Rroxscaffold_5G00372510

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000168
Physical Location & Seq
Reverse (-)
53955430 .. 53956380
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00372510.1

Sequence Viewer

Length: 294 bp
ATGGATTTCGTATTCGCCATAATCTTGTGTCTTGCCTTTGCCTGGATCTCCATCCAAGCATTCCATTCTTTTGCAGGAAGGAAAGCCATACCCGGAAAGCTTCTTCCACCGGGACCAAAGCCATTTCCACTGATTGGGAATCTGTTTGAGCTTGGAGACAAACCCCATGTCTCCTTCACTAAGCTATCTCAACGCTACGGCCCCATAATCAGTTTGCAACTAGGGCAGGTGACCACAGTTGTAGTTTCCTCGTCAACTCTGGCCAAAGAAATCCTCCGAACTCATGAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

97

Amino Acids

10.61

Weight (kDa)

9.65

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 95 9.2e-14 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 134
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 42, 134
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 3 cut(s) 100, 151, 184
AluI AGCT 3 cut(s) 100, 151, 184
Alw26I GTCTC 2 cut(s) 150, 175
AlwI GGATC 1 cut(s) 53
AoxI GGCC 2 cut(s) 199, 261
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspS9I GGNCC 2 cut(s) 113, 200
AsuC2I CCSGG 2 cut(s) 93, 111
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 263
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 43
BcnI CCSGG 2 cut(s) 93, 111
BcoDI GTCTC 2 cut(s) 150, 175
BfaI CTAG 1 cut(s) 221
BfuAI ACCTGC 1 cut(s) 217
Bme1390I CCNGG 3 cut(s) 43, 93, 111
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 113, 200
BmiI GGNNCC 2 cut(s) 114, 202
BmrFI CCNGG 3 cut(s) 43, 93, 111
BpuMI CCSGG 2 cut(s) 93, 111
BsaBI GATNNNNATC 1 cut(s) 50
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 134
Bse8I GATNNNNATC 1 cut(s) 50
BseBI CCWGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 51
BseJI GATNNNNATC 1 cut(s) 50
BseLI CCNNNNNNNGG 2 cut(s) 42, 134
BshFI GGCC 2 cut(s) 201, 263
BsiSI CCGG 2 cut(s) 93, 110
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 42, 134
BsmAI GTCTC 2 cut(s) 150, 175
BsmFI GGGAC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 2 cut(s) 201, 263
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 2 cut(s) 201, 263
BspHI TCATGA 2 cut(s) 283, 290
BspLI GGNNCC 2 cut(s) 114, 202
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 1 cut(s) 53
BssMI GATC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 180
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 2 cut(s) 150, 175
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 1 cut(s) 43
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 3 cut(s) 41, 91, 109
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 2 cut(s) 201, 263
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 128
BveI ACCTGC 1 cut(s) 217
CciI TCATGA 2 cut(s) 283, 290
Cfr13I GGNCC 2 cut(s) 113, 200
CviAII CATG 3 cut(s) 167, 284, 291
CviJI RGCY 7 cut(s) 86, 100, 121, 151, 184, 201, 263
CviKI_1 RGCY 7 cut(s) 86, 100, 121, 151, 184, 201, 263
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 41
FaeI CATG 3 cut(s) 170, 287, 294
FaiI YATR 6 cut(s) 20, 89, 168, 206, 285, 292
FaqI GGGAC 1 cut(s) 126
FatI CATG 3 cut(s) 166, 283, 290
FokI GGATG 1 cut(s) 38
FspBI CTAG 1 cut(s) 221
HaeIII GGCC 2 cut(s) 201, 263
HapII CCGG 2 cut(s) 93, 110
Hin1II CATG 3 cut(s) 170, 287, 294
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 139, 287
HpaII CCGG 2 cut(s) 93, 110
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 2 cut(s) 284, 291
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 2 cut(s) 72, 184
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 74, 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 3 cut(s) 170, 287, 294
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 7 cut(s) 28, 55, 60, 106, 123, 212, 245
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 95
MflI RGATCY 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 263
MluNI TGGCCA 1 cut(s) 263
MnlI CCTC 2 cut(s) 259, 284
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 263
MspI CCGG 2 cut(s) 93, 110
MspR9I CCNGG 3 cut(s) 43, 93, 111
Mva1269I GAATGC 1 cut(s) 59
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 223
NciI CCSGG 2 cut(s) 93, 111
NdeII GATC 1 cut(s) 45
NlaIII CATG 3 cut(s) 170, 287, 294
NlaIV GGNNCC 2 cut(s) 114, 202
NmuCI GTSAC 1 cut(s) 229
PagI TCATGA 2 cut(s) 283, 290
PaqCI CACCTGC 1 cut(s) 217
PctI GAATGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 139
PflMI CCANNNNNTGG 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 41
PspEI GGTNACC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 114, 202
PspPI GGNCC 2 cut(s) 113, 200
PsuI RGATCY 1 cut(s) 45
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 2 cut(s) 113, 200
ScrFI CCNGG 3 cut(s) 43, 93, 111
SetI ASST 4 cut(s) 102, 153, 186, 231
SinI GGWCC 1 cut(s) 113
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 3 cut(s) 41, 91, 109
TaaI ACNGT 1 cut(s) 238
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 135
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 113
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.