Rw4G026230

Translation initiation factor eIF-2B subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
52377993 .. 52379978
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G026230.1

Sequence Viewer

Length: 1986 bp
ATGGGTGCAAAGAAGAAAGGTGCATCGAGGGGTTCCGAGGACTCTGAGGAATTGGGACAGGTTCCCCTGCAGGCCATCCTCTTAGCCGATAGTTTTACTACCAAATTCTACCCCGTCACCCTTGAACGCCCCAAAGTGCTTTTGCCATTAGTAAATGTCCCCATGATCAGCTACACCTTAGCTTGGCTCAAGTCTGCTGGAGTCAAGGAGGTCTTTGTTTTCTGCTGCGCTCACTCCAAGCAAGTGATCAATTATCTAGAGACTTCTGGGTGGTTTTGTCAACCTGGCTGCTTCGCAGTCACCGCAATTGAGTCACATGCTTCTGCTAGTGCTGGAGATGCTCTGCGTTTGATATACGAGCGCGATGTGATCCATGGAGATTTTGTCCTCATAAGTGGGGATACTGTGAGCGACATGTCGCTTACTCAAGTGCTTCAAGAACATAAAGAGAGAAGAAAGAAAGATAATAATGCTGTAATGACAATTGTTATCAAACCTTCTCAAATCATGACCCACCAATCTCGATTACTTGGCACTGGTGAGCTGTTTATGGCAATAGATCCTAGCACGAAGCAGCTTTTGTGTTACGAGGAAAAGGCAGACCATGCAAAGGAATCTATATTTTGTCTTGATACGTCGTTGCTTGTTGGTAAATCTTCGATTTCTCTGCATAATGATAGAGAGGATTGCTATATCGACATCTGCTCTCCTGAAGTCCTCAGCCTTCTTGCAGACAATTTTGATTACGAAGATCTTCGTCATGATTTATTGAATGGATTGCTTGACGATGACGTTATGGGATACAAGATATTCACACATGAAATTGACTCTAGTTATGCTGCTAAGATTGACAACTTCCGAAGCTACGATGCAGTTAGTAAGGACATCATTCAGAGAGGGAGTTACCCCTCGATGCCAGATGTTAAGTTTACAGAAATCGGACATGGCACCAAGATTGCGGACAATACTGAAATTTTAAGTTCTGTTATTGGGGAAGGGTGTTCTATTGGGTCAAATATTTCCATAGAAGGTTCTTATATATTGGACAATGTCACCATCGAAGATGGCTGCAAGCTAAAGCATGCTGTGGTTTGTGATGGAGTGGTCATGAAGTCCGGGGCAATTTTGGAACCTGGAGTAGTTTTGTCTTTCCAGGTTGTTTTAGGAGAACAATGCACTGTTCCTTCATACTCAAAGATATCGTTACTTCAACAACCAACCGAACTTGCAGACGATTATAGCAATGGAATTGCAGAAATTTCGCGGCATATTAATAGTAATGTAAATAAACCAAATGAGGTTGGTACTGGTGGGGCTGGTTATGTTTGGTCAATTTGTGATGACGAGTGGAGAAATTCAGTTGCTCCCATTCCTGCAGACAAACTTGCTGAGGTGATACGTACCACGGATGGAAGCAGTCTCACTCCTTCAGGAGAGGTAAAACTTGAATCTAGTGATTCTGAAGACAGCGATGAAGATACTTCTGACTTTGAGAATGAGGTTGAAGCAACCTTCCTAAGAGCCGTGGATGAAAATATAAAACTAGAGCATGTAGTCTTGGAAGTGAACTCGCTGAGATTGTCATCCAACAAGGAAACTGCAATTTGTGCTGGAGCTATCTTTTACTCGATGATGAAATTGGCATTGGAAGCTCCACATGACTCGGCAAGCGAATTGGTTAGAGCTGCTTCTAGGGTAATTTCAGAATGGAAACACCTGCTCAAGAACTACCTATCAGACATAGATGAGGAGATAGAAGTAATAATGAAGTTTGAAGAAATGTGTTTGGAGTCTGCCAAGGAATTCTCCTCTGTGTTCGATAAGATACTGTATCAACTGTATGACCAAGAAGTTATCCAAGAAGAAGCTATTCTGAGGTGGGTTGAAGAAAAGACAGATGCGGATGAATCAGACAGAATTTTCGTCAGGCAGGCGGAAACGTTTGTCCAATGGTTGAGAGAGGCAGAAGAGGATGATGAAGAATAA

