Rroxscaffold_5G00360950

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000168
Physical Location & Seq
Reverse (-)
41579251 .. 41584190
4940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360950.1

Sequence Viewer

Length: 630 bp
ATGGGTAAAGGAGAACACCACCCTATCGCTCCCCTCGGAGCACACGTCGTCACGCGTGGATTCTCACCCCTATTTTTCCTCGGGGACCACGGGGCTCTCTCATGTTCCCAATCGGCGCCTCTATTCGATGGATTTCTTAAGTTGTATAGTACTCCTTTCTTTGTGCTCTCTCTCCTGGTTCTTAATCCAAGCCCTCCAGAGAAGAACCGAGTTAGGCTTCCACCGGGACCAAAGCCATATCCATTGATTGGTAATCTTTTCGAACTTGGAGACAAACCTCATCTCTCTTTGACCAAGCTTTCACAACACTATGGCCCCATAATGTCTTTGAAACTAGGCCAACTAACCACTATTGTAGTTTCTTCATCAACCATGGCCAAAGAAATCCTTCAAACCCATGACCAATTGTTTTGCAACCGAACAATCCCGGATGGGGTGCGAGTAGTAGCAGACAACTTGATCCGGATGCCAATATCACCAAGGTGGAGAAAGCTTCGCAAAATATGCAGCTCCCAATTGTTTGCCACCAAAGTTCTTGATGCCAACCATGCGACTCGGCAAGAGAAAGTGCAAGAGCTCATAGATAGTGTCAATGAGAGCATGGTACATGGTGTGGCGATGAGATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

209

Amino Acids

23.19

Weight (kDa)

