Rorug07G0180200

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
15070858 .. 15072393
1536 bp
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UTR
Exon/CDS
Intron
Rorug07G0180200.1

Sequence Viewer

Length: 1536 bp
ATGTGCTATCAGATGTCAAGTGTAGACATGTCAAACGAAGTTCAAATTTCCAATGCTAATTTGCAAGTGCAAAATATGGAGAGTGGAAGTGACATGAATCATCTGCAATATAATTGTGTTAGATTTGATAGATTGTCTGCGAATGATGTTCTAGGCAAGGAGTTTAAATCTATTGAGGAAGCAGAGATCTTTTATTTTGCTTACGCCAAGGCAATGGGGTTTAATGTTAAAAAGGATGACAAGTATGTAAGTGCAAGGACGGGGAGAGTCACAATCCGTCAATTAGTTTGTTCTGCACAAGGGAAGAGACGGGAGGAATATATGAACAATAGTAACAAGGTCCGTATGCCAAAAAAATTGACAAGGTGTAATTGTCCATGTTTGTTCAAGGTAAGATATTTTAAGAAGAAGAACTCGTATGTTGTAGTTGATTTCAAAACAAACCATTCCCATGATCTTGCACAACCACACGAGTCACATCTTCTCAAGTCACATCGATCTGTACCAGATTCTCATTTAGCATTAGCTAAATCTATGAGGAGAGTACCGATTAAGGTTTGTCATACATACCAATACATGGCTGACAGAGCTGGAGGCCTTACGAAAGTCGGTTTTCTAAGGAAAGATCTGTACAATAAGTTGGATATAAGTCGTCAAGAGACTCTACTTGAAGGGGATGCAAAAGCTGCACTTTCATATTTGGAAGGAAAAGCAGCCACAGACAAGAAGTTATTTTGCAAGTATAGCACAGATGAGAGTAACAGGTTGGCTAACTTGTTTTGGAGAGACTCAACTTCATTGCTTGATTATTCTTGTTTCGGAGATGTGTTGGTATTTGATAGCACGTACAAGACCAATCACTATGAGAAGCCGTTGGTATTATTTGCTGGTTCAAACCATCATTTATCGACTACGATTTTTGGTTTTGCATTACTAGTTGATGAGACGGTTGAGACATATACATGGGCTTTGCAAATGTTTTTAGAGTCTATGGAGGGCAAAAAACCCATTGCTATGCTAACTGATGGAGATGAAGCAATGCGGAAGGCTATTGAAGTAGTATTTCCAAATTGCCCACATCGTTTATGTACATGGCATATTGGAAAGAATGCTCAAAGTAACTTGCATAATCCAGAAGTAATTGCAGAGTTTCGGAGATGTATGTTTGATGAAGCAACCCCATATGGTTTTGAGCAACGGTGGAATGATATGGTGAACAAATTTGATCTTCATGATAAAAATTGGGTAAGGATGATGTATGAAAAACGGCATAAATGGGCTGAAGCATTTATTAGTGGTCACTTTTTTGCTCGAATGCGTAGTACCCAGCGGTCTGAGGGCATGAACAATTGTGTGAAAGATTATCTTAGCACCGGAGTGAAATTGTTTGAACTGATGCCACTACTTGATTCAGCATTAGCACGGCTTAGAAATAATGTACTTCAAGAAGACTTTCGATCAAATAACTCTAGTCATGTGCTTAATTACTACTCAACTCCGACAGTTGGAGAAACATGCATCCACCATTTACACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

59.18

Weight (kDa)

