FvH4_4g24070

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000168
Physical Location & Seq
Reverse (-)
26363151 .. 26365859
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24070.t1

Sequence Viewer

Length: 1011 bp
ATGAGGGCCGGCGAGGCCGTAGATATCGGAAAAGCTGCTTTCACAACCGCGCTCAATCTGATGTCGCAGACTATCTTCTCTGTGGATTTGGCTGACCCGAGTAGCAGGACAGCTAAGGAGTTCAAGGAGACTATTTGGGGTATAATGGAAGAGGCAGGGAAACCAAACTTGGTGGACTTTTTCCCTTTGCTAAGGAAGATTGACCCACAAGGTATAAACCGGCGCCAAACCAACTACTTCAAGAAGATGATAGACTTCTTTGATCGAATGATGGATCAAAGGTTGCAATCAAGAAAAGAGGACAGTTATATCACAACCGATGATATGTTGGATACACTTCTGAACATCAGTGAAGTGAAAAGGGAGGACATGGATATTCTGGAAACTCAACATTTGTTTCTGGACCTATTTGCTGCTGGCACAGAGACAACTTCAGCCACATTGGAATGGGCAATGGCTGAGCTACTATGCAACCAAGAAGTCCTCTCCAAAGCTCAAACGGAACTCAAGCAAGAAATCGGAAAAGGGAAGTTAGTTGAGGAATCCGACATTGTTCGTCTCCCTTACTTACAAGCAATAATCAAAGAAACATTTCGGCTCCACCCAACATTTCCATTGCTACTCCCCCGAAAGTCAGGGGCTAACATAGAAATCGGCGGGTACATAATCCCGGAGGGTGCACAAGTTCTGATCAATGTTTGGGCCATTGGCAGAGATCCCCTTACTTGGGAGAACCCAAATTTGTTCATGCCGGAGAGGTTTTTGGGAGAAGACAACCAAATTGATTTTACGGGAAGAAACTTTGAGCTAATTCCATTTGGTGGTGGGAGGAGAATATGTCCTGGATTGCCATTGGCAATAAGAATGTTACACTTGATGTTGGGTTCATTGCTTAACAACTCTGACTGGAAGCTTGAAGATGGAGTCGTCGCTGAGACTATGAATATGGACGAGAAGTTTGGCTTAACGCTACAGAAGGCTCAACCTCTAAGAGTTGTACCCAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

337

Amino Acids

38.17

Weight (kDa)

