Rh4CG318900

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000168
Physical Location & Seq
Forward (+)
58133131 .. 58134217
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG318900.1

Sequence Viewer

Length: 960 bp
ATGGAGTTCTTGAGCTTCATGCTCTTATGTCTTGGCTTTGCCTGGGTCTGCAGCCGAGCCTTGCTTTCACTTGCAAGAAAAAGCAAAGCCATACCCAGAAGGCTTCTTCCACCAGGACCAAAGCCATTTCCACTTATCGGAAATCTCCTTGAGCTCGAAGACAAACCCCACCACTCCCTCACTAAGCTTTCCAAACGCTACGGCCCCATAATCAGTTTACAACTTGGCCAAGTAACCACAGTTGTAGTTTCCTCACCAACGCTAGCCAAAGATATCCTCCAAACCCATGACCAAATCCTCTGCAACCGAAACCTCCCAGATGGTGCCCACGCCTGCAATCACTCCGAGTACAGCTTGCCCTGGCTACCTGTGTCACCAAAATGGAGAAACCTTCGTAGAATATGCAACTCCTATTTGTTTGCCACCAAAGTTTTGGATGCCAACAAAGACTGCCGGCGCGTGAAGGTGCAGCAGCTCATTGAGGATGTTGATGAAAGCATGAGGGCGGGTAATGCAGTCGACATCGGAAGGGCAGCTTTCGCAACTACGCTGAATCTGTTGTCCCGGACTATCTTCTCGGTTGATCTAGCTGACCCGAGTAGCGAGACGGCTAGGAAGTTCAAGGACAATATTAGGGGTATGATGGAAGATGTGGGGAAACCAAACTTGGTGGACTTTTTTCCTTTGCTTAGGAAGATTGACCCCCAAGGAATAAGGCGGCGCTTGACCAAATATGTCCTGGAAACTGTGGTCTACTTCAAAGGCATGATCGATCAAAGGTTGGAATCAAGAAAAGGGAAACAATATGTCACAAGTAATGATATGTTGGATATCCTTATAAACATCAGTGAAGAGGGAAATGAGGATATGGACGAGACACAAATTGAACATTTCATTCTGGTTAGTCTTTCTAGTTATGTCCTAGTCTTCTCTGTTGTTCTTGATTACTTCCATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

319

Amino Acids

36.3

Weight (kDa)