8.8

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 64 - 154 6e-16 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 244 - 358 3e-09 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 276 - 370 8.6e-28 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 577
AccI GTMKAC 1 cut(s) 24
AciI CCGC 2 cut(s) 1042, 1330
AcsI RAATTY 2 cut(s) 45, 1220
AcuI CTGAAG 1 cut(s) 1302
AfaI GTAC 7 cut(s) 504, 546, 632, 848, 1090, 1324, 1440
AfiI CCNNNNNNNGG 2 cut(s) 577, 1505
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 8 cut(s) 44, 388, 436, 671, 894, 1055, 1391, 1445
AhlI ACTAGT 1 cut(s) 934
AleI CACNNNNGTG 1 cut(s) 1376
AluBI AGCT 3 cut(s) 527, 590, 686
AluI AGCT 3 cut(s) 527, 590, 686
Alw26I GTCTC 5 cut(s) 301, 653, 780, 938, 947
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 686, 713
ApoI RAATTY 2 cut(s) 45, 1220
Asp700I GAANNNNTTC 1 cut(s) 1452
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 1225
AvaII GGWCC 1 cut(s) 340
BauI CACGAG 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 1455
BbvI GCAGC 2 cut(s) 673, 725
BccI CCATC 2 cut(s) 906, 1019
BceAI ACGGC 3 cut(s) 856, 1283, 1439
BcoDI GTCTC 5 cut(s) 301, 653, 780, 938, 947
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 3 cut(s) 152, 935, 1470
BglII AGATCT 2 cut(s) 186, 625
BisI GCNGC 2 cut(s) 687, 714
BlsI GCNGC 2 cut(s) 688, 715
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmsI GCATC 3 cut(s) 667, 1386, 1527
BpiI GAAGAC 1 cut(s) 1455
BpmI CTGGAG 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 470
Bsa29I ATCGAT 1 cut(s) 496
BsaAI YACGTR 1 cut(s) 846
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 1373
Bsc4I CCNNNNNNNGG 2 cut(s) 577, 1505
Bse3DI GCAATG 4 cut(s) 219, 797, 1008, 1044
BseCI ATCGAT 1 cut(s) 496
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 4 cut(s) 241, 682, 1257, 1518
BseLI CCNNNNNNNGG 2 cut(s) 577, 1505
BseMI GCAATG 4 cut(s) 219, 797, 1008, 1044
BseMII CTCAG 1 cut(s) 1326
BseRI GAGGAG 1 cut(s) 553
BseXI GCAGC 2 cut(s) 673, 725
BseYI CCCAGC 1 cut(s) 1326
BsgI GTGCAG 2 cut(s) 279, 672
BshFI GGCC 1 cut(s) 597
BshVI ATCGAT 1 cut(s) 496
BsiSI CCGG 1 cut(s) 1374
BslI CCNNNNNNNGG 2 cut(s) 577, 1505
BsmAI GTCTC 5 cut(s) 301, 653, 780, 938, 947
BsmBI CGTCTC 2 cut(s) 301, 938
BsmI GAATGC 2 cut(s) 1114, 1320
BsnI GGCC 1 cut(s) 597
Bsp1407I TGTACA 2 cut(s) 630, 1088
Bsp143I GATC 6 cut(s) 186, 454, 497, 625, 1225, 1457
BspACI CCGC 2 cut(s) 1042, 1330
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 1 cut(s) 1327
BspDI ATCGAT 1 cut(s) 496
BspHI TCATGA 1 cut(s) 1231
BsrDI GCAATG 4 cut(s) 219, 797, 1008, 1044
BsrGI TGTACA 2 cut(s) 630, 1088
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 6 cut(s) 186, 454, 497, 625, 1225, 1457
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 470
