Rmu_sc0002620.1_g000015

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002620.1
OG0000168
Physical Location & Seq
Reverse (-)
64969 .. 65397
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002620.1_g000015.1.cds

Sequence Viewer

Length: 429 bp
atggattttttcttgagttgcattctcttgtctctttgctttgctgcctcctggttcttaatccaagccctccagggaagaacccgagttaggcttccaccagggccaaagccatttccattggttggaaatctgtttgagcttggagacaaacctcatctctctttgaccaagctctcacaacgctatggccccataatcagtttgcaactcgggcaagtaacgactgttgcagcttcttcatcagccatggccaaagaaatcctccgaaaccatgaccaattcccttgcaaccgaacagtcccggatgcaccacgagcctttaaagactacagcttgccttggcttccagtatcaccgaggtggaggaacattcgcaaaatatgcaactcccaattgtttgccactaaagttcttgatgccaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

9.96

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 90, 125
AjnI CCWGG 3 cut(s) 50, 72, 100
AleI CACNNNNGTG 1 cut(s) 361
AluBI AGCT 4 cut(s) 142, 175, 236, 336
AluI AGCT 4 cut(s) 142, 175, 236, 336
Alw26I GTCTC 2 cut(s) 36, 141
Ama87I CYCGRG 2 cut(s) 84, 212
AoxI GGCC 3 cut(s) 104, 190, 252
ApeKI GCWGC 2 cut(s) 44, 233
AspS9I GGNCC 2 cut(s) 104, 191
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 348
AvaI CYCGRG 2 cut(s) 84, 212
BalI TGGCCA 1 cut(s) 254
BauI CACGAG 1 cut(s) 315
BbvI GCAGC 2 cut(s) 31, 245
BciT130I CCWGG 3 cut(s) 52, 74, 102
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 36, 141
BfmI CTRYAG 1 cut(s) 331
BisI GCNGC 2 cut(s) 45, 234
BlsI GCNGC 2 cut(s) 46, 235
Bme1390I CCNGG 4 cut(s) 52, 74, 102, 305
BmeT110I CYCGRG 2 cut(s) 84, 212
BmgT120I GGNCC 2 cut(s) 104, 191
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 4 cut(s) 52, 74, 102, 305
BmsI GCATC 2 cut(s) 298, 409
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 305
BsaJI CCNNGG 5 cut(s) 73, 101, 249, 341, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 125
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 3 cut(s) 52, 74, 102
BseDI CCNNGG 5 cut(s) 73, 101, 249, 341, 359
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 90, 125
BseNI ACTGG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 31, 245
BshFI GGCC 3 cut(s) 106, 192, 254
BsiHKCI CYCGRG 2 cut(s) 84, 212
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 90, 125
BsmAI GTCTC 2 cut(s) 36, 141
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 1 cut(s) 21
BsnI GGCC 3 cut(s) 106, 192, 254
BsoBI CYCGRG 2 cut(s) 84, 212
Bsp19I CCATGG 1 cut(s) 249
BspANI GGCC 3 cut(s) 106, 192, 254
BspLI GGNNCC 1 cut(s) 193
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 5 cut(s) 73, 101, 249, 341, 359
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 249, 341
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 3 cut(s) 52, 74, 102
Bst4CI ACNGT 2 cut(s) 229, 301
BstAPI GCANNNNNTGC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 338
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 36, 141
BstMWI GCNNNNNNNGC 3 cut(s) 214, 317, 384
BstNI CCWGG 3 cut(s) 52, 74, 102
BstSCI CCNGG 4 cut(s) 50, 72, 100, 303
BstSFI CTRYAG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 31, 245
BsuRI GGCC 3 cut(s) 106, 192, 254
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 104, 191
CviAII CATG 2 cut(s) 250, 275
DraI TTTAAA 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 249, 341
Eco88I CYCGRG 2 cut(s) 84, 212
EcoRII CCWGG 3 cut(s) 50, 72, 100
EcoT14I CCWWGG 2 cut(s) 249, 341
ErhI CCWWGG 2 cut(s) 249, 341
FaeI CATG 2 cut(s) 253, 278
FaiI YATR 5 cut(s) 189, 197, 251, 276, 385
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 249, 274
Fnu4HI GCNGC 2 cut(s) 45, 234
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 45, 234
GluI GCNGC 2 cut(s) 45, 234
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 3 cut(s) 106, 192, 254
HapII CCGG 1 cut(s) 305
Hin1II CATG 2 cut(s) 253, 278
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 348
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 2 cut(s) 13, 416
HpyCH4III ACNGT 2 cut(s) 229, 301
HpyCH4V TGCA 6 cut(s) 21, 208, 233, 291, 311, 387
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 317, 384
Hsp92II CATG 2 cut(s) 253, 278
LpnPI CCDG 8 cut(s) 37, 59, 64, 86, 87, 114, 318, 363
Lsp1109I GCAGC 2 cut(s) 31, 245
LweI GCATC 2 cut(s) 298, 409
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 2 cut(s) 90, 231
MfeI CAATTG 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 2 cut(s) 281, 395
MluNI TGGCCA 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 6 cut(s) 58, 80, 165, 275, 354, 360
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 2 cut(s) 59, 324
MslI CAYNNNNRTG 1 cut(s) 361
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 4 cut(s) 52, 74, 102, 305
MunI CAATTG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 21
MvaI CCWGG 3 cut(s) 52, 74, 102
MwoI GCNNNNNNNGC 3 cut(s) 214, 317, 384
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 249
NlaIII CATG 2 cut(s) 253, 278
NlaIV GGNNCC 1 cut(s) 193
OliI CACNNNNGTG 1 cut(s) 361
PctI GAATGC 1 cut(s) 21
PflMI CCANNNNNTGG 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 2 cut(s) 46, 235
Psp6I CCWGG 3 cut(s) 50, 72, 100
PspGI CCWGG 3 cut(s) 50, 72, 100
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 104, 191
RseI CAYNNNNRTG 1 cut(s) 361
SaqAI TTAA 2 cut(s) 59, 324
SatI GCNGC 2 cut(s) 45, 234
Sau96I GGNCC 2 cut(s) 104, 191
ScrFI CCNGG 4 cut(s) 52, 74, 102, 305
SetI ASST 6 cut(s) 144, 157, 177, 238, 338, 365
SfaNI GCATC 2 cut(s) 298, 409
SfcI CTRYAG 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 2 cut(s) 281, 395
StyD4I CCNGG 4 cut(s) 50, 72, 100, 303
StyI CCWWGG 2 cut(s) 249, 341
TaaI ACNGT 2 cut(s) 229, 301
TasI AATT 2 cut(s) 281, 395
Tru1I TTAA 2 cut(s) 59, 324
Tru9I TTAA 2 cut(s) 59, 324
TseI GCWGC 2 cut(s) 44, 233
TspDTI ATGAA 1 cut(s) 231
Van91I CCANNNNNTGG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.