RchiOBHm_Chr4g0430821

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000168
Physical Location & Seq
Forward (+)
55188642 .. 55190385
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39953

Sequence Viewer

Length: 1146 bp
ATGATAATGGTTAATAATTGGAGGCATGTTGTGGAGTGCAAGGGTGGCAGCGTCGTCCTCCATTTAGCAGAAATAAAGGTCTGTACGAAATCAAAAAAGGAGGACTGTAGGGACTGTAGCAGCGCAGCAAGGCTTGAACAATTATGCAGCGACTTGGCTTGGCTTGTGGCTTGTCGGCTAGGCCTAGACAATTATGAAGGATGTGGTGCTGAAACTGGCTCGGGCAGTAGTGATACGGCTAGAGAGTTCAAGGAGATTGTTTGGGGTATAATGGAAGAGGCTGGAAAGCCGAATTTAGGGGACTACTTTCCTGTGCTTAGGAAGCTTGACCCCCAAGGCATAAGGCGACGCTTCGCCAATTACTTCATGAGGATGTTAGGCTTCATTGGATCTGTTGTCAATGAAAGGTTGGAATCCAGAAAAGCGCATGATTATGTCACAAGTAATGATATGCTGGATACCCTTATAAACATCAGTCAAGAGAAAACTGAGGAGGATATGAACAACTCCCAAGTTGTTGACCATTTGTTTCTGGTTCTATTTGCTGCGGGCATAGATACAACTTCAGCCACATTGGAATGGGCAATGGCTGAGCTACTACACAACCCAAATAGCCTTTCTAAAGCTCAAGAAGAGCTGGATCAAATGATTGGAAAAGGAAAACCAATAGAGGAATCCGACATTGCTAGACTCCCTTACTTACAAGCAATAATCAAGGAAACCTTCTGGTTGCACCCAGCGGTTCCATTGCTACTGCCACGGAAAGCTGAAATAGATGTAGAAATTGGGGGTTATATTGTCCCTAAAGGTGCGCAAGTTCTTGTCAATGTTTGGGCCATAGGAAGAGACCCGGGCATTTGGGACAATCCAGATTCTTTTATACCGGAGAGGTTCTTAGACAACCAAATTGATGTTATGGCAAAAACCTTTGAGCTTATTCCGTTTGGTGGTGGGAGGAGAATCTGTCCAGGTTTGCCATTGGCAATGAGAATGTTGCACTTGATGTTGCGTTCACTCATCAACTGCTTTGATTGGAAGCTGGAAGATGGAGTTGTACCTGAGACCATGAACATGGAAGACAAGTTTGGCCTCACTTTACAAATGGCTCAGCCTCTCATAGCTCAGCCTCTCCTGCGGGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

381

Amino Acids

42.87

Weight (kDa)

