RchiOBHm_Chr4g0431651

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
55848420 .. 55849083
664 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40029

Sequence Viewer

Length: 312 bp
ATGATAGAGATCTTTGATCGAATGATCCATCAAAGGCTGGAATCAAGAAAAGGGGACAGTTATATCACAGCCAATGATATGTTGGATACACTTTTGAACATCAGTAAAGAGAAAATGGAGGACATGGACATGCTCAAAACACAACATTTGTTCCTGGATTTATTTGCTGAAGACACGGACACAAGTTCAGCCACATTGAAATGGGCAATGGCCGAGCTACTACGCAACCCAAAAATTCTTTCAGAAGCTCAAGCGGAACTCCAGCAAGTGATTGGAAAGGGGAAAGTAGTTGAGGAATCGGACATTGCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.8

Weight (kDa)

4.63

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 102 1.4e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 19
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 189
AgsI TTSAA 2 cut(s) 97, 199
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 2 cut(s) 223, 255
AluBI AGCT 2 cut(s) 217, 248
AluI AGCT 2 cut(s) 217, 248
AlwI GGATC 1 cut(s) 19
AoxI GGCC 1 cut(s) 210
ApoI RAATTY 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 177
BccI CCATC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 1 cut(s) 79
BfuI GTATCC 1 cut(s) 79
BglII AGATCT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 8
Bse3DI GCAATG 2 cut(s) 213, 303
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 155
BseJI GATNNNNATC 1 cut(s) 8
BseMI GCAATG 2 cut(s) 213, 303
BshFI GGCC 1 cut(s) 212
BslFI GGGAC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 212
Bsp143I GATC 3 cut(s) 9, 16, 24
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 212
BspPI GGATC 1 cut(s) 19
BsrDI GCAATG 2 cut(s) 213, 303
BssMI GATC 3 cut(s) 9, 16, 24
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 59
BstKTI GATC 3 cut(s) 12, 19, 27
BstMBI GATC 3 cut(s) 9, 16, 24
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 212
CviAII CATG 2 cut(s) 124, 130
CviJI RGCY 6 cut(s) 37, 71, 191, 212, 217, 248
CviKI_1 RGCY 6 cut(s) 37, 71, 191, 212, 217, 248
DpnI GATC 3 cut(s) 11, 18, 26
DpnII GATC 3 cut(s) 9, 16, 24
EaeI YGGCCR 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 153
FaeI CATG 2 cut(s) 127, 133
FaiI YATR 4 cut(s) 63, 80, 125, 131
FaqI GGGAC 1 cut(s) 68
FatI CATG 2 cut(s) 123, 129
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 2 cut(s) 127, 133
HinfI GANTC 2 cut(s) 41, 296
Hpy188I TCNGA 2 cut(s) 244, 301
Hpy188III TCNNGA 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 59
Hsp92II CATG 2 cut(s) 127, 133
Kzo9I GATC 3 cut(s) 9, 16, 24
LpnPI CCDG 4 cut(s) 23, 140, 167, 275
MalI GATC 3 cut(s) 11, 18, 26
MboI GATC 3 cut(s) 9, 16, 24
MboII GAAGA 1 cut(s) 182
MflI RGATCY 1 cut(s) 9
MluCI AATT 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 112, 286
MslI CAYNNNNRTG 2 cut(s) 128, 199
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
NdeII GATC 3 cut(s) 9, 16, 24
NlaIII CATG 2 cut(s) 127, 133
NmeAIII GCCGAG 1 cut(s) 238
NspI RCATGY 1 cut(s) 133
PfeI GAWTC 2 cut(s) 41, 296
PfoI TCCNGGA 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PsuI RGATCY 1 cut(s) 9
RseI CAYNNNNRTG 2 cut(s) 128, 199
Sau3AI GATC 3 cut(s) 9, 16, 24
ScrFI CCNGG 1 cut(s) 155
SetI ASST 2 cut(s) 219, 250
SmiMI CAYNNNNRTG 2 cut(s) 128, 199
SmlI CTYRAG 1 cut(s) 249
SmoI CTYRAG 1 cut(s) 249
Sse9I AATT 1 cut(s) 234
SsiI CCGC 1 cut(s) 254
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 234
TfiI GAWTC 2 cut(s) 41, 296
TspGWI ACGGA 1 cut(s) 191
XapI RAATTY 1 cut(s) 234
XceI RCATGY 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 2 cut(s) 79, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.