Prupe.6G237700_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000168
Physical Location & Seq
Forward (+)
23782125 .. 23783042
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G237700.1

Sequence Viewer

Length: 318 bp
ATGTGCCTTCTCCCTCAATCCTCTGCTCCTATTTCTTACAATTTAGCTGTGCAACAAGTCGGCTCCACCATTGTAATTTGTCTTAGAGCTCAACGAGTGCCGCAACCTTGGCCATCGAAGTCGGAGAATTCATATCTGAACGAAGCCACTGTCATTGTCATCTCTCCGACGCCAACTAGTTGTCTTTCAGCACTGCTGTCATTTGGTTGTACAGGGAGGGAAGAGGAAGAAGAAGAAGAAGAAAAAGGGAAACGAAAACTCCACTATGTAAAAAGTCGCATTTACCCTTCCGATTCTCCTCACATGCAGTTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

106

Amino Acids

11.71

Weight (kDa)

6.09

Isoelectric Point (pI)

81.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 1 cut(s) 211
AhlI ACTAGT 1 cut(s) 176
AluBI AGCT 2 cut(s) 47, 89
AluI AGCT 2 cut(s) 47, 89
Alw21I GWGCWC 1 cut(s) 91
AoxI GGCC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 127
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
BalI TGGCCA 1 cut(s) 112
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 1 cut(s) 121
BcuI ACTAGT 1 cut(s) 176
BfaI CTAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
BseDI CCNNGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 91
BsnI GGCC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 91
Bsp1407I TGTACA 1 cut(s) 209
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 107
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 307
BsuRI GGCC 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 147, 191
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 210
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 2 cut(s) 304, 315
CviJI RGCY 5 cut(s) 47, 63, 89, 112, 146
CviKI_1 RGCY 5 cut(s) 47, 63, 89, 112, 146
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 307, 318
FaiI YATR 4 cut(s) 133, 267, 305, 316
FatI CATG 2 cut(s) 303, 314
Fnu4HI GCNGC 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 1 cut(s) 177
GluI GCNGC 1 cut(s) 101
HaeIII GGCC 1 cut(s) 112
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 2 cut(s) 307, 318
HinfI GANTC 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 4 cut(s) 124, 138, 168, 292
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 2 cut(s) 17, 297
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 52, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 1 cut(s) 83
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 2 cut(s) 307, 318
LmnI GCTCC 2 cut(s) 31, 68
LpnPI CCDG 1 cut(s) 198
MaeI CTAG 1 cut(s) 177
MboII GAAGA 6 cut(s) 233, 239, 242, 245, 248, 251
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 3 cut(s) 40, 75, 127
MluNI TGGCCA 1 cut(s) 112
MmeI TCCRAC 2 cut(s) 102, 191
MnlI CCTC 5 cut(s) 24, 31, 210, 217, 309
Mox20I TGGCCA 1 cut(s) 112
MscI TGGCCA 1 cut(s) 112
Msp20I TGGCCA 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 109
NlaIII CATG 2 cut(s) 307, 318
NlaIV GGNNCC 1 cut(s) 64
NspI RCATGY 1 cut(s) 307
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 64
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SacI GAGCTC 1 cut(s) 91
SatI GCNGC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 91
SetI ASST 3 cut(s) 49, 91, 109
SgeI CNNG 5 cut(s) 68, 107, 120, 189, 225
SpeI ACTAGT 1 cut(s) 176
Sse9I AATT 3 cut(s) 40, 75, 127
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 177
SstI GAGCTC 1 cut(s) 91
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 116
TasI AATT 3 cut(s) 40, 75, 127
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 1 cut(s) 293
TscAI CASTG 2 cut(s) 154, 198
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 2 cut(s) 154, 198
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 307
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.