Protein Analysis

661

Amino Acids

73.41

Weight (kDa)

4.54

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 25 - 162 7.7e-11 Nucleotidyl transferase
LbH_EIF2B PF25084 311 - 394 3.3e-28 EIF2B subunit epsilon LbH domain
GMPPB_C PF25087 313 - 395 7.5e-08 GMPPB C-terminal domain
Hexapep_GlmU PF24894 319 - 374 9.2e-06 GlmU-like, C-terminal hexapeptide
W2 PF02020 584 - 661 5.8e-17 eIF4-gamma/eIF5/eIF2-epsilon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017287)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1725
Acc36I ACCTGC 1 cut(s) 1725
AccB1I GGYRCC 1 cut(s) 947
AccII CGCG 2 cut(s) 363, 1264
AciI CCGC 5 cut(s) 303, 959, 1264, 1901, 1934
AclI AACGTT 1 cut(s) 1940
AclWI GGATC 2 cut(s) 364, 554
AcsI RAATTY 6 cut(s) 104, 972, 1257, 1354, 1802, 1917
AcuI CTGAAG 3 cut(s) 732, 1413, 1482
AfaI GTAC 2 cut(s) 1306, 1402
AfiI CCNNNNNNNGG 2 cut(s) 183, 610
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 8 cut(s) 125, 437, 772, 1211, 1448, 1505, 1775, 1886
AjnI CCWGG 3 cut(s) 283, 1132, 1152
AjuI GAANNNNNNNTTGG 2 cut(s) 1628, 1660
Alw26I GTCTC 2 cut(s) 254, 1424
AlwI GGATC 2 cut(s) 364, 554
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 6 cut(s) 225, 288, 574, 839, 1068, 1685
ApoI RAATTY 6 cut(s) 104, 972, 1257, 1354, 1802, 1917
ArsI GACNNNNNNTTYG 2 cut(s) 1904, 1936
AseI ATTAAT 1 cut(s) 1272
Asp700I GAANNNNTTC 2 cut(s) 753, 1869
AspLEI GCGC 2 cut(s) 230, 363
AsuC2I CCSGG 1 cut(s) 1117
AsuHPI GGTGA 5 cut(s) 109, 292, 551, 1045, 1405
BanI GGYRCC 1 cut(s) 947
BbsI GAAGAC 1 cut(s) 1470
BbvCI CCTCAGC 2 cut(s) 719, 1389
BbvI GCAGC 6 cut(s) 212, 275, 586, 826, 1055, 1672
BccI CCATC 5 cut(s) 83, 1058, 1064, 1091, 1403
BceAI ACGGC 1 cut(s) 1508
BcgI CGANNNNNNTGC 4 cut(s) 649, 683, 1242, 1276
BciT130I CCWGG 3 cut(s) 285, 1134, 1154
BciVI GTATCC 2 cut(s) 394, 794
BclI TGATCA 2 cut(s) 165, 246
BcnI CCSGG 1 cut(s) 1117
BcoDI GTCTC 2 cut(s) 254, 1424
BfaI CTAG 7 cut(s) 257, 327, 564, 831, 1452, 1544, 1692
BfmI CTRYAG 2 cut(s) 68, 1374
BfuAI ACCTGC 1 cut(s) 1725
BfuI GTATCC 2 cut(s) 394, 794
BglII AGATCT 1 cut(s) 751
BisI GCNGC 7 cut(s) 226, 289, 575, 840, 1069, 1265, 1686
BlsI GCNGC 7 cut(s) 227, 290, 576, 841, 1070, 1266, 1687
Bme1390I CCNGG 4 cut(s) 285, 1117, 1134, 1154
BmiI GGNNCC 4 cut(s) 34, 63, 949, 1131
BmrFI CCNGG 4 cut(s) 285, 1117, 1134, 1154
BmsI GCATC 5 cut(s) 32, 328, 859, 903, 1888
BpiI GAAGAC 1 cut(s) 1470
BpmI CTGGAG 4 cut(s) 219, 354, 1155, 1632
Bpu10I CCTNAGC 3 cut(s) 178, 719, 1389
BpuEI CTTGAG 3 cut(s) 173, 411, 1706
BpuMI CCSGG 1 cut(s) 1117
BsaAI YACGTR 1 cut(s) 1400
BsaBI GATNNNNATC 1 cut(s) 1582
BsaJI CCNNGG 6 cut(s) 36, 373, 1116, 1404, 1524, 1797
