RchiOBHm_Chr7g0218001

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000168
Physical Location & Seq
Forward (+)
35929891 .. 35931799
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19513

Sequence Viewer

Length: 1047 bp
ATGGGTCAGTCCCTCCTTCAATATATATATATATATATAAATATATATTATGATGGGTATCTGTTTGAGATCGGTGACAAACCCCATCTCTCCCTCACTAAGCTTTCCCAGCGCCATGGCCCCATAATGAGTTTGCAGCTAGGCCAATTAACCACAATCGTAGTTTCTTCAACAACTTTGGCCAAAGAAATCCTCCGAACTCATGACCAAGTGTTCTGCAACTTAACCCTCCCAGAGGCAATCCACGCCTGCAAACATAGCGATTACAGCATGGCTTGGCTTCCCGTATCAGCAAGATGGAGAAATCTTCGTACAATATGCAACTTGCAATTGTTTGCCCCCAAAGTTCTTGATGCTAACCAAGCCAAACGGAGGGTTAAGGTGCAAAAGCTCATAGATGATGTCAATGGAAGCATGAGGGCCGGTGAGGCAGTGAATATCAGAAGGGCTGCTTTCTCAACCACACTCAATCTGTTGTCACAGACTATCTTCTCTGTGGATTTAGCTGACCCGAGTAGTGAGACAACTAGGGAGTTCAAGGAGACTGTCTGGGGTATGATGGAAGAGATAGGAAAACCAAACTTGGCGGATTATTTTCTTTTTCTTAGGAAGCTTGATCCGCAAGGCATAAGGCCGCGCTTGACCCATTACTTCCAAATTACAGTAGACATGTTTGATCGAATGATCCATCAAAGGTTGGAATCAAGAAAACGGGATGGTTATATCTCAACCAATGATATGTTGGATACACTTATGAATATCAATGAAGAGAAAATGGAGGATATGGACGTGCTTGAAACTCAACATTTATTTCTGGATCTATTTGCTGCTGGTACGGACACAAGTTCAGCCACAATGGAATGGGCAATGGCTGAGCTACTACGCAACCCAAAAATCCTTTCGAAAGCTCAAGCAGAACTTGAGCAAGTGATTGGAAAAGGGAAACTAGTTGAGGAATCAGACATTGCACGACTCCCTTACTTACAAGCAATAATCAAAGAAACATTTCGGGTTCATCCAACAGTTCCTTTTCTACTCCCCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

348

Amino Acids

39.96

Weight (kDa)