5.08

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 77 - 364 1e-76 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000168)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61035 AT3G61035 AT3G61035 AT3G61035
fragaria_vesca FvH4_4g24041 FvH4_4g24050 FvH4_4g24050 FvH4_4g24052 FvH4_4g24053 FvH4_4g24060 FvH4_4g24060 FvH4_4g24070 FvH4_4g24080 FvH4_4g24230 FvH4_4g24640 FvH4_4g27900
malus_domestica MD06G1131200.v1.1 MD07G1012100.v1.1 MD12G1099200.v1.1 MD13G1115700.v1.1 MD13G1116100.v1.1 MD16G1115800.v1.1 MD16G1115900.v1.1 MD16G1116200.v1.1 MD16G1116300.v1.1
prunus_persica Prupe.1G229900_v2.0.a1 Prupe.1G230300_v2.0.a1 Prupe.1G230500_v2.0.a1 Prupe.1G230600_v2.0.a1 Prupe.1G230800_v2.0.a1 Prupe.1G230900_v2.0.a1 Prupe.1G231000_v2.0.a1 Prupe.1G231300_v2.0.a1 Prupe.1G231400_v2.0.a1 Prupe.6G237700_v2.0.a1
pyrus_communis pycom13g09840 pycom13g10020 pycom13g10040 pycom13g10080 pycom13g16060 pycom13g16080 pycom13g16090 pycom16g09820 pycom16g09830 pycom16g09860 pycom16g09870 pycom16g09880 pycom16g09920
rosa_chinensis RchiOBHm_Chr4g0417141 RchiOBHm_Chr4g0430071 RchiOBHm_Chr4g0430761 RchiOBHm_Chr4g0430771 RchiOBHm_Chr4g0430801 RchiOBHm_Chr4g0430821 RchiOBHm_Chr4g0430841 RchiOBHm_Chr4g0430851 RchiOBHm_Chr4g0431011 RchiOBHm_Chr4g0431021 RchiOBHm_Chr4g0431631 RchiOBHm_Chr4g0431641 RchiOBHm_Chr4g0431651 RchiOBHm_Chr4g0431661 RchiOBHm_Chr4g0431751 RchiOBHm_Chr7g0218001 RchiOBHm_Chr7g0218961 RchiOBHm_Chr7g0222351
rosa_laevigata RLG00000002068 RLG00000002315 RLG00000006893 RLG00000006900 RLG00000006902 RLG00000006934 RLG00000006946 RLG00000006947 RLG00000006949 RLG00000006951 RLG00000007006 RLG00000007007 RLG00000007928 RLG00000008331
rosa_multiflora Rmu_co8203018.1_g000001 Rmu_co8382437.1_g000001 Rmu_co8416363.1_g000001 Rmu_co8420493.1_g000001 Rmu_sc0000131.1_g000002 Rmu_sc0000289.1_g000009 Rmu_sc0001459.1_g000023 Rmu_sc0002620.1_g000010 Rmu_sc0002620.1_g000015 Rmu_sc0002620.1_g000019 Rmu_sc0003823.1_g000013 Rmu_sc0006263.1_g000004 Rmu_sc0007069.1_g000002 Rmu_sc0008769.1_g000020 Rmu_sc0009082.1_g000005 Rmu_sc0009440.1_g000005 Rmu_sc0016424.1_g000002 Rmu_sc0017974.1_g000003 Rmu_sc0023197.1_g000002 Rmu_sc0030497.1_g000002 Rmu_ssc0000150.1_g000031 Rmu_ssc0000340.1_g000006 Rmu_ssc0000487.1_g000004
rosa_roxburghii Rroxscaffold_3G00237050 Rroxscaffold_3G00240290 Rroxscaffold_4G00308920 Rroxscaffold_5G00360950 Rroxscaffold_5G00371870 Rroxscaffold_5G00371880 Rroxscaffold_5G00372470 Rroxscaffold_5G00372500 Rroxscaffold_5G00372510 Rroxscaffold_5G00372520 Rroxscaffold_5G00373090
rosa_rugosa Rorug01G0177500 Rorug03G0283700 Rorug04G0073600 Rorug04G0239800 Rorug04G0245700 Rorug04G0245800 Rorug04G0245800 Rorug04G0245900 Rorug04G0251500 Rorug04G0251600 Rorug04G0252200 Rorug07G0180200 Rorug07G0207700