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 610
Bse1I ACTGG 2 cut(s) 541, 1312
Bse3DI GCAATG 1 cut(s) 1249
Bse8I GATNNNNATC 1 cut(s) 1582
BseBI CCWGG 3 cut(s) 285, 1134, 1154
BseDI CCNNGG 6 cut(s) 36, 373, 1116, 1404, 1524, 1797
BseGI GGATG 6 cut(s) 75, 1414, 1534, 1583, 1909, 1978
BseJI GATNNNNATC 1 cut(s) 1582
BseLI CCNNNNNNNGG 2 cut(s) 183, 610
BseMI GCAATG 1 cut(s) 1249
BseMII CTCAG 5 cut(s) 36, 733, 1380, 1565, 1865
BseNI ACTGG 2 cut(s) 541, 1312
BseRI GAGGAG 2 cut(s) 1763, 1798
BseXI GCAGC 6 cut(s) 212, 275, 586, 826, 1055, 1672
Bsh1236I CGCG 2 cut(s) 363, 1264
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 947
BsiSI CCGG 1 cut(s) 1116
BslFI GGGAC 2 cut(s) 69, 143
BslI CCNNNNNNNGG 2 cut(s) 183, 610
BsmAI GTCTC 2 cut(s) 254, 1424
BsmFI GGGAC 2 cut(s) 69, 143
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 5 cut(s) 165, 246, 369, 559, 751
Bsp19I CCATGG 1 cut(s) 373
BspACI CCGC 5 cut(s) 303, 959, 1264, 1901, 1934
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 5 cut(s) 37, 732, 1381, 1566, 1866
BspFNI CGCG 2 cut(s) 363, 1264
BspHI TCATGA 3 cut(s) 507, 760, 1107
BspLI GGNNCC 4 cut(s) 34, 63, 949, 1131
BspMAI CTGCAG 2 cut(s) 72, 1378
BspMI ACCTGC 1 cut(s) 1725
BspPI GGATC 2 cut(s) 364, 554
BspT107I GGYRCC 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 1249
BsrI ACTGG 2 cut(s) 541, 1312
BssECI CCNNGG 6 cut(s) 36, 373, 1116, 1404, 1524, 1797
BssMI GATC 5 cut(s) 165, 246, 369, 559, 751
BssT1I CCWWGG 2 cut(s) 373, 1797
Bst2UI CCWGG 3 cut(s) 285, 1134, 1154
Bst4CI ACNGT 4 cut(s) 406, 1180, 1830, 1839
Bst6I CTCTTC 1 cut(s) 1962
BstAPI GCANNNNNTGC 2 cut(s) 605, 1607
BstBAI YACGTR 1 cut(s) 1400
BstC8I GCNNGC 5 cut(s) 72, 1073, 1083, 1669, 1932
BstDEI CTNAG 9 cut(s) 45, 82, 178, 719, 843, 1389, 1517, 1574, 1874
BstDSI CCRYGG 3 cut(s) 373, 1404, 1524
BstF5I GGATG 6 cut(s) 75, 1414, 1534, 1583, 1909, 1978
BstFNI CGCG 2 cut(s) 363, 1264
BstHHI GCGC 2 cut(s) 230, 363
BstKTI GATC 5 cut(s) 168, 249, 372, 562, 754
BstMAI GTCTC 2 cut(s) 254, 1424
BstMBI GATC 5 cut(s) 165, 246, 369, 559, 751
BstMWI GCNNNNNNNGC 5 cut(s) 302, 338, 605, 1607, 1649
BstNI CCWGG 3 cut(s) 285, 1134, 1154
BstNSI RCATGY 4 cut(s) 320, 418, 1085, 1553
BstSCI CCNGG 4 cut(s) 283, 1115, 1132, 1152
BstSFI CTRYAG 2 cut(s) 68, 1374
BstSNI TACGTA 1 cut(s) 1400
BstUI CGCG 2 cut(s) 363, 1264
BstV1I GCAGC 6 cut(s) 212, 275, 586, 826, 1055, 1672
BstV2I GAAGAC 1 cut(s) 1470
BstX2I RGATCY 2 cut(s) 559, 751
BstYI RGATCY 2 cut(s) 559, 751
BsuI GTATCC 2 cut(s) 394, 794
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 3 cut(s) 373, 1404, 1524
BtgZI GCGATG 2 cut(s) 378, 1485
