Rorug01G0177500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000168
Physical Location & Seq
Reverse (-)
24343653 .. 24344597
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0177500.1

Sequence Viewer

Length: 567 bp
ATGAAAGTCGTCCAGTGCAGCAATAGGTTAATGTTGGGCTTACTGAGGTACATTACATTCGTTGAGATTCAAATCATCAAGATTCAAATCACCACCGCTGCGTCTCAATCCAGAGAAGAAGAGGGACCAACCGACCGACACACCTCGAGCAATGAACCCCAAGAGGGCCCCACAATGGACACCGGAGCGGCGAGAGTGGGTCTGGCCGCGTCGTCGTCGTCGGCGGAGGACCCGTCGTCTCGGGGGATCGCCGCTCGACGCTGTCCAGGCGTGGAGCTTCGGCGTGTCGCGCCGATACCAGCACCGGCTCGACAAAACTACGCCGCACGTCCTCCACCGCTGGCTCGCAACCCTCGGTGTGGCCTTGGTCTACGTCCTCCGCGTCTACTTCGTCCAGGGATTCTACATCATGTCATACGGCTTGGGGATCTACCTCCTGAACTTGCTCATCGACTTTCTCTCTCCTCATGTCGACCCGGAGATCCACGACCTTTCCGACGGCCCCAGCCTCCCGACTCGCGGATCCGACGAGTTCCGCCCCTTCGTTCGACGCCTCCCCGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

188

Amino Acids

20.65

Weight (kDa)

11.45

Isoelectric Point (pI)