8.81

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 300 3.4e-31 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 839
AccB1I GGYRCC 1 cut(s) 323
AccI GTMKAC 2 cut(s) 519, 753
AccII CGCG 1 cut(s) 459
AciI CCGC 2 cut(s) 506, 718
AcoI YGGCCR 1 cut(s) 226
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 3 cut(s) 622, 760, 887
AjnI CCWGG 4 cut(s) 41, 112, 359, 738
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
AluBI AGCT 7 cut(s) 15, 154, 187, 354, 475, 536, 590
AluI AGCT 7 cut(s) 15, 154, 187, 354, 475, 536, 590
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 599, 869
Ama87I CYCGRG 1 cut(s) 595
AoxI GGCC 2 cut(s) 202, 226
ApeKI GCWGC 4 cut(s) 51, 469, 472, 533
AspLEI GCGC 2 cut(s) 459, 723
AspS9I GGNCC 2 cut(s) 116, 203
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 2 cut(s) 246, 366
AsuNHI GCTAGC 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 595
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 328
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 165, 919
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 4 cut(s) 63, 481, 484, 545
BccI CCATC 2 cut(s) 314, 637
BceAI ACGGC 2 cut(s) 217, 624
BciT130I CCWGG 4 cut(s) 43, 114, 361, 740
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 599, 869
BfaI CTAG 5 cut(s) 263, 587, 612, 912, 923
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 724
BisI GCNGC 5 cut(s) 52, 470, 473, 534, 719
BlsI GCNGC 5 cut(s) 53, 471, 474, 535, 720
Bme1390I CCNGG 5 cut(s) 43, 114, 361, 565, 740
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 116, 203
BmiI GGNNCC 2 cut(s) 205, 325
BmrFI CCNGG 5 cut(s) 43, 114, 361, 565, 740
BmsI GCATC 1 cut(s) 427
BmtI GCTAGC 1 cut(s) 266
BpiI GAAGAC 2 cut(s) 165, 919
Bpu10I CCTNAGC 1 cut(s) 689
BpuEI CTTGAG 2 cut(s) 31, 170
BpuMI CCSGG 1 cut(s) 565
Bsa29I ATCGAT 1 cut(s) 771
BsaJI CCNNGG 3 cut(s) 42, 359, 706
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 453
BseBI CCWGG 4 cut(s) 43, 114, 361, 740
BseCI ATCGAT 1 cut(s) 771
BseDI CCNNGG 3 cut(s) 42, 359, 706
BseGI GGATG 2 cut(s) 442, 490
BseLI CCNNNNNNNGG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 4 cut(s) 63, 481, 484, 545
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 1 cut(s) 459
BshFI GGCC 2 cut(s) 204, 228
BshNI GGYRCC 1 cut(s) 323
BshVI ATCGAT 1 cut(s) 771
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 595
BsiSI CCGG 2 cut(s) 454, 565
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 599, 869
BsmBI CGTCTC 1 cut(s) 599
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 2 cut(s) 204, 228
BsoBI CYCGRG 1 cut(s) 595
Bsp1286I GDGCHC 2 cut(s) 156, 328
Bsp143I GATC 3 cut(s) 583, 768, 772
BspACI CCGC 2 cut(s) 506, 718
BspANI GGCC 2 cut(s) 204, 228
BspDI ATCGAT 1 cut(s) 771
BspFNI CGCG 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 205, 325
BspMAI CTGCAG 1 cut(s) 53
BspOI GCTAGC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 3 cut(s) 42, 359, 706
BssMI GATC 3 cut(s) 583, 768, 772
BssT1I CCWWGG 1 cut(s) 706
Bst2UI CCWGG 4 cut(s) 43, 114, 361, 740
Bst4CI ACNGT 2 cut(s) 241, 748
Bst6I CTCTTC 1 cut(s) 846
BstC8I GCNNGC 4 cut(s) 264, 334, 356, 455
BstDEI CTNAG 2 cut(s) 183, 689
BstF5I GGATG 2 cut(s) 442, 490
BstFNI CGCG 1 cut(s) 459
BstH2I RGCGCY 1 cut(s) 724
BstHHI GCGC 2 cut(s) 459, 723
BstKTI GATC 3 cut(s) 586, 771, 775
BstMAI GTCTC 2 cut(s) 599, 869
BstMBI GATC 3 cut(s) 583, 768, 772
BstMWI GCNNNNNNNGC 2 cut(s) 512, 539
BstNI CCWGG 4 cut(s) 43, 114, 361, 740
BstSCI CCNGG 5 cut(s) 41, 112, 359, 563, 738
BstSFI CTRYAG 1 cut(s) 49
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 1 cut(s) 459
BstV1I GCAGC 4 cut(s) 63, 481, 484, 545
BstV2I GAAGAC 2 cut(s) 165, 919
BstXI CCANNNNNNTGG 1 cut(s) 433
Bsu15I ATCGAT 1 cut(s) 771
BsuRI GGCC 2 cut(s) 204, 228
BsuTUI ATCGAT 1 cut(s) 771
BtsCI GGATG 2 cut(s) 442, 490
BtsIMutI CAGTG 1 cut(s) 853
Cac8I GCNNGC 4 cut(s) 264, 334, 356, 455
CfoI GCGC 2 cut(s) 459, 723
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 2 cut(s) 116, 203
ClaI ATCGAT 1 cut(s) 771
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 4 cut(s) 19, 287, 499, 766
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 2 cut(s) 183, 689
DpnI GATC 3 cut(s) 585, 770, 774
DpnII GATC 3 cut(s) 583, 768, 772
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 156
Eco32I GATATC 2 cut(s) 274, 832
