Rroxscaffold_5G00372500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000168
Physical Location & Seq
Reverse (-)
53946543 .. 53947073
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372500.1

Sequence Viewer

Length: 531 bp
ATGGCTGAGCTACTGCGCAACCCAGAAATTATGTCTAAAGCTAAAGCAGAGCTTGGGCAAATTATTGGAAAAGAAAAGCTAGTTGAGGAATCTGACATTACTCGACTTCCTTACTTGCAAGCAATAACCAAAGAAACTTTTCGATTACATCCAGTAGCACCATTTCTTATTCCACGAAAAGTTGAATTAGATGTAGAAATCGGAGGGTACATTGTCCCAAAGGATACACAAGTTCTAATCAATGCTTGGGCCATAGGCAGAGACCCCGACACTTGGGACAATCCAGACTTGTTTAAGCCGGAAAGATTTCTAGGATTAAGCAATGAAATTGATATTACGGGAAGAAACTTTGAGCTTATTCCATTTGGTGGTGGGAGGAGGATATGTCCTGGATTGCCTTTGGCAATGAGAATGTTATACTTGATGTTGGGTTCACTTATTAATTGCTTACATTTGTATGATCTCGCTTTGAAATTAATAGTTCCGCGACGCAAGTGGTGTTTACCAATCTCCATCAAGTTGGTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

176

Amino Acids

19.99

Weight (kDa)

8.44

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 147 3.2e-51 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 368
AccII CGCG 1 cut(s) 487
AciI CCGC 1 cut(s) 485
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 273, 368
AgsI TTSAA 2 cut(s) 185, 472
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 5 cut(s) 10, 41, 52, 79, 355
AluI AGCT 5 cut(s) 10, 41, 52, 79, 355
Alw26I GTCTC 1 cut(s) 255
AoxI GGCC 1 cut(s) 249
AseI ATTAAT 2 cut(s) 441, 476
Asp700I GAANNNNTTC 2 cut(s) 138, 306
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 249
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BccI CCATC 1 cut(s) 521
BciT130I CCWGG 1 cut(s) 390
BciVI GTATCC 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 2 cut(s) 80, 311
BfuI GTATCC 1 cut(s) 217
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 390
Bpu1102I GCTNAGC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 368
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 2 cut(s) 328, 411
BseBI CCWGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 273, 368
BseMI GCAATG 2 cut(s) 328, 411
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 487
BshFI GGCC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 2 cut(s) 200, 290
BslI CCNNNNNNNGG 2 cut(s) 273, 368
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 2 cut(s) 200, 290
BsnI GGCC 1 cut(s) 251
Bso31I GGTCTC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 460
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 1 cut(s) 485
BspANI GGCC 1 cut(s) 251
BspFNI CGCG 1 cut(s) 487
BspTNI GGTCTC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 328, 411
BsrI ACTGG 1 cut(s) 152
BssMI GATC 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 487
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 463
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 460
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstUI CGCG 1 cut(s) 487
BstXI CCANNNNNNTGG 1 cut(s) 520
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 249
CseI GACGC 1 cut(s) 498
Csp6I GTAC 1 cut(s) 208
CviJI RGCY 8 cut(s) 5, 10, 41, 52, 79, 251, 298, 355
CviKI_1 RGCY 8 cut(s) 5, 10, 41, 52, 79, 251, 298, 355
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
Eco31I GGTCTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 388
FaiI YATR 5 cut(s) 32, 254, 385, 418, 459
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FaqI GGGAC 2 cut(s) 200, 290
FokI GGATG 1 cut(s) 135
FspBI CTAG 2 cut(s) 80, 311
FspI TGCGCA 1 cut(s) 17
GlaI GCGC 1 cut(s) 17
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 299
HgaI GACGC 1 cut(s) 498
HhaI GCGC 1 cut(s) 18
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 434, 503
Hpy188I TCNGA 2 cut(s) 94, 203
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 2 cut(s) 434, 503
Hpy99I CGWCG 1 cut(s) 492
HpyCH4V TGCA 1 cut(s) 118
HpyF3I CTNAG 1 cut(s) 6
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 460
LpnPI CCDG 6 cut(s) 36, 165, 297, 312, 375, 402
MaeI CTAG 2 cut(s) 80, 311
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 1 cut(s) 354
MluCI AATT 6 cut(s) 27, 60, 185, 327, 442, 473
MnlI CCTC 4 cut(s) 79, 197, 369, 372
MroXI GAANNNNTTC 2 cut(s) 138, 306
MseI TTAA 4 cut(s) 294, 317, 441, 476
MslI CAYNNNNRTG 1 cut(s) 456
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MvnI CGCG 1 cut(s) 487
NdeII GATC 1 cut(s) 460
NsbI TGCGCA 1 cut(s) 17
PdmI GAANNNNTTC 2 cut(s) 138, 306
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 368
PfoI TCCNGGA 1 cut(s) 388
PshBI ATTAAT 2 cut(s) 441, 476
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspPI GGNCC 1 cut(s) 249
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 4 cut(s) 294, 317, 441, 476
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 390
SetI ASST 5 cut(s) 12, 43, 54, 81, 357
SmiMI CAYNNNNRTG 1 cut(s) 456
Sse9I AATT 6 cut(s) 27, 60, 185, 327, 442, 473
SsiI CCGC 1 cut(s) 485
SspMI CTAG 2 cut(s) 80, 311
StyD4I CCNGG 1 cut(s) 388
TaqI TCGA 2 cut(s) 103, 142
TasI AATT 6 cut(s) 27, 60, 185, 327, 442, 473
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 4 cut(s) 294, 317, 441, 476
Tru9I TTAA 4 cut(s) 294, 317, 441, 476
TspDTI ATGAA 1 cut(s) 339
Van91I CCANNNNNTGG 1 cut(s) 368
VspI ATTAAT 2 cut(s) 441, 476
XmnI GAANNNNTTC 2 cut(s) 138, 306
XspI CTAG 2 cut(s) 80, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.