Bst4CI ACNGT 3 cut(s) 949, 1200, 1504
Bst6I CTCTTC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 686
BstAUI TGTACA 2 cut(s) 630, 1088
BstBAI YACGTR 1 cut(s) 846
BstDEI CTNAG 4 cut(s) 617, 1335, 1367, 1427
BstF5I GGATG 4 cut(s) 241, 682, 1257, 1518
BstKTI GATC 6 cut(s) 189, 457, 500, 628, 1228, 1460
BstMAI GTCTC 5 cut(s) 301, 653, 780, 938, 947
BstMBI GATC 6 cut(s) 186, 454, 497, 625, 1225, 1457
BstMWI GCNNNNNNNGC 3 cut(s) 587, 686, 744
BstNSI RCATGY 2 cut(s) 31, 1518
BstV1I GCAGC 2 cut(s) 673, 725
BstV2I GAAGAC 1 cut(s) 1455
BstX2I RGATCY 2 cut(s) 186, 625
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 2 cut(s) 186, 625
Bsu15I ATCGAT 1 cut(s) 496
BsuRI GGCC 1 cut(s) 597
BsuTUI ATCGAT 1 cut(s) 496
BtsCI GGATG 4 cut(s) 241, 682, 1257, 1518
BtsIMutI CAGTG 1 cut(s) 1531
CciI TCATGA 1 cut(s) 1231
Cfr13I GGNCC 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 496
Csp6I GTAC 7 cut(s) 503, 545, 631, 847, 1089, 1323, 1439
CviQI GTAC 7 cut(s) 503, 545, 631, 847, 1089, 1323, 1439
DdeI CTNAG 4 cut(s) 617, 1335, 1367, 1427
DpnI GATC 6 cut(s) 188, 456, 499, 627, 1227, 1459
DpnII GATC 6 cut(s) 186, 454, 497, 625, 1225, 1457
DraI TTTAAA 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 207
Eco147I AGGCCT 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 1302
EcoT14I CCWWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 1520
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 2 cut(s) 301, 938
FalI AAGNNNNNCTT 4 cut(s) 675, 707, 1350, 1382
FauNDI CATATG 1 cut(s) 1183
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 687, 714
FokI GGATG 4 cut(s) 248, 689, 1264, 1505
Fsp4HI GCNGC 2 cut(s) 687, 714
FspBI CTAG 3 cut(s) 152, 935, 1470
GluI GCNGC 2 cut(s) 687, 714
GsaI CCCAGC 1 cut(s) 1330
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 1 cut(s) 597
HapII CCGG 1 cut(s) 1374
HinfI GANTC 8 cut(s) 97, 267, 473, 509, 661, 788, 986, 1409
HpaII CCGG 1 cut(s) 1374
HphI GGTGA 1 cut(s) 1225
Hpy166II GTNNAC 2 cut(s) 25, 1216
Hpy188I TCNGA 5 cut(s) 12, 821, 1155, 1336, 1500
Hpy188III TCNNGA 4 cut(s) 656, 1133, 1232, 1445
Hpy8I GTNNAC 2 cut(s) 25, 1216
HpyAV CCTTC 3 cut(s) 665, 698, 1039
HpyCH4III ACNGT 3 cut(s) 949, 1200, 1504
HpyCH4IV ACGT 1 cut(s) 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 587, 686, 744
HpyF3I CTNAG 4 cut(s) 617, 1335, 1367, 1427
HpySE526I ACGT 1 cut(s) 845
Kzo9I GATC 6 cut(s) 186, 454, 497, 625, 1225, 1457
LpnPI CCDG 7 cut(s) 519, 576, 748, 873, 1146, 1340, 1387
Lsp1109I GCAGC 2 cut(s) 673, 725
LweI GCATC 3 cut(s) 667, 1386, 1527
MaeI CTAG 3 cut(s) 152, 935, 1470
MaeII ACGT 1 cut(s) 845
MaeIII GTNAC 8 cut(s) 89, 268, 332, 474, 489, 758, 1118, 1298
MalI GATC 6 cut(s) 188, 456, 499, 627, 1227, 1459
MboI GATC 6 cut(s) 186, 454, 497, 625, 1225, 1457