5.06

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 325 2.6e-77 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 222
AccB7I CCANNNNNTGG 1 cut(s) 821
AccII CGCG 1 cut(s) 50
AciI CCGC 2 cut(s) 48, 657
AclWI GGATC 2 cut(s) 282, 710
AcsI RAATTY 1 cut(s) 739
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 223
AfaI GTAC 2 cut(s) 662, 999
AfiI CCNNNNNNNGG 3 cut(s) 726, 727, 821
AgsI TTSAA 3 cut(s) 124, 241, 917
AjnI CCWGG 1 cut(s) 841
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 6 cut(s) 35, 113, 463, 494, 808, 913
AluI AGCT 6 cut(s) 35, 113, 463, 494, 808, 913
Alw21I GWGCWC 1 cut(s) 682
Alw26I GTCTC 4 cut(s) 122, 419, 563, 929
Alw44I GTGCAC 1 cut(s) 678
AlwI GGATC 2 cut(s) 282, 710
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 3 cut(s) 6, 15, 702
ApaLI GTGCAC 1 cut(s) 678
ApeKI GCWGC 2 cut(s) 35, 413
ApoI RAATTY 1 cut(s) 739
ArsI GACNNNNNNTTYG 2 cut(s) 941, 973
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 2 cut(s) 52, 225
AspS9I GGNCC 3 cut(s) 6, 403, 702
AsuC2I CCSGG 1 cut(s) 671
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 682
BanI GGYRCC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 777
Bbv12I GWGCWC 1 cut(s) 682
BbvI GCAGC 2 cut(s) 22, 400
BccI CCATC 2 cut(s) 265, 914
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 843
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 1 cut(s) 671
BcoDI GTCTC 4 cut(s) 122, 419, 563, 929
BfmI CTRYAG 1 cut(s) 971
BfoI RGCGCY 1 cut(s) 226
BfuI GTATCC 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 2 cut(s) 36, 414
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 2 cut(s) 37, 415
Bme1390I CCNGG 2 cut(s) 671, 843
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 3 cut(s) 6, 403, 702
BmiI GGNNCC 2 cut(s) 224, 599
BmrFI CCNGG 2 cut(s) 671, 843
BpiI GAAGAC 1 cut(s) 777
Bpu10I CCTNAGC 2 cut(s) 114, 191
Bpu1102I GCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 671
BsaHI GRCGYC 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 823, 853
Bsc4I CCNNNNNNNGG 3 cut(s) 726, 727, 821
Bse118I RCCGGY 2 cut(s) 8, 219
Bse1I ACTGG 1 cut(s) 911
Bse3DI GCAATG 3 cut(s) 459, 614, 887
BseBI CCWGG 1 cut(s) 843
BseLI CCNNNNNNNGG 3 cut(s) 726, 727, 821
BseMI GCAATG 3 cut(s) 459, 614, 887
BseMII CTCAG 2 cut(s) 450, 924
BseNI ACTGG 1 cut(s) 911
BseRI GAGGAG 1 cut(s) 844
BseSI GKGCMC 1 cut(s) 682
BseXI GCAGC 2 cut(s) 22, 400
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 3 cut(s) 8, 17, 704
BshNI GGYRCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 682
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 4 cut(s) 9, 220, 671, 752
BslI CCNNNNNNNGG 3 cut(s) 726, 727, 821
BsmAI GTCTC 4 cut(s) 122, 419, 563, 929
BsmBI CGTCTC 1 cut(s) 563
BsnI GGCC 3 cut(s) 8, 17, 704
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 4 cut(s) 262, 274, 690, 715
Bsp1720I GCTNAGC 1 cut(s) 459
BspACI CCGC 2 cut(s) 48, 657
BspANI GGCC 3 cut(s) 8, 17, 704
BspCNI CTCAG 2 cut(s) 451, 925
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 224, 599
BspPI GGATC 2 cut(s) 282, 710
BspT107I GGYRCC 1 cut(s) 222
BsrDI GCAATG 3 cut(s) 459, 614, 887
BsrFI RCCGGY 2 cut(s) 8, 219
BsrI ACTGG 1 cut(s) 911
BssAI RCCGGY 2 cut(s) 8, 219
BssMI GATC 4 cut(s) 262, 274, 690, 715
BssNI GRCGYC 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 843
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 223
BstC8I GCNNGC 2 cut(s) 10, 418
BstDEI CTNAG 5 cut(s) 114, 191, 459, 933, 989
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 52, 225
BstKTI GATC 4 cut(s) 265, 277, 693, 718
BstMAI GTCTC 4 cut(s) 122, 419, 563, 929
BstMBI GATC 4 cut(s) 262, 274, 690, 715
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 843
BstSCI CCNGG 2 cut(s) 669, 841
BstSFI CTRYAG 1 cut(s) 971
BstSLI GKGCMC 1 cut(s) 682
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 22, 400
BstV2I GAAGAC 1 cut(s) 777
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 3 cut(s) 8, 17, 704
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 10, 418
CfoI GCGC 2 cut(s) 52, 225
Cfr10I RCCGGY 2 cut(s) 8, 219
