RLG00000006893

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
11573845 .. 11578886
5042 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006893

Sequence Viewer

Length: 507 bp
ATGGAATGGGCAATGGCTAAGCTACTCCGCAGTCCAGAGAAACTTGCAAAAGCTCAAGTAGAGCTAGACCAAATAATTGGGAAAGGAAAACCAATTGAGGAATCAGACATTGCTCAACTCCCTTACTTGCAAGCAATAATCAAAGAAACATTCCGATTGCACCCAACAGTACCATTGCTACTTCCCCGTAAAGCCGATTCAGAAGTTGAGGAGTTGTATTCATTGGACATTGATTCTCTGAACAATCTGAGGCCTGAGAGGTTTTTGGGGTCCGAAATTGATGTTATGGGAAGAAACTTCGAGCTTATTCCATTTGGCGGTGGGAGGAGAATATGTCCAAGTTTGCCATTAGCGATGAGAATGTTGCACTTGATGTTGGGTTCAGTCCTGAACTGTTTTGATTGGAAGCTTGAAGATGGAGTTGTACCTGAGACTGTTAACATGGAAGACAAGTTTAGCCTCAGTTTACATATGGCTCATTCTCTGAGGGCTATGCCCAACTCGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

169

Amino Acids

19.03

Weight (kDa)

5.41

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 70 3.2e-19 Cytochrome P450
p450 PF00067 84 - 152 5e-12 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 28, 318
AfaI GTAC 2 cut(s) 171, 426
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 1 cut(s) 413
AluBI AGCT 5 cut(s) 22, 53, 64, 304, 409
AluI AGCT 5 cut(s) 22, 53, 64, 304, 409
Alw26I GTCTC 1 cut(s) 425
AoxI GGCC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 270
AvaII GGWCC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 453
BccI CCATC 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 453
Bpu1102I GCTNAGC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse3DI GCAATG 3 cut(s) 18, 108, 173
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 3 cut(s) 18, 108, 173
BseMII CTCAG 5 cut(s) 239, 246, 420, 475, 476
BseRI GAGGAG 2 cut(s) 224, 340
BshFI GGCC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 425
BsnI GGCC 1 cut(s) 253
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 2 cut(s) 28, 318
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 5 cut(s) 240, 247, 421, 474, 477
BspLI GGNNCC 1 cut(s) 271
BsrDI GCAATG 3 cut(s) 18, 108, 173
Bst4CI ACNGT 3 cut(s) 169, 395, 436
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 6 cut(s) 18, 248, 255, 429, 461, 485
BstMAI GTCTC 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 453
BstXI CCANNNNNNTGG 1 cut(s) 77
BsuRI GGCC 1 cut(s) 253
BtgZI GCGATG 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 170, 425
CviAII CATG 1 cut(s) 442
CviQI GTAC 2 cut(s) 170, 425
DdeI CTNAG 6 cut(s) 18, 248, 255, 429, 461, 485
Eco147I AGGCCT 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 270
FaeI CATG 1 cut(s) 445
FaiI YATR 6 cut(s) 287, 334, 443, 471, 473, 494
FatI CATG 1 cut(s) 441
FauNDI CATATG 1 cut(s) 471
FspBI CTAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 253
Hin1II CATG 1 cut(s) 445
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 3 cut(s) 101, 197, 233
HpaI GTTAAC 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 439, 467
Hpy188I TCNGA 7 cut(s) 106, 155, 202, 240, 249, 274, 486
Hpy188III TCNNGA 2 cut(s) 35, 388
Hpy8I GTNNAC 2 cut(s) 439, 467
HpyCH4III ACNGT 3 cut(s) 169, 395, 436
HpyCH4V TGCA 4 cut(s) 47, 130, 160, 367
HpyF3I CTNAG 6 cut(s) 18, 248, 255, 429, 461, 485
Hsp92II CATG 1 cut(s) 445
KspAI GTTAAC 1 cut(s) 439
LpnPI CCDG 4 cut(s) 48, 267, 401, 441
MaeI CTAG 1 cut(s) 65
MboII GAAGA 3 cut(s) 303, 425, 458
MfeI CAATTG 1 cut(s) 93
MluCI AATT 3 cut(s) 75, 93, 276
MnlI CCTC 7 cut(s) 91, 202, 243, 252, 318, 470, 480
MseI TTAA 1 cut(s) 438
MunI CAATTG 1 cut(s) 93
NdeI CATATG 1 cut(s) 471
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 253
PfeI GAWTC 3 cut(s) 101, 197, 233
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 270
RsaI GTAC 2 cut(s) 171, 426
RsaNI GTAC 2 cut(s) 170, 425
SaqAI TTAA 1 cut(s) 438
Sau96I GGNCC 1 cut(s) 270
SetI ASST 7 cut(s) 24, 55, 66, 263, 306, 411, 430
SinI GGWCC 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 3 cut(s) 75, 93, 276
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 2 cut(s) 28, 318
SspMI CTAG 1 cut(s) 65
StuI AGGCCT 1 cut(s) 253
TaaI ACNGT 3 cut(s) 169, 395, 436
TaqI TCGA 1 cut(s) 300
TasI AATT 3 cut(s) 75, 93, 276
TfiI GAWTC 3 cut(s) 101, 197, 233
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TspDTI ATGAA 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 270
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.