rosa_samantha Rh4AG208700 Rh4AG296900 Rh4AG301700 Rh4AG301900 Rh4AG302000 Rh4AG302100 Rh4AG302200 Rh4AG304200 Rh4AG308200 Rh4AG308500 Rh4BG167800 Rh4BG205800 Rh4BG303400 Rh4BG309700 Rh4BG309800 Rh4BG310000 Rh4BG310100 Rh4BG310200 Rh4BG310300 Rh4BG315800 Rh4BG316300 Rh4CG219700 Rh4CG318900 Rh4CG326300 Rh4CG326400 Rh4CG326500 Rh4CG326600 Rh4CG331300 Rh7AG315200 Rh7AG323400 Rh7AG350100 Rh7BG314600 Rh7BG339700 Rh7CG332600 Rh7CG340200 Rh7CG340300 Rh7CG367600
rosa_wichuraiana Rw0G015620 Rw4G017690 Rw4G025740 Rw4G026220 Rw4G026240 Rw4G026260 Rw4G026720 Rw4G026730 Rw4G026830 Rw7G027400 Rw7G029550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
Acc16I TGCGCA 1 cut(s) 813
AciI CCGC 3 cut(s) 548, 740, 1135
AclWI GGATC 2 cut(s) 397, 648
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 2 cut(s) 85, 1056
AfiI CCNNNNNNNGG 2 cut(s) 296, 947
AgsI TTSAA 2 cut(s) 137, 250
AjnI CCWGG 1 cut(s) 967
AjuI GAANNNNNNNTTGG 4 cut(s) 601, 633, 1068, 1100
AluBI AGCT 8 cut(s) 325, 595, 626, 637, 767, 934, 1039, 1121
AluI AGCT 8 cut(s) 325, 595, 626, 637, 767, 934, 1039, 1121
Alw26I GTCTC 2 cut(s) 840, 1055
AlwI GGATC 2 cut(s) 397, 648
Ama87I CYCGRG 2 cut(s) 220, 850
AoxI GGCC 3 cut(s) 181, 834, 1087
ApeKI GCWGC 5 cut(s) 48, 120, 125, 147, 545
ApoI RAATTY 1 cut(s) 292
AspLEI GCGC 3 cut(s) 125, 427, 814
AspS9I GGNCC 1 cut(s) 834
AsuC2I CCSGG 2 cut(s) 851, 852
AvaI CYCGRG 2 cut(s) 220, 850
BbsI GAAGAC 1 cut(s) 1083
BbvI GCAGC 5 cut(s) 60, 132, 137, 159, 532
BccI CCATC 1 cut(s) 1040
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 969
BciVI GTATCC 1 cut(s) 451
BcnI CCSGG 2 cut(s) 851, 852
BcoDI GTCTC 2 cut(s) 840, 1055
BfaI CTAG 4 cut(s) 179, 185, 240, 687
BfmI CTRYAG 2 cut(s) 106, 115
BfuI GTATCC 1 cut(s) 451
BisI GCNGC 5 cut(s) 49, 121, 126, 148, 546
BlpI GCTNAGC 3 cut(s) 591, 1107, 1122
BlsI GCNGC 5 cut(s) 50, 122, 127, 149, 547
Bme1390I CCNGG 3 cut(s) 851, 852, 969
BmeT110I CYCGRG 2 cut(s) 220, 850
BmgT120I GGNCC 1 cut(s) 834
BmiI GGNNCC 1 cut(s) 744
BmrFI CCNGG 3 cut(s) 851, 852, 969
BpiI GAAGAC 1 cut(s) 1083
Bpu10I CCTNAGC 1 cut(s) 317
Bpu1102I GCTNAGC 3 cut(s) 591, 1107, 1122
BpuEI CTTGAG 1 cut(s) 612
BpuMI CCSGG 2 cut(s) 851, 852
BsaI GGTCTC 2 cut(s) 840, 1055
BsaJI CCNNGG 3 cut(s) 334, 758, 850
BsaWI WCCGGW 1 cut(s) 883
BsaXI ACNNNNNCTCC 2 cut(s) 949, 979
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 947
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 4 cut(s) 591, 681, 746, 990
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 3 cut(s) 334, 758, 850
BseGI GGATG 2 cut(s) 206, 378
BseLI CCNNNNNNNGG 2 cut(s) 296, 947
BseMI GCAATG 4 cut(s) 591, 681, 746, 990
BseMII CTCAG 5 cut(s) 480, 582, 1050, 1121, 1136
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 2 cut(s) 506, 970
BseXI GCAGC 5 cut(s) 60, 132, 137, 159, 532
BseYI CCCAGC 1 cut(s) 736
BshFI GGCC 3 cut(s) 183, 836, 1089
BsiHKCI CYCGRG 2 cut(s) 220, 850
BsiSI CCGG 2 cut(s) 851, 884
BslFI GGGAC 4 cut(s) 125, 314, 785, 875
BslI CCNNNNNNNGG 2 cut(s) 296, 947
BsmAI GTCTC 2 cut(s) 840, 1055
BsmFI GGGAC 4 cut(s) 125, 314, 785, 875
BsnI GGCC 3 cut(s) 183, 836, 1089
Bso31I GGTCTC 2 cut(s) 840, 1055
BsoBI CYCGRG 2 cut(s) 220, 850
Bsp143I GATC 2 cut(s) 389, 640