Cfr13I GGNCC 3 cut(s) 6, 403, 702
Csp6I GTAC 2 cut(s) 661, 998
CspCI CAANNNNNGTGG 2 cut(s) 153, 188
CviAII CATG 2 cut(s) 370, 748
CviQI GTAC 2 cut(s) 661, 998
DdeI CTNAG 5 cut(s) 114, 191, 459, 933, 989
DinI GGCGCC 1 cut(s) 224
DpnI GATC 4 cut(s) 264, 276, 692, 717
DpnII GATC 4 cut(s) 262, 274, 690, 715
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 841
EcoRV GATATC 1 cut(s) 25
EgeI GGCGCC 1 cut(s) 224
EheI GGCGCC 1 cut(s) 224
Esp3I CGTCTC 1 cut(s) 563
FaeI CATG 2 cut(s) 373, 751
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FatI CATG 2 cut(s) 369, 747
FauI CCCGC 1 cut(s) 650
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 2 cut(s) 36, 414
Fsp4HI GCNGC 2 cut(s) 36, 414
GlaI GCGC 2 cut(s) 51, 224
GluI GCNGC 2 cut(s) 36, 414
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 3 cut(s) 8, 17, 704
HapII CCGG 4 cut(s) 9, 220, 671, 752
HhaI GCGC 2 cut(s) 52, 225
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 2 cut(s) 373, 751
Hin6I GCGC 2 cut(s) 50, 223
HinP1I GCGC 2 cut(s) 50, 223
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 2 cut(s) 542, 924
HpaII CCGG 4 cut(s) 9, 220, 671, 752
Hpy166II GTNNAC 2 cut(s) 175, 680
Hpy188I TCNGA 7 cut(s) 29, 60, 342, 521, 547, 690, 904
Hpy188III TCNNGA 4 cut(s) 241, 291, 380, 401
Hpy8I GTNNAC 2 cut(s) 175, 680
Hpy99I CGWCG 1 cut(s) 932
HpyAV CCTTC 1 cut(s) 970
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 286, 471, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 5 cut(s) 114, 191, 459, 933, 989
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 373, 751
HspAI GCGC 2 cut(s) 50, 223
KasI GGCGCC 1 cut(s) 222
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 4 cut(s) 262, 274, 690, 715
LmnI GCTCC 1 cut(s) 603
Lsp1109I GCAGC 2 cut(s) 22, 400
MaeIII GTNAC 1 cut(s) 867
MalI GATC 4 cut(s) 264, 276, 692, 717
MboI GATC 4 cut(s) 262, 274, 690, 715
MboII GAAGA 7 cut(s) 67, 161, 208, 256, 782, 807, 929
MflI RGATCY 1 cut(s) 715
MhlI GDGCHC 1 cut(s) 682
MluCI AATT 3 cut(s) 739, 780, 810
Mly113I GGCGCC 1 cut(s) 223
MlyI GAGTC 1 cut(s) 933
MmeI TCCRAC 2 cut(s) 309, 570
MroNI GCCGGC 1 cut(s) 8
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 2 cut(s) 894, 965
MslI CAYNNNNRTG 1 cut(s) 445
MspI CCGG 4 cut(s) 9, 220, 671, 752
MspR9I CCNGG 2 cut(s) 671, 843
MvaI CCWGG 1 cut(s) 843
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 14
NaeI GCCGGC 1 cut(s) 10
NarI GGCGCC 1 cut(s) 223
NciI CCSGG 1 cut(s) 671
NdeII GATC 4 cut(s) 262, 274, 690, 715
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 373, 751
NlaIV GGNNCC 2 cut(s) 224, 599
PdiI GCCGGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 1 cut(s) 542
PflMI CCANNNNNTGG 1 cut(s) 821
PfoI TCCNGGA 2 cut(s) 669, 841
PkrI GCNGC 2 cut(s) 37, 415
PleI GAGTC 1 cut(s) 932
PluTI GGCGCC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 932
Psp6I CCWGG 1 cut(s) 841
PspGI CCWGG 1 cut(s) 841
PspN4I GGNNCC 2 cut(s) 224, 599
PspPI GGNCC 3 cut(s) 6, 403, 702
PsuI RGATCY 1 cut(s) 715
RsaI GTAC 2 cut(s) 662, 999
RsaNI GTAC 2 cut(s) 661, 998
RseI CAYNNNNRTG 1 cut(s) 445
SaqAI TTAA 2 cut(s) 894, 965
SatI GCNGC 2 cut(s) 36, 414
Sau3AI GATC 4 cut(s) 262, 274, 690, 715
Sau96I GGNCC 3 cut(s) 6, 403, 702
SchI GAGTC 1 cut(s) 933
ScrFI CCNGG 2 cut(s) 671, 843
SduI GDGCHC 1 cut(s) 682
SfcI CTRYAG 1 cut(s) 971
SfiI GGCCNNNNNGGCC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 224
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 3 cut(s) 739, 780, 810
SsiI CCGC 2 cut(s) 48, 657
SspDI GGCGCC 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 669, 841
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 265
TasI AATT 3 cut(s) 739, 780, 810
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 2 cut(s) 894, 965
Tru9I TTAA 2 cut(s) 894, 965
TscAI CASTG 1 cut(s) 355
TseI GCWGC 2 cut(s) 35, 413
TspDTI ATGAA 3 cut(s) 736, 876, 956
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 821
VneI GTGCAC 1 cut(s) 678
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 739
XmnI GAANNNNTTC 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.