6.52

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 17 - 348 1.3e-55 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 666
AccII CGCG 1 cut(s) 637
AciI CCGC 3 cut(s) 587, 620, 635
AclWI GGATC 3 cut(s) 611, 679, 825
AcoI YGGCCR 1 cut(s) 180
AfaI GTAC 2 cut(s) 313, 835
AfiI CCNNNNNNNGG 2 cut(s) 235, 372
AflIII ACRYGT 1 cut(s) 669
AgsI TTSAA 4 cut(s) 20, 171, 538, 797
AhlI ACTAGT 1 cut(s) 946
AjiI CACGTC 1 cut(s) 790
AjuI GAANNNNNNNTTGG 2 cut(s) 883, 915
AluBI AGCT 7 cut(s) 103, 139, 391, 506, 613, 877, 908
AluI AGCT 7 cut(s) 103, 139, 391, 506, 613, 877, 908
Alw26I GTCTC 2 cut(s) 515, 536
AlwI GGATC 3 cut(s) 611, 679, 825
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 5 cut(s) 118, 142, 180, 420, 632
ApeKI GCWGC 3 cut(s) 136, 449, 827
Asp700I GAANNNNTTC 1 cut(s) 1005
AspLEI GCGC 2 cut(s) 114, 639
AspS9I GGNCC 2 cut(s) 119, 420
AsuC2I CCSGG 1 cut(s) 1042
AsuHPI GGTGA 2 cut(s) 86, 437
AsuII TTCGAA 1 cut(s) 902
AvaI CYCGRG 1 cut(s) 511
BalI TGGCCA 1 cut(s) 182
BbvI GCAGC 3 cut(s) 148, 436, 814
BccI CCATC 6 cut(s) 47, 93, 291, 553, 696, 710
BciVI GTATCC 1 cut(s) 739
BcnI CCSGG 1 cut(s) 1042
BcoDI GTCTC 2 cut(s) 515, 536
BcuI ACTAGT 1 cut(s) 946
BfaI CTAG 3 cut(s) 140, 528, 947
BfoI RGCGCY 1 cut(s) 115
BfuI GTATCC 1 cut(s) 739
BglI GCCNNNNNGGC 1 cut(s) 428
BisI GCNGC 4 cut(s) 137, 450, 635, 828
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 4 cut(s) 138, 451, 636, 829
Bme1390I CCNGG 1 cut(s) 1042
BmeT110I CYCGRG 1 cut(s) 511
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 119, 420
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 1042
BmsI GCATC 1 cut(s) 343
Bpu1102I GCTNAGC 1 cut(s) 873
Bpu14I TTCGAA 1 cut(s) 902
BpuEI CTTGAG 2 cut(s) 894, 941
BpuMI CCSGG 1 cut(s) 1042
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 115, 1040
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 372
Bse118I RCCGGY 1 cut(s) 422
Bse3DI GCAATG 2 cut(s) 873, 963
Bse8I GATNNNNATC 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 115, 1040
BseGI GGATG 2 cut(s) 721, 1015
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 235, 372
BseMI GCAATG 2 cut(s) 873, 963
BseMII CTCAG 1 cut(s) 864
BseXI GCAGC 3 cut(s) 148, 436, 814
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 637
BshFI GGCC 5 cut(s) 120, 144, 182, 422, 634
BsiHKCI CYCGRG 1 cut(s) 511
BsiSI CCGG 2 cut(s) 423, 1042
BslI CCNNNNNNNGG 2 cut(s) 235, 372
BsmAI GTCTC 2 cut(s) 515, 536
BsnI GGCC 5 cut(s) 120, 144, 182, 422, 634
BsoBI CYCGRG 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 902
Bsp143I GATC 5 cut(s) 69, 616, 676, 684, 817
Bsp1720I GCTNAGC 1 cut(s) 873
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 3 cut(s) 587, 620, 635
BspANI GGCC 5 cut(s) 120, 144, 182, 422, 634
BspCNI CTCAG 1 cut(s) 865
BspFNI CGCG 1 cut(s) 637
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 3 cut(s) 611, 679, 825
BspT104I TTCGAA 1 cut(s) 902
BsrDI GCAATG 2 cut(s) 873, 963
BsrFI RCCGGY 1 cut(s) 422
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 115, 1040
BssMI GATC 5 cut(s) 69, 616, 676, 684, 817
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 3 cut(s) 547, 664, 1024
Bst6I CTCTTC 2 cut(s) 558, 762
BstBI TTCGAA 1 cut(s) 902
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 3 cut(s) 99, 605, 873
BstDSI CCRYGG 1 cut(s) 115
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 721, 1015
BstFNI CGCG 1 cut(s) 637
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 2 cut(s) 114, 639
BstKTI GATC 5 cut(s) 72, 619, 679, 687, 820
BstMAI GTCTC 2 cut(s) 515, 536
BstMBI GATC 5 cut(s) 69, 616, 676, 684, 817
BstMWI GCNNNNNNNGC 7 cut(s) 109, 245, 258, 267, 362, 428, 619
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 1 cut(s) 1040
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 3 cut(s) 148, 436, 814
BstX2I RGATCY 1 cut(s) 817
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 817
BsuI GTATCC 1 cut(s) 739
BsuRI GGCC 5 cut(s) 120, 144, 182, 422, 634
BtgI CCRYGG 1 cut(s) 115
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 2 cut(s) 721, 1015
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 1 cut(s) 438
Cac8I GCNNGC 1 cut(s) 250
CciI TCATGA 1 cut(s) 202
CfoI GCGC 2 cut(s) 114, 639
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 2 cut(s) 119, 420
Csp6I GTAC 2 cut(s) 312, 834
CviAII CATG 5 cut(s) 116, 203, 271, 415, 670
CviQI GTAC 2 cut(s) 312, 834
DdeI CTNAG 3 cut(s) 99, 605, 873
DpnI GATC 5 cut(s) 71, 618, 678, 686, 819