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 4 cut(s) 41, 112, 359, 738
EcoRV GATATC 2 cut(s) 274, 832
EcoT14I CCWWGG 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 706
Esp3I CGTCTC 1 cut(s) 599
FaeI CATG 4 cut(s) 22, 290, 502, 769
FalI AAGNNNNNCTT 2 cut(s) 520, 552
FaqI GGGAC 1 cut(s) 547
FatI CATG 4 cut(s) 18, 286, 498, 765
FauI CCCGC 1 cut(s) 499
FblI GTMKAC 2 cut(s) 519, 753
Fnu4HI GCNGC 5 cut(s) 52, 470, 473, 534, 719
FokI GGATG 2 cut(s) 449, 497
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 5 cut(s) 52, 470, 473, 534, 719
FspBI CTAG 5 cut(s) 263, 587, 612, 912, 923
GlaI GCGC 2 cut(s) 458, 722
GluI GCNGC 5 cut(s) 52, 470, 473, 534, 719
HaeII RGCGCY 1 cut(s) 724
HaeIII GGCC 2 cut(s) 204, 228
HapII CCGG 2 cut(s) 454, 565
HhaI GCGC 2 cut(s) 459, 723
Hin1II CATG 4 cut(s) 22, 290, 502, 769
Hin6I GCGC 2 cut(s) 457, 721
HinP1I GCGC 2 cut(s) 457, 721
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 553, 785
HpaII CCGG 2 cut(s) 454, 565
HphI GGTGA 2 cut(s) 246, 366
Hpy166II GTNNAC 4 cut(s) 218, 520, 673, 754
Hpy188I TCNGA 3 cut(s) 140, 346, 527
Hpy188III TCNNGA 3 cut(s) 10, 789, 941
Hpy8I GTNNAC 4 cut(s) 218, 520, 673, 754
HpyAV CCTTC 4 cut(s) 93, 401, 457, 522
HpyCH4III ACNGT 2 cut(s) 241, 748
HpyCH4V TGCA 7 cut(s) 51, 74, 303, 336, 405, 469, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 539
HpyF3I CTNAG 2 cut(s) 183, 689
Hsp92II CATG 4 cut(s) 22, 290, 502, 769
HspAI GCGC 2 cut(s) 457, 721
KroI GCCGGC 1 cut(s) 453
KroNI GCCGGC 1 cut(s) 455
Kzo9I GATC 3 cut(s) 583, 768, 772
Lsp1109I GCAGC 4 cut(s) 63, 481, 484, 545
LweI GCATC 1 cut(s) 427
MaeI CTAG 5 cut(s) 263, 587, 612, 912, 923
MaeIII GTNAC 3 cut(s) 232, 372, 808
MalI GATC 3 cut(s) 585, 770, 774
MboI GATC 3 cut(s) 583, 768, 772
MboII GAAGA 7 cut(s) 98, 170, 565, 659, 706, 863, 919
MhlI GDGCHC 2 cut(s) 156, 328
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 1 cut(s) 882
MluNI TGGCCA 1 cut(s) 228
MmeI TCCRAC 2 cut(s) 762, 807
MnlI CCTC 9 cut(s) 188, 262, 287, 308, 323, 475, 495, 847, 856
Mox20I TGGCCA 1 cut(s) 228
MroNI GCCGGC 1 cut(s) 453
MscI TGGCCA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 379
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 2 cut(s) 454, 565
MspR9I CCNGG 5 cut(s) 43, 114, 361, 565, 740
MvaI CCWGG 4 cut(s) 43, 114, 361, 740
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 2 cut(s) 512, 539
NaeI GCCGGC 1 cut(s) 455
NciI CCSGG 1 cut(s) 565
NdeII GATC 3 cut(s) 583, 768, 772
NgoMIV GCCGGC 1 cut(s) 453
NheI GCTAGC 1 cut(s) 262
NlaIII CATG 4 cut(s) 22, 290, 502, 769
NlaIV GGNNCC 2 cut(s) 205, 325
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 372, 808
PdiI GCCGGC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 553, 785
PfoI TCCNGGA 2 cut(s) 563, 738
PkrI GCNGC 5 cut(s) 53, 471, 474, 535, 720
PsiI TTATAA 1 cut(s) 839
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 4 cut(s) 41, 112, 359, 738
PspGI CCWGG 4 cut(s) 41, 112, 359, 738
PspN4I GGNNCC 2 cut(s) 205, 325
PspPI GGNCC 2 cut(s) 116, 203
PstI CTGCAG 1 cut(s) 53
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 379
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 518
SatI GCNGC 5 cut(s) 52, 470, 473, 534, 719
Sau3AI GATC 3 cut(s) 583, 768, 772
Sau96I GGNCC 2 cut(s) 116, 203
ScrFI CCNGG 5 cut(s) 43, 114, 361, 565, 740
SduI GDGCHC 2 cut(s) 156, 328
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 49
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 379
SmlI CTYRAG 2 cut(s) 10, 149
SmoI CTYRAG 2 cut(s) 10, 149
Sse9I AATT 1 cut(s) 882
SsiI CCGC 2 cut(s) 506, 718
SspI AATATT 1 cut(s) 631
SspMI CTAG 5 cut(s) 263, 587, 612, 912, 923
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 5 cut(s) 41, 112, 359, 563, 738
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 2 cut(s) 241, 748
TaqI TCGA 3 cut(s) 156, 519, 771
TasI AATT 1 cut(s) 882
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 2 cut(s) 553, 785
TscAI CASTG 1 cut(s) 853
TseFI GTSAC 2 cut(s) 372, 808
TseI GCWGC 4 cut(s) 51, 469, 472, 533
Tsp45I GTSAC 2 cut(s) 372, 808
TspDTI ATGAA 3 cut(s) 7, 507, 883
TspRI CASTG 1 cut(s) 853
VpaK11BI GGWCC 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 2 cut(s) 430, 736
XmiI GTMKAC 2 cut(s) 519, 753
XspI CTAG 5 cut(s) 263, 587, 612, 912, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.