75.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 188, 254
AccI GTMKAC 3 cut(s) 370, 385, 472
AccII CGCG 4 cut(s) 209, 290, 382, 520
AclWI GGATC 5 cut(s) 254, 435, 476, 517, 530
AcoI YGGCCR 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 551
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 4 cut(s) 164, 175, 359, 519
AgsI TTSAA 2 cut(s) 71, 86
AhdI GACNNNNNGTC 1 cut(s) 235
AjiI CACGTC 1 cut(s) 329
AjnI CCWGG 2 cut(s) 265, 394
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 108, 243
AlwI GGATC 5 cut(s) 254, 435, 476, 517, 530
Ama87I CYCGRG 3 cut(s) 145, 240, 558
AoxI GGCC 4 cut(s) 166, 204, 361, 500
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 18, 98
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 5 cut(s) 125, 166, 167, 229, 501
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 1 cut(s) 82
AvaI CYCGRG 3 cut(s) 145, 240, 558
AvaII GGWCC 2 cut(s) 125, 229
BaeGI GKGCMC 1 cut(s) 170
BamHI GGATCC 1 cut(s) 522
BanII GRGCYC 1 cut(s) 170
BbvI GCAGC 2 cut(s) 30, 85
BceAI ACGGC 2 cut(s) 434, 515
BciT130I CCWGG 2 cut(s) 267, 396
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 108, 243
BisI GCNGC 6 cut(s) 19, 99, 189, 207, 252, 324
BlsI GCNGC 6 cut(s) 20, 100, 190, 208, 253, 325
Bme1390I CCNGG 3 cut(s) 267, 396, 477
Bme18I GGWCC 2 cut(s) 125, 229
BmeRI GACNNNNNGTC 1 cut(s) 235
BmeT110I CYCGRG 3 cut(s) 145, 240, 558
BmgBI CACGTC 1 cut(s) 329
BmgT120I GGNCC 5 cut(s) 125, 166, 167, 229, 501
BmiI GGNNCC 6 cut(s) 126, 168, 169, 231, 503, 524
BmrFI CCNGG 3 cut(s) 267, 396, 477
BpuMI CCSGG 1 cut(s) 477
BsaBI GATNNNNATC 2 cut(s) 71, 86
BsaHI GRCGYC 1 cut(s) 551
BsaJI CCNNGG 3 cut(s) 353, 364, 395
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 4 cut(s) 164, 175, 359, 519
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 157
Bse8I GATNNNNATC 2 cut(s) 71, 86
BseBI CCWGG 2 cut(s) 267, 396
BseDI CCNNGG 3 cut(s) 353, 364, 395
BseJI GATNNNNATC 2 cut(s) 71, 86
BseLI CCNNNNNNNGG 4 cut(s) 164, 175, 359, 519
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 454
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 2 cut(s) 30, 85
BseYI CCCAGC 1 cut(s) 504
BsgI GTGCAG 1 cut(s) 37
Bsh1236I CGCG 4 cut(s) 209, 290, 382, 520
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 4 cut(s) 168, 206, 363, 502
BsiEI CGRYCG 1 cut(s) 136
BsiHKCI CYCGRG 3 cut(s) 145, 240, 558
BsiSI CCGG 3 cut(s) 183, 305, 477
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 4 cut(s) 164, 175, 359, 519
BsmAI GTCTC 2 cut(s) 108, 243
BsmBI CGTCTC 2 cut(s) 108, 243
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 4 cut(s) 168, 206, 363, 502
BsoBI CYCGRG 3 cut(s) 145, 240, 558
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 4 cut(s) 246, 427, 481, 522
BspANI GGCC 4 cut(s) 168, 206, 363, 502
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 4 cut(s) 209, 290, 382, 520
BspLI GGNNCC 6 cut(s) 126, 168, 169, 231, 503, 524
BspPI GGATC 5 cut(s) 254, 435, 476, 517, 530
BsrBI CCGCTC 2 cut(s) 188, 254
BsrDI GCAATG 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 304
BsrI ACTGG 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 353, 364, 395
BssMI GATC 4 cut(s) 246, 427, 481, 522
BssNI GRCGYC 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 364
Bst2UI CCWGG 2 cut(s) 267, 396
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 551
BstC8I GCNNGC 2 cut(s) 342, 346
BstDEI CTNAG 1 cut(s) 44
BstFNI CGCG 4 cut(s) 209, 290, 382, 520
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 4 cut(s) 249, 430, 484, 525
BstMAI GTCTC 2 cut(s) 108, 243
BstMBI GATC 4 cut(s) 246, 427, 481, 522
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 267, 289
BstNI CCWGG 2 cut(s) 267, 396
BstSCI CCNGG 3 cut(s) 265, 394, 475
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 4 cut(s) 209, 290, 382, 520
BstV1I GCAGC 2 cut(s) 30, 85
BstX2I RGATCY 3 cut(s) 427, 481, 522
BstYI RGATCY 3 cut(s) 427, 481, 522
BsuRI GGCC 4 cut(s) 168, 206, 363, 502
BtrI CACGTC 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 2 cut(s) 342, 346
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 5 cut(s) 125, 166, 167, 229, 501
CseI GACGC 5 cut(s) 90, 198, 267, 371, 559
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 410, 468
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 44