Bsp1720I GCTNAGC 3 cut(s) 591, 1107, 1122
BspACI CCGC 3 cut(s) 548, 740, 1135
BspANI GGCC 3 cut(s) 183, 836, 1089
BspCNI CTCAG 5 cut(s) 481, 583, 1051, 1120, 1135
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 744
BspPI GGATC 2 cut(s) 397, 648
BspQI GCTCTTC 1 cut(s) 627
BspTNI GGTCTC 2 cut(s) 840, 1055
BsrDI GCAATG 4 cut(s) 591, 681, 746, 990
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 334, 758, 850
BssMI GATC 2 cut(s) 389, 640
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 2 cut(s) 107, 116
Bst6I CTCTTC 3 cut(s) 270, 627, 838
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 7 cut(s) 317, 489, 591, 895, 1059, 1107, 1122
BstDSI CCRYGG 1 cut(s) 758
BstF5I GGATG 2 cut(s) 206, 378
BstHHI GCGC 3 cut(s) 125, 427, 814
BstKTI GATC 2 cut(s) 392, 643
BstMAI GTCTC 2 cut(s) 840, 1055
BstMBI GATC 2 cut(s) 389, 640
BstMWI GCNNNNNNNGC 3 cut(s) 45, 322, 1132
BstNI CCWGG 1 cut(s) 969
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 3 cut(s) 849, 850, 967
BstSFI CTRYAG 2 cut(s) 106, 115
BstV1I GCAGC 5 cut(s) 60, 132, 137, 159, 532
BstV2I GAAGAC 1 cut(s) 1083
BstX2I RGATCY 1 cut(s) 389
BstXI CCANNNNNNTGG 1 cut(s) 1072
BstYI RGATCY 1 cut(s) 389
BsuI GTATCC 1 cut(s) 451
BsuRI GGCC 3 cut(s) 183, 836, 1089
BtgI CCRYGG 1 cut(s) 758
BtsCI GGATG 2 cut(s) 206, 378
Cac8I GCNNGC 1 cut(s) 550
CciI TCATGA 1 cut(s) 366
CfoI GCGC 3 cut(s) 125, 427, 814
Cfr13I GGNCC 1 cut(s) 834
Cfr9I CCCGGG 1 cut(s) 850
CseI GACGC 2 cut(s) 40, 357
Csp6I GTAC 2 cut(s) 84, 1055
CviAII CATG 5 cut(s) 26, 367, 428, 1066, 1072
CviQI GTAC 2 cut(s) 84, 1055
DdeI CTNAG 7 cut(s) 317, 489, 591, 895, 1059, 1107, 1122
DpnI GATC 2 cut(s) 391, 642
DpnII GATC 2 cut(s) 389, 640
Eam1104I CTCTTC 3 cut(s) 270, 627, 838
EarI CTCTTC 3 cut(s) 270, 627, 838
Eco130I CCWWGG 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 183
Eco31I GGTCTC 2 cut(s) 840, 1055
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 2 cut(s) 220, 850
EcoRII CCWGG 1 cut(s) 967
EcoT14I CCWWGG 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 5 cut(s) 29, 370, 431, 1069, 1075
FalI AAGNNNNNCTT 2 cut(s) 707, 739
FaqI GGGAC 4 cut(s) 125, 314, 785, 875
FatI CATG 5 cut(s) 25, 366, 427, 1065, 1071
FauI CCCGC 2 cut(s) 541, 1128
Fnu4HI GCNGC 5 cut(s) 49, 121, 126, 148, 546
FokI GGATG 2 cut(s) 213, 385
Fsp4HI GCNGC 5 cut(s) 49, 121, 126, 148, 546
FspBI CTAG 4 cut(s) 179, 185, 240, 687
FspI TGCGCA 1 cut(s) 813
GlaI GCGC 3 cut(s) 124, 426, 813
GluI GCNGC 5 cut(s) 49, 121, 126, 148, 546
GsaI CCCAGC 1 cut(s) 740
HaeIII GGCC 3 cut(s) 183, 836, 1089
HapII CCGG 2 cut(s) 851, 884
HgaI GACGC 2 cut(s) 40, 357
HhaI GCGC 3 cut(s) 125, 427, 814
Hin1II CATG 5 cut(s) 29, 370, 431, 1069, 1075
Hin6I GCGC 3 cut(s) 123, 425, 812
HinP1I GCGC 3 cut(s) 123, 425, 812
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 5 cut(s) 413, 674, 690, 872, 960
HpaII CCGG 2 cut(s) 851, 884
Hpy166II GTNNAC 2 cut(s) 520, 1013
Hpy188I TCNGA 1 cut(s) 679
Hpy188III TCNNGA 5 cut(s) 367, 417, 479, 629, 869
