MD12G1099200.v1.1

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000168
Physical Location & Seq
Forward (+)
15461019 .. 15461566
548 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1099200.v1.1.491

Sequence Viewer

Length: 501 bp
ATGAGGCGGTTAGTGACAGTGGAGATGGTGGCAAACAAGCGCATCAACGAGACTGCTTTCATACGAAGAAAGTGCATAGACAACATGCAGTTGTGCGTTGAAGAGGAAGCCTCCAAAGTCGAAGAAGGGCGTGGCGTTCACGTGGCGCGTTTCGGACTTGGTGGATACGAATTCGGAAGAAGGGTTGGAGTTTTTAAGGAAATGAAAGGACTGATGGAATGGAACGGGAATGCCAACGTGGTAGATTTCTTTCCATGGCTGAGGTGGCTTGATCCGCAAGGCTTGAAGAGGAAGATGAAAAGGGAGCTTGGAAAAGCTATACAAATTGCCTCTAAGTTTTTCAAGGAACGCATCCAAGAGAGGGACGTAGGTGGAGAGAAAACTATGGACTTCTTGGATGTGTTGCTTGAATTTGAAGGAGACGGAATTGACAAACTGGCTAAAATTTCTGATCATGATCTCATTATTTTCATACTGGTAAGTTCTCTTTTTAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

167

Amino Acids

19.17

Weight (kDa)

8.55

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 68 - 156 7.4e-07 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 148
AciI CCGC 2 cut(s) 7, 275
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 3 cut(s) 170, 410, 444
AcvI CACGTG 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 5 cut(s) 101, 286, 343, 410, 416
AluBI AGCT 2 cut(s) 307, 317
AluI AGCT 2 cut(s) 307, 317
Alw26I GTCTC 2 cut(s) 44, 414
AlwI GGATC 1 cut(s) 266
ApoI RAATTY 3 cut(s) 170, 410, 444
AspLEI GCGC 2 cut(s) 42, 148
BbrPI CACGTG 1 cut(s) 142
BbvCI CCTCAGC 1 cut(s) 260
BccI CCATC 2 cut(s) 19, 208
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BciVI GTATCC 1 cut(s) 158
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 44, 414
BfuI GTATCC 1 cut(s) 158
BmsI GCATC 2 cut(s) 51, 360
BplI GAGNNNNNCTC 2 cut(s) 95, 127
Bpu10I CCTNAGC 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 441, 480
Bse8I GATNNNNATC 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 2 cut(s) 351, 403
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 2 cut(s) 441, 480
Bsh1236I CGCG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 44, 414
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 235
Bsp143I GATC 3 cut(s) 271, 451, 457
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 2 cut(s) 7, 275
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 148
BspHI TCATGA 1 cut(s) 454
BspPI GGATC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 441, 480
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 3 cut(s) 271, 451, 457
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 96, 281
BstBAI YACGTR 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 260, 333
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 351, 403
BstFNI CGCG 1 cut(s) 148
BstHHI GCGC 2 cut(s) 42, 148
BstKTI GATC 3 cut(s) 274, 454, 460
BstMAI GTCTC 2 cut(s) 44, 414
BstMBI GATC 3 cut(s) 271, 451, 457
BstMWI GCNNNNNNNGC 2 cut(s) 265, 274
BstNSI RCATGY 1 cut(s) 88
BstUI CGCG 1 cut(s) 148
BsuI GTATCC 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 2 cut(s) 351, 403
BtsIMutI CAGTG 1 cut(s) 24
CciI TCATGA 1 cut(s) 454
CfoI GCGC 2 cut(s) 42, 148
CviAII CATG 3 cut(s) 85, 255, 455
CviJI RGCY 8 cut(s) 110, 259, 268, 282, 307, 317, 440, 495
CviKI_1 RGCY 8 cut(s) 110, 259, 268, 282, 307, 317, 440, 495
DdeI CTNAG 2 cut(s) 260, 333
DpnI GATC 3 cut(s) 273, 453, 459
DpnII GATC 3 cut(s) 271, 451, 457
Eam1104I CTCTTC 2 cut(s) 96, 281
EarI CTCTTC 2 cut(s) 96, 281
Eco130I CCWWGG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 3 cut(s) 88, 258, 458
FaiI YATR 8 cut(s) 62, 77, 86, 256, 320, 386, 456, 473
FaqI GGGAC 1 cut(s) 377
FatI CATG 3 cut(s) 84, 254, 454
FbaI TGATCA 1 cut(s) 451
FokI GGATG 2 cut(s) 338, 410
GlaI GCGC 2 cut(s) 41, 147
HhaI GCGC 2 cut(s) 42, 148
Hin1II CATG 3 cut(s) 88, 258, 458
Hin6I GCGC 2 cut(s) 40, 146
HinP1I GCGC 2 cut(s) 40, 146
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 155, 176, 451
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 119, 174, 410
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 3 cut(s) 141, 237, 366
HpyCH4V TGCA 2 cut(s) 75, 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 274
HpyF3I CTNAG 2 cut(s) 260, 333
HpySE526I ACGT 3 cut(s) 141, 237, 366
Hsp92II CATG 3 cut(s) 88, 258, 458
HspAI GCGC 2 cut(s) 40, 146
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 3 cut(s) 271, 451, 457
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 2 cut(s) 422, 461
LweI GCATC 2 cut(s) 51, 360
MaeII ACGT 3 cut(s) 141, 237, 366
MaeIII GTNAC 1 cut(s) 13
MalI GATC 3 cut(s) 273, 453, 459
MboI GATC 3 cut(s) 271, 451, 457
MboII GAAGA 6 cut(s) 78, 113, 134, 189, 298, 304
MluCI AATT 5 cut(s) 170, 324, 410, 426, 444
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 6 cut(s) 97, 121, 255, 282, 340, 354
MseI TTAA 2 cut(s) 195, 499
Mva1269I GAATGC 1 cut(s) 235
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 265, 274
NcoI CCATGG 1 cut(s) 254
NdeII GATC 3 cut(s) 271, 451, 457
NlaIII CATG 3 cut(s) 88, 258, 458
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 88
PagI TCATGA 1 cut(s) 454
PctI GAATGC 1 cut(s) 235
PmaCI CACGTG 1 cut(s) 142
PmlI CACGTG 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 142
PspCI CACGTG 1 cut(s) 142
SaqAI TTAA 2 cut(s) 195, 499
Sau3AI GATC 3 cut(s) 271, 451, 457
SetI ASST 7 cut(s) 144, 240, 266, 309, 319, 369, 373
SfaNI GCATC 2 cut(s) 51, 360
Sse9I AATT 5 cut(s) 170, 324, 410, 426, 444
SsiI CCGC 2 cut(s) 7, 275
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 3 cut(s) 144, 240, 369
TaqI TCGA 1 cut(s) 120
TasI AATT 5 cut(s) 170, 324, 410, 426, 444
Tru1I TTAA 2 cut(s) 195, 499
Tru9I TTAA 2 cut(s) 195, 499
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 49, 218, 311, 460
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 1 cut(s) 24
XapI RAATTY 3 cut(s) 170, 410, 444
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.