MboII GAAGA 6 cut(s) 316, 418, 421, 473, 1220, 1460
MfeI CAATTG 1 cut(s) 1348
MflI RGATCY 2 cut(s) 186, 625
MlyI GAGTC 5 cut(s) 276, 482, 655, 782, 995
MmeI TCCRAC 3 cut(s) 621, 1486, 1523
MnlI CCTC 6 cut(s) 169, 307, 531, 587, 988, 1330
Mph1103I ATGCAT 1 cut(s) 1520
MroXI GAANNNNTTC 1 cut(s) 1452
MseI TTAA 6 cut(s) 165, 222, 228, 402, 552, 1482
MslI CAYNNNNRTG 4 cut(s) 450, 961, 1013, 1376
MspA1I CMGCKG 1 cut(s) 1330
MspI CCGG 1 cut(s) 1374
MunI CAATTG 1 cut(s) 1348
Mva1269I GAATGC 2 cut(s) 1114, 1320
MwoI GCNNNNNNNGC 3 cut(s) 587, 686, 744
NdeI CATATG 1 cut(s) 1183
NdeII GATC 6 cut(s) 186, 454, 497, 625, 1225, 1457
NmuCI GTSAC 5 cut(s) 89, 268, 474, 489, 1298
NsiI ATGCAT 1 cut(s) 1520
NspI RCATGY 2 cut(s) 31, 1518
OliI CACNNNNGTG 1 cut(s) 1376
PagI TCATGA 1 cut(s) 1231
PceI AGGCCT 1 cut(s) 597
PciI ACATGT 1 cut(s) 27
PctI GAATGC 2 cut(s) 1114, 1320
PdmI GAANNNNTTC 1 cut(s) 1452
PfeI GAWTC 3 cut(s) 97, 509, 1409
PflMI CCANNNNNTGG 1 cut(s) 577
PkrI GCNGC 2 cut(s) 688, 715
PleI GAGTC 5 cut(s) 275, 481, 655, 782, 994
PpsI GAGTC 5 cut(s) 275, 481, 655, 782, 994
Ppu21I YACGTR 1 cut(s) 846
PscI ACATGT 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 1326
PspPI GGNCC 1 cut(s) 340
PsuI RGATCY 2 cut(s) 186, 625
RsaI GTAC 7 cut(s) 504, 546, 632, 848, 1090, 1324, 1440
RsaNI GTAC 7 cut(s) 503, 545, 631, 847, 1089, 1323, 1439
RseI CAYNNNNRTG 4 cut(s) 450, 961, 1013, 1376
SaqAI TTAA 6 cut(s) 165, 222, 228, 402, 552, 1482
SatI GCNGC 2 cut(s) 687, 714
Sau3AI GATC 6 cut(s) 186, 454, 497, 625, 1225, 1457
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 5 cut(s) 276, 482, 655, 782, 995
SetI ASST 9 cut(s) 342, 368, 393, 529, 558, 592, 688, 767, 848
SfaNI GCATC 3 cut(s) 667, 1386, 1527
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 4 cut(s) 450, 961, 1013, 1376
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 934
SseBI AGGCCT 1 cut(s) 597
SsiI CCGC 2 cut(s) 1042, 1330
SspMI CTAG 3 cut(s) 152, 935, 1470
StuI AGGCCT 1 cut(s) 597
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 949, 1200, 1504
TaiI ACGT 1 cut(s) 848
TaqI TCGA 4 cut(s) 496, 908, 1312, 1456
TatI WGTACW 3 cut(s) 630, 1088, 1438
TfiI GAWTC 3 cut(s) 97, 509, 1409
Tru1I TTAA 6 cut(s) 165, 222, 228, 402, 552, 1482
Tru9I TTAA 6 cut(s) 165, 222, 228, 402, 552, 1482
TseFI GTSAC 5 cut(s) 89, 268, 474, 489, 1298
TseI GCWGC 2 cut(s) 686, 713
Tsp45I GTSAC 5 cut(s) 89, 268, 474, 489, 1298
TspDTI ATGAA 9 cut(s) 110, 338, 684, 786, 1047, 1185, 1220, 1275, 1358
TspGWI ACGGA 2 cut(s) 266, 332
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 2 cut(s) 45, 1220
XceI RCATGY 2 cut(s) 31, 1518
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 1452
XspI CTAG 3 cut(s) 152, 935, 1470
Zsp2I ATGCAT 1 cut(s) 1520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.