DpnI GATC 4 cut(s) 248, 429, 483, 524
DpnII GATC 4 cut(s) 246, 427, 481, 522
DriI GACNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 114
Eam1105I GACNNNNNGTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 2 cut(s) 239, 525
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 125, 229
Eco88I CYCGRG 3 cut(s) 145, 240, 558
EcoO109I RGGNCCY 3 cut(s) 166, 167, 229
EcoRII CCWGG 2 cut(s) 265, 394
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 364
Esp3I CGTCTC 2 cut(s) 108, 243
FaeI CATG 2 cut(s) 413, 471
FaiI YATR 3 cut(s) 411, 416, 469
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 409, 467
FblI GTMKAC 3 cut(s) 370, 385, 472
Fnu4HI GCNGC 6 cut(s) 19, 99, 189, 207, 252, 324
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 6 cut(s) 19, 99, 189, 207, 252, 324
GlaI GCGC 1 cut(s) 291
GluI GCNGC 6 cut(s) 19, 99, 189, 207, 252, 324
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 4 cut(s) 168, 206, 363, 502
HapII CCGG 3 cut(s) 183, 305, 477
HgaI GACGC 5 cut(s) 90, 198, 267, 371, 559
HhaI GCGC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 2 cut(s) 413, 471
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 473
HindII GTYRAC 1 cut(s) 473
HinfI GANTC 4 cut(s) 67, 82, 400, 515
HpaII CCGG 3 cut(s) 183, 305, 477
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 3 cut(s) 371, 386, 473
Hpy188I TCNGA 2 cut(s) 497, 527
Hpy188III TCNNGA 4 cut(s) 79, 111, 437, 512
Hpy8I GTNNAC 3 cut(s) 371, 386, 473
Hpy99I CGWCG 9 cut(s) 214, 217, 220, 223, 238, 261, 501, 531, 553
HpyAV CCTTC 1 cut(s) 551
HpyCH4IV ACGT 2 cut(s) 328, 373
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 289
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 2 cut(s) 328, 373
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 2 cut(s) 413, 471
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 4 cut(s) 246, 427, 481, 522
LmnI GCTCC 2 cut(s) 185, 274
Lsp1109I GCAGC 2 cut(s) 30, 85
MaeII ACGT 2 cut(s) 328, 373
MalI GATC 4 cut(s) 248, 429, 483, 524
MbiI CCGCTC 2 cut(s) 188, 254
MboI GATC 4 cut(s) 246, 427, 481, 522
MboII GAAGA 2 cut(s) 128, 131
MflI RGATCY 3 cut(s) 427, 481, 522
MhlI GDGCHC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 509
MmeI TCCRAC 2 cut(s) 520, 550
MseI TTAA 2 cut(s) 29, 565
MspA1I CMGCKG 2 cut(s) 98, 340
MspI CCGG 3 cut(s) 183, 305, 477
MspR9I CCNGG 3 cut(s) 267, 396, 477
MvaI CCWGG 2 cut(s) 267, 396
MvnI CGCG 4 cut(s) 209, 290, 382, 520
MwoI GCNNNNNNNGC 2 cut(s) 267, 289
NciI CCSGG 1 cut(s) 477
NdeII GATC 4 cut(s) 246, 427, 481, 522
NlaIII CATG 2 cut(s) 413, 471
NlaIV GGNNCC 6 cut(s) 126, 168, 169, 231, 503, 524
PaeR7I CTCGAG 1 cut(s) 145
PcsI WCGNNNNNNNCGW 2 cut(s) 379, 493
PfeI GAWTC 3 cut(s) 67, 82, 400
PflFI GACNNNGTC 1 cut(s) 261
PkrI GCNGC 6 cut(s) 20, 100, 190, 208, 253, 325
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 265, 394
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 2 cut(s) 265, 394
PspN4I GGNNCC 6 cut(s) 126, 168, 169, 231, 503, 524
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 5 cut(s) 125, 166, 167, 229, 501
PspPPI RGGWCCY 1 cut(s) 229
PspXI VCTCGAGB 1 cut(s) 145
PsuI RGATCY 3 cut(s) 427, 481, 522
PsyI GACNNNGTC 1 cut(s) 261
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SalI GTCGAC 1 cut(s) 471
SaqAI TTAA 2 cut(s) 29, 565
SatI GCNGC 6 cut(s) 19, 99, 189, 207, 252, 324
Sau3AI GATC 4 cut(s) 246, 427, 481, 522
Sau96I GGNCC 5 cut(s) 125, 166, 167, 229, 501
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 3 cut(s) 267, 396, 477
SduI GDGCHC 1 cut(s) 170
SetI ASST 8 cut(s) 29, 50, 146, 279, 331, 376, 436, 493
Sfr274I CTCGAG 1 cut(s) 145
SinI GGWCC 2 cut(s) 125, 229
SlaI CTCGAG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
StyD4I CCNGG 3 cut(s) 265, 394, 475
StyI CCWWGG 1 cut(s) 364
TaiI ACGT 2 cut(s) 331, 376
TaqI TCGA 6 cut(s) 146, 256, 310, 451, 472, 548
TaqII GACCGA 1 cut(s) 150
TauI GCSGC 4 cut(s) 191, 209, 254, 326
TfiI GAWTC 3 cut(s) 67, 82, 400
Tru1I TTAA 2 cut(s) 29, 565
Tru9I TTAA 2 cut(s) 29, 565
TscAI CASTG 1 cut(s) 20
TseI GCWGC 2 cut(s) 18, 98
TspDTI ATGAA 2 cut(s) 17, 168
TspRI CASTG 1 cut(s) 20
Tth111I GACNNNGTC 1 cut(s) 261
VpaK11BI GGWCC 2 cut(s) 125, 229
XhoI CTCGAG 1 cut(s) 145
XmiI GTMKAC 3 cut(s) 370, 385, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.