYNNNNRTG 3 cut(s) 173, 234, 350
SapI GCTCTTC 1 cut(s) 402
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 3 cut(s) 4, 191, 415
SchI GAGTC 1 cut(s) 459
SetI ASST 9 cut(s) 13, 129, 212, 372, 403, 414, 500, 544, 586
SmiMI CAYNNNNRTG 3 cut(s) 173, 234, 350
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 3 cut(s) 94, 160, 558
SsiI CCGC 2 cut(s) 148, 515
SspMI CTAG 3 cut(s) 8, 42, 462
StyI CCWWGG 1 cut(s) 136
TasI AATT 3 cut(s) 94, 160, 558
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 2 cut(s) 215, 449
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 4 cut(s) 157, 175, 219, 317
TspGWI ACGGA 1 cut(s) 550
XapI RAATTY 1 cut(s) 94
XspI CTAG 3 cut(s) 8, 42, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.