9.6

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 74 - 199 2.8e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AccB7I CCANNNNNTGG 1 cut(s) 248
AccII CGCG 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 462
AclWI GGATC 1 cut(s) 454
AcoI YGGCCR 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 2 cut(s) 151, 606
AfiI CCNNNNNNNGG 2 cut(s) 248, 433
AflII CTTAAG 1 cut(s) 137
AflIII ACRYGT 2 cut(s) 43, 53
AgsI TTSAA 2 cut(s) 331, 392
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 174
AleI CACNNNNGTG 1 cut(s) 481
AluBI AGCT 4 cut(s) 298, 493, 510, 577
AluI AGCT 4 cut(s) 298, 493, 510, 577
Alw21I GWGCWC 3 cut(s) 43, 168, 579
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 1 cut(s) 454
Ama87I CYCGRG 1 cut(s) 80
Aor13HI TCCGGA 1 cut(s) 462
AoxI GGCC 3 cut(s) 313, 337, 375
ApeKI GCWGC 1 cut(s) 507
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 3 cut(s) 85, 227, 314
AsuC2I CCSGG 2 cut(s) 225, 428
AsuHPI GGTGA 2 cut(s) 57, 468
AsuII TTCGAA 1 cut(s) 261
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 2 cut(s) 85, 227
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 115
BanII GRGCYC 2 cut(s) 97, 579
Bbv12I GWGCWC 3 cut(s) 43, 168, 579
BbvI GCAGC 1 cut(s) 519
BccI CCATC 2 cut(s) 122, 425
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 2 cut(s) 225, 428
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 335
BfoI RGCGCY 1 cut(s) 119
BfrI CTTAAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 508
BlsI GCNGC 1 cut(s) 509
BmcAI AGTACT 1 cut(s) 151
Bme1390I CCNGG 3 cut(s) 176, 225, 428
Bme18I GGWCC 2 cut(s) 85, 227
BmeT110I CYCGRG 1 cut(s) 80
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 3 cut(s) 85, 227, 314
BmiI GGNNCC 4 cut(s) 86, 117, 228, 316
BmrFI CCNGG 3 cut(s) 176, 225, 428
BmsI GCATC 2 cut(s) 456, 529
BpmI CTGGAG 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 261
BpuMI CCSGG 2 cut(s) 225, 428
BsaHI GRCGYC 1 cut(s) 116
BsaJI CCNNGG 5 cut(s) 34, 79, 88, 372, 479
BsaWI WCCGGW 1 cut(s) 462
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 433
BseAI TCCGGA 1 cut(s) 462
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 5 cut(s) 34, 79, 88, 372, 479
BseGI GGATG 2 cut(s) 436, 471
BseLI CCNNNNNNNGG 2 cut(s) 248, 433
BseXI GCAGC 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 3 cut(s) 315, 339, 377
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 3 cut(s) 43, 168, 579
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 3 cut(s) 224, 428, 463
BslFI GGGAC 2 cut(s) 98, 240
BslI CCNNNNNNNGG 2 cut(s) 248, 433
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 98, 240
BsnI GGCC 3 cut(s) 315, 339, 377
BsoBI CYCGRG 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 43, 97, 168, 579
Bsp13I TCCGGA 1 cut(s) 462
Bsp143I GATC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 372
BspANI GGCC 3 cut(s) 315, 339, 377
BspEI TCCGGA 1 cut(s) 462
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 4 cut(s) 86, 117, 228, 316
BspPI GGATC 1 cut(s) 454
BspT104I TTCGAA 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 115
BspTI CTTAAG 1 cut(s) 137
BssECI CCNNGG 5 cut(s) 34, 79, 88, 372, 479
BssMI GATC 1 cut(s) 459
BssNI GRCGYC 1 cut(s) 116
BssT1I CCWWGG 2 cut(s) 372, 479
Bst2UI CCWGG 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 116
BstAFI CTTAAG 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 504
BstBI TTCGAA 1 cut(s) 261
BstDSI CCRYGG 2 cut(s) 88, 372
BstF5I GGATG 2 cut(s) 436, 471
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 1 cut(s) 462
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 1 cut(s) 459
BstMWI GCNNNNNNNGC 2 cut(s) 504, 548
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 3 cut(s) 174, 223, 426
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 519
BsuRI GGCC 3 cut(s) 315, 339, 377
BtgI CCRYGG 2 cut(s) 88, 372
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 2 cut(s) 436, 471
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 3 cut(s) 85, 227, 314
Csp6I GTAC 2 cut(s) 150, 605
CviAII CATG 6 cut(s) 102, 373, 398, 548, 601, 608
CviQI GTAC 2 cut(s) 150, 605
DinI GGCGCC 1 cut(s) 117
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
EaeI YGGCCR 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 2 cut(s) 372, 479
Eco24I GRGCYC 2 cut(s) 97, 579
Eco47I GGWCC 2 cut(s) 85, 227
Eco53kI GAGCTC 1 cut(s) 577
Eco88I CYCGRG 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 2 cut(s) 372, 479
EcoT38I GRGCYC 2 cut(s) 97, 579
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 2 cut(s) 372, 479
FaeI CATG 6 cut(s) 105, 376, 401, 551, 604, 611
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FaqI GGGAC 2 cut(s) 98, 240
FatI CATG 6 cut(s) 101, 372, 397, 547, 600, 607
Fnu4HI GCNGC 1 cut(s) 508
FokI GGATG 2 cut(s) 443, 478
FriOI GRGCYC 2 cut(s) 97, 579
Fsp4HI GCNGC 1 cut(s) 508
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 508
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 3 cut(s) 315, 339, 377
HapII CCGG 3 cut(s) 224, 428, 463
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 6 cut(s) 105, 376, 401, 551, 604, 611
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HindIII AAGCTT 2 cut(s) 296, 491
HinfI GANTC 2 cut(s) 60, 553
HpaII CCGG 3 cut(s) 224, 428, 463
HphI GGTGA 2 cut(s) 57, 468
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 197, 463, 536
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 414, 507, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 504, 548
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 6 cut(s) 105, 376, 401, 551, 604, 611
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 462
Kzo9I GATC 1 cut(s) 459
LmnI GCTCC 3 cut(s) 34, 38, 515
LpnPI CCDG 6 cut(s) 161, 188, 210, 237, 441, 476
Lsp1109I GCAGC 1 cut(s) 519
LweI GCATC 2 cut(s) 456, 529
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 461
MboI GATC 1 cut(s) 459
MboII GAAGA 2 cut(s) 214, 354
MfeI CAATTG 2 cut(s) 404, 515
MhlI GDGCHC 4 cut(s) 43, 97, 168, 579
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 2 cut(s) 404, 515
MluI ACGCGT 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 377
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 1 cut(s) 547
MnlI CCTC 5 cut(s) 44, 89, 129, 204, 288
Mox20I TGGCCA 1 cut(s) 377
MroI TCCGGA 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 377
MseI TTAA 2 cut(s) 138, 183
MslI CAYNNNNRTG 1 cut(s) 481
Msp20I TGGCCA 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 3 cut(s) 224, 428, 463
MspR9I CCNGG 3 cut(s) 176, 225, 428
MunI CAATTG 2 cut(s) 404, 515
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 504, 548
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 2 cut(s) 225, 428
NcoI CCATGG 1 cut(s) 372
NdeII GATC 1 cut(s) 459
NlaIII CATG 6 cut(s) 105, 376, 401, 551, 604, 611
NlaIV GGNNCC 4 cut(s) 86, 117, 228, 316
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 49
NspV TTCGAA 1 cut(s) 261
OliI CACNNNNGTG 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 60
PflMI CCANNNNNTGG 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 1 cut(s) 509
PleI GAGTC 1 cut(s) 547
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 547
Psp124BI GAGCTC 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 4 cut(s) 86, 117, 228, 316
PspPI GGNCC 3 cut(s) 85, 227, 314
RsaI GTAC 2 cut(s) 151, 606
RsaNI GTAC 2 cut(s) 150, 605
RseI CAYNNNNRTG 1 cut(s) 481
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 2 cut(s) 138, 183
SatI GCNGC 1 cut(s) 508
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 3 cut(s) 85, 227, 314
ScaI AGTACT 1 cut(s) 151
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 176, 225, 428
SduI GDGCHC 4 cut(s) 43, 97, 168, 579
SetI ASST 7 cut(s) 48, 280, 300, 485, 495, 512, 579
SfaNI GCATC 2 cut(s) 456, 529
SfoI GGCGCC 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 261
SinI GGWCC 2 cut(s) 85, 227
SmiMI CAYNNNNRTG 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 2 cut(s) 404, 515
SspDI GGCGCC 1 cut(s) 115
SspMI CTAG 1 cut(s) 335
SstI GAGCTC 1 cut(s) 579
StyD4I CCNGG 3 cut(s) 174, 223, 426
StyI CCWWGG 2 cut(s) 372, 479
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 126, 261
TasI AATT 2 cut(s) 404, 515
TatI WGTACW 1 cut(s) 149
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 2 cut(s) 138, 183
Tru9I TTAA 2 cut(s) 138, 183
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 507
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 248
Vha464I CTTAAG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 85, 227
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 1 cut(s) 335
ZrmI AGTACT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.