pycom16g09870

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
6716258 .. 6716548
291 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g09870.1

Sequence Viewer

Length: 291 bp
ATGGACTTTTTGAGTTGCATGATATTGTTCCTCGTAATCATCTGGATCTCGGTTCATGCTATCTATTATTCGTTTGCGGGAAGAAGATCAAGTCCCACTAGGCTTCCACCAGGACCAAACCCACTTCCTTTCATTGGCAATCCTTTGAAGCTTGGTAGCATACCCCACATCTCTCTTACTAACCTTTCACAACGCCATGGCCCCAATTTGTCTTTACGACTTGGACATGTTACGACGGTTGTAGTTTCTTCATCAATCGTAGCTAAAGAAGTCCTCCGGACCCGTGATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

10.87

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 95 5.8e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 276
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 151, 263
AluI AGCT 2 cut(s) 151, 263
AlwI GGATC 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 276
AoxI GGCC 1 cut(s) 199
AspS9I GGNCC 3 cut(s) 113, 200, 279
AvaII GGWCC 2 cut(s) 113, 279
BciT130I CCWGG 1 cut(s) 111
BfaI CTAG 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 2 cut(s) 113, 279
BmgT120I GGNCC 3 cut(s) 113, 200, 279
BmiI GGNNCC 2 cut(s) 202, 281
BmrFI CCNGG 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 134
BseAI TCCGGA 1 cut(s) 276
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 134
BshFI GGCC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 201
Bsp13I TCCGGA 1 cut(s) 276
Bsp143I GATC 2 cut(s) 45, 86
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 202, 281
BspPI GGATC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 45, 86
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 238
BstDSI CCRYGG 1 cut(s) 196
BstKTI GATC 2 cut(s) 48, 89
BstMBI GATC 2 cut(s) 45, 86
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 196
Cfr13I GGNCC 3 cut(s) 113, 200, 279
CviAII CATG 4 cut(s) 19, 56, 197, 227
CviJI RGCY 4 cut(s) 103, 151, 201, 263
CviKI_1 RGCY 4 cut(s) 103, 151, 201, 263
DpnI GATC 2 cut(s) 47, 88
DpnII GATC 2 cut(s) 45, 86
Eco130I CCWWGG 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 113, 279
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 4 cut(s) 22, 59, 200, 230
FaiI YATR 5 cut(s) 20, 57, 161, 198, 228
FaqI GGGAC 1 cut(s) 78
FatI CATG 4 cut(s) 18, 55, 196, 226
FauI CCCGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 99
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 277
Hin1II CATG 4 cut(s) 22, 59, 200, 230
HindIII AAGCTT 1 cut(s) 149
HpaII CCGG 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 43, 277
Hpy99I CGWCG 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 18
Hsp92II CATG 4 cut(s) 22, 59, 200, 230
Kpn2I TCCGGA 1 cut(s) 276
Kzo9I GATC 2 cut(s) 45, 86
LpnPI CCDG 3 cut(s) 28, 96, 123
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 47, 88
MboI GATC 2 cut(s) 45, 86
MboII GAAGA 3 cut(s) 93, 96, 240
MflI RGATCY 1 cut(s) 45
MluCI AATT 1 cut(s) 205
MnlI CCTC 2 cut(s) 41, 284
MroI TCCGGA 1 cut(s) 276
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 196
NdeII GATC 2 cut(s) 45, 86
NlaIII CATG 4 cut(s) 22, 59, 200, 230
NlaIV GGNNCC 2 cut(s) 202, 281
NspI RCATGY 1 cut(s) 230
PciI ACATGT 1 cut(s) 226
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 202, 281
PspPI GGNCC 3 cut(s) 113, 200, 279
PsuI RGATCY 1 cut(s) 45
Sau3AI GATC 2 cut(s) 45, 86
Sau96I GGNCC 3 cut(s) 113, 200, 279
ScrFI CCNGG 1 cut(s) 111
SetI ASST 3 cut(s) 153, 186, 265
SinI GGWCC 2 cut(s) 113, 279
Sse9I AATT 1 cut(s) 205
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 238
TasI AATT 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 44, 121, 240
VpaK11BI GGWCC 2 cut(s) 113, 279
XceI RCATGY 1 cut(s) 230
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.