DpnII GATC 5 cut(s) 69, 616, 676, 684, 817
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 558, 762
EarI CTCTTC 2 cut(s) 558, 762
EciI GGCGGA 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 511
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 5 cut(s) 119, 206, 274, 418, 673
FalI AAGNNNNNCTT 4 cut(s) 436, 468, 903, 935
FatI CATG 5 cut(s) 115, 202, 270, 414, 669
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 4 cut(s) 137, 450, 635, 828
FokI GGATG 2 cut(s) 728, 1002
Fsp4HI GCNGC 4 cut(s) 137, 450, 635, 828
FspBI CTAG 3 cut(s) 140, 528, 947
GlaI GCGC 2 cut(s) 113, 638
GluI GCNGC 4 cut(s) 137, 450, 635, 828
GsaI CCCAGC 1 cut(s) 112
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 5 cut(s) 120, 144, 182, 422, 634
HapII CCGG 2 cut(s) 423, 1042
HhaI GCGC 2 cut(s) 114, 639
Hin1II CATG 5 cut(s) 119, 206, 274, 418, 673
Hin6I GCGC 2 cut(s) 112, 637
HinP1I GCGC 2 cut(s) 112, 637
HindIII AAGCTT 2 cut(s) 101, 611
HinfI GANTC 3 cut(s) 701, 956, 972
HpaII CCGG 2 cut(s) 423, 1042
HphI GGTGA 2 cut(s) 86, 437
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 3 cut(s) 197, 443, 961
Hpy188III TCNNGA 4 cut(s) 203, 350, 705, 815
Hpy8I GTNNAC 1 cut(s) 667
HpyAV CCTTC 2 cut(s) 26, 438
HpyCH4III ACNGT 3 cut(s) 547, 664, 1024
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 7 cut(s) 136, 219, 252, 321, 328, 385, 968
HpyF10VI GCNNNNNNNGC 7 cut(s) 109, 245, 258, 267, 362, 428, 619
HpyF3I CTNAG 3 cut(s) 99, 605, 873
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 5 cut(s) 119, 206, 274, 418, 673
HspAI GCGC 2 cut(s) 112, 637
Kzo9I GATC 5 cut(s) 69, 616, 676, 684, 817
LpnPI CCDG 7 cut(s) 122, 246, 262, 436, 535, 800, 816
Lsp1109I GCAGC 3 cut(s) 148, 436, 814
LweI GCATC 1 cut(s) 343
MaeI CTAG 3 cut(s) 140, 528, 947
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 2 cut(s) 74, 477
MalI GATC 5 cut(s) 71, 618, 678, 686, 819
MboI GATC 5 cut(s) 69, 616, 676, 684, 817
MboII GAAGA 5 cut(s) 159, 299, 481, 575, 779
MfeI CAATTG 1 cut(s) 329
MflI RGATCY 1 cut(s) 817
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 3 cut(s) 146, 329, 657
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 1 cut(s) 966
MmeI TCCRAC 3 cut(s) 678, 723, 1043
Mox20I TGGCCA 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 1005
MscI TGGCCA 1 cut(s) 182
MseI TTAA 3 cut(s) 149, 224, 378
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 2 cut(s) 423, 1042
MspR9I CCNGG 1 cut(s) 1042
MunI CAATTG 1 cut(s) 329
MvnI CGCG 1 cut(s) 637
MwoI GCNNNNNNNGC 7 cut(s) 109, 245, 258, 267, 362, 428, 619
NciI CCSGG 1 cut(s) 1042
NcoI CCATGG 1 cut(s) 115
NdeII GATC 5 cut(s) 69, 616, 676, 684, 817
NlaIII CATG 5 cut(s) 119, 206, 274, 418, 673
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 74, 477
NspI RCATGY 1 cut(s) 673
NspV TTCGAA 1 cut(s) 902
PagI TCATGA 1 cut(s) 202
PciI ACATGT 1 cut(s) 669
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 2 cut(s) 701, 956
PkrI GCNGC 4 cut(s) 138, 451, 636, 829
PleI GAGTC 1 cut(s) 966
PpsI GAGTC 1 cut(s) 966
PscI ACATGT 1 cut(s) 669
PspFI CCCAGC 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 119, 420
PsuI RGATCY 1 cut(s) 817
RsaI GTAC 2 cut(s) 313, 835
RsaNI GTAC 2 cut(s) 312, 834
SaqAI TTAA 3 cut(s) 149, 224, 378
SatI GCNGC 4 cut(s) 137, 450, 635, 828
Sau3AI GATC 5 cut(s) 69, 616, 676, 684, 817
Sau96I GGNCC 2 cut(s) 119, 420
SchI GAGTC 1 cut(s) 966
ScrFI CCNGG 1 cut(s) 1042
SfaNI GCATC 1 cut(s) 343
SfuI TTCGAA 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 909, 920
SmoI CTYRAG 2 cut(s) 909, 920
SpeI ACTAGT 1 cut(s) 946
Sse9I AATT 3 cut(s) 146, 329, 657
SsiI CCGC 3 cut(s) 587, 620, 635
SspMI CTAG 3 cut(s) 140, 528, 947
StyD4I CCNGG 1 cut(s) 1040
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 3 cut(s) 547, 664, 1024
TaiI ACGT 1 cut(s) 792
TaqI TCGA 2 cut(s) 679, 902
TasI AATT 3 cut(s) 146, 329, 657
TauI GCSGC 1 cut(s) 637
TfiI GAWTC 2 cut(s) 701, 956
Tru1I TTAA 3 cut(s) 149, 224, 378
Tru9I TTAA 3 cut(s) 149, 224, 378
TscAI CASTG 1 cut(s) 438
TseFI GTSAC 2 cut(s) 74, 477
TseI GCWGC 3 cut(s) 136, 449, 827
Tsp45I GTSAC 2 cut(s) 74, 477
TspDTI ATGAA 3 cut(s) 770, 780, 1004
TspGWI ACGGA 2 cut(s) 385, 851
TspRI CASTG 1 cut(s) 438
XagI CCTNNNNNAGG 1 cut(s) 233
XceI RCATGY 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 739
XmiI GTMKAC 1 cut(s) 666
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 3 cut(s) 140, 528, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.