Hpy8I GTNNAC 2 cut(s) 520, 1013
Hpy99I CGWCG 2 cut(s) 56, 351
HpyAV CCTTC 2 cut(s) 191, 733
HpyCH4III ACNGT 2 cut(s) 107, 116
HpyCH4V TGCA 4 cut(s) 39, 147, 733, 997
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 322, 1132
HpyF3I CTNAG 7 cut(s) 317, 489, 591, 895, 1059, 1107, 1122
Hsp92II CATG 5 cut(s) 29, 370, 431, 1069, 1075
HspAI GCGC 3 cut(s) 123, 425, 812
Kzo9I GATC 2 cut(s) 389, 640
LguI GCTCTTC 1 cut(s) 627
Lsp1109I GCAGC 5 cut(s) 60, 132, 137, 159, 532
MaeI CTAG 4 cut(s) 179, 185, 240, 687
MaeIII GTNAC 1 cut(s) 436
MalI GATC 2 cut(s) 391, 642
MboI GATC 2 cut(s) 389, 640
MboII GAAGA 5 cut(s) 287, 644, 855, 1055, 1088
MflI RGATCY 1 cut(s) 389
MluCI AATT 7 cut(s) 16, 140, 190, 292, 358, 783, 906
MlyI GAGTC 1 cut(s) 684
MmeI TCCRAC 2 cut(s) 390, 702
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 4 cut(s) 371, 432, 577, 1070
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 2 cut(s) 851, 884
MspR9I CCNGG 3 cut(s) 851, 852, 969
MvaI CCWGG 1 cut(s) 969
MwoI GCNNNNNNNGC 3 cut(s) 45, 322, 1132
NciI CCSGG 2 cut(s) 851, 852
NdeII GATC 2 cut(s) 389, 640
NlaIII CATG 5 cut(s) 29, 370, 431, 1069, 1075
NlaIV GGNNCC 1 cut(s) 744
NmuCI GTSAC 1 cut(s) 436
NsbI TGCGCA 1 cut(s) 813
NspI RCATGY 1 cut(s) 29
PagI TCATGA 1 cut(s) 366
PceI AGGCCT 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 627
PfeI GAWTC 4 cut(s) 413, 674, 872, 960
PkrI GCNGC 5 cut(s) 50, 122, 127, 149, 547
PleI GAGTC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 684
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 967
PspFI CCCAGC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 1 cut(s) 744
PspPI GGNCC 1 cut(s) 834
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 2 cut(s) 85, 1056
RsaNI GTAC 2 cut(s) 84, 1055
RseI CAYNNNNRTG 4 cut(s) 371, 432, 577, 1070
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 5 cut(s) 49, 121, 126, 148, 546
Sau3AI GATC 2 cut(s) 389, 640
Sau96I GGNCC 1 cut(s) 834
SchI GAGTC 1 cut(s) 684
ScrFI CCNGG 3 cut(s) 851, 852, 969
SfcI CTRYAG 2 cut(s) 106, 115
SmaI CCCGGG 1 cut(s) 852
SmiMI CAYNNNNRTG 4 cut(s) 371, 432, 577, 1070
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
Sse9I AATT 7 cut(s) 16, 140, 190, 292, 358, 783, 906
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 3 cut(s) 548, 740, 1135
SspMI CTAG 4 cut(s) 179, 185, 240, 687
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 849, 850, 967
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 107, 116
TasI AATT 7 cut(s) 16, 140, 190, 292, 358, 783, 906
TfiI GAWTC 4 cut(s) 413, 674, 872, 960
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 5 cut(s) 48, 120, 125, 147, 545
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 6 cut(s) 210, 355, 373, 417, 515, 1082
TspGWI ACGGA 2 cut(s) 775, 930
TspMI CCCGGG 1 cut(s) 850
XapI RAATTY 1 cut(s) 292
XceI RCATGY 1 cut(s) 29
XmaI CCCGGG 1 cut(s) 850
XspI CTAG 4 cut(s) 179, 185, 240, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.