BtsCI GGATG 6 cut(s) 75, 1414, 1534, 1583, 1909, 1978
BtsIMutI CAGTG 2 cut(s) 534, 1176
BveI ACCTGC 1 cut(s) 1725
Cac8I GCNNGC 5 cut(s) 72, 1073, 1083, 1669, 1932
CciI TCATGA 3 cut(s) 507, 760, 1107
CfoI GCGC 2 cut(s) 230, 363
Csp6I GTAC 2 cut(s) 1305, 1401
CviQI GTAC 2 cut(s) 1305, 1401
DdeI CTNAG 9 cut(s) 45, 82, 178, 719, 843, 1389, 1517, 1574, 1874
DpnI GATC 5 cut(s) 167, 248, 371, 561, 753
DpnII GATC 5 cut(s) 165, 246, 369, 559, 751
Eam1104I CTCTTC 1 cut(s) 1962
EarI CTCTTC 1 cut(s) 1962
EciI GGCGGA 1 cut(s) 1949
Eco105I TACGTA 1 cut(s) 1400
Eco130I CCWWGG 2 cut(s) 373, 1797
Eco32I GATATC 1 cut(s) 1200
Eco57I CTGAAG 3 cut(s) 732, 1413, 1482
EcoRI GAATTC 1 cut(s) 1802
EcoRII CCWGG 3 cut(s) 283, 1132, 1152
EcoRV GATATC 1 cut(s) 1200
EcoT14I CCWWGG 2 cut(s) 373, 1797
ErhI CCWWGG 2 cut(s) 373, 1797
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 2 cut(s) 69, 143
FbaI TGATCA 2 cut(s) 165, 246
Fnu4HI GCNGC 7 cut(s) 226, 289, 575, 840, 1069, 1265, 1686
FokI GGATG 5 cut(s) 62, 1421, 1541, 1570, 1916
Fsp4HI GCNGC 7 cut(s) 226, 289, 575, 840, 1069, 1265, 1686
FspBI CTAG 7 cut(s) 257, 327, 564, 831, 1452, 1544, 1692
GlaI GCGC 2 cut(s) 229, 362
GluI GCNGC 7 cut(s) 226, 289, 575, 840, 1069, 1265, 1686
GsuI CTGGAG 4 cut(s) 219, 354, 1155, 1632
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 1116
HhaI GCGC 2 cut(s) 230, 363
Hin6I GCGC 2 cut(s) 228, 361
HinP1I GCGC 2 cut(s) 228, 361
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HpaII CCGG 1 cut(s) 1116
HphI GGTGA 5 cut(s) 109, 292, 551, 1045, 1405
Hpy166II GTNNAC 3 cut(s) 281, 930, 1567
Hpy8I GTNNAC 3 cut(s) 281, 930, 1567
Hpy99I CGWCG 1 cut(s) 640
HpyAV CCTTC 7 cut(s) 507, 734, 989, 1022, 1194, 1437, 1522
HpyCH4III ACNGT 4 cut(s) 406, 1180, 1830, 1839
HpyCH4IV ACGT 4 cut(s) 635, 792, 1399, 1940
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 338, 605, 1607, 1649
HpyF3I CTNAG 9 cut(s) 45, 82, 178, 719, 843, 1389, 1517, 1574, 1874
HpySE526I ACGT 4 cut(s) 635, 792, 1399, 1940
HspAI GCGC 2 cut(s) 228, 361
Ksp22I TGATCA 2 cut(s) 165, 246
Kzo9I GATC 5 cut(s) 165, 246, 369, 559, 751
LmnI GCTCC 3 cut(s) 1369, 1613, 1657
Lsp1109I GCAGC 6 cut(s) 212, 275, 586, 826, 1055, 1672
LweI GCATC 5 cut(s) 32, 328, 859, 903, 1888
MaeI CTAG 7 cut(s) 257, 327, 564, 831, 1452, 1544, 1692
MaeII ACGT 4 cut(s) 635, 792, 1399, 1940
MaeIII GTNAC 7 cut(s) 115, 298, 312, 584, 902, 1051, 1203
MalI GATC 5 cut(s) 167, 248, 371, 561, 753
MboI GATC 5 cut(s) 165, 246, 369, 559, 751
MfeI CAATTG 2 cut(s) 306, 483
MflI RGATCY 2 cut(s) 559, 751
MlyI GAGTC 6 cut(s) 35, 210, 320, 821, 1655, 1799
MmeI TCCRAC 1 cut(s) 1611
MroXI GAANNNNTTC 2 cut(s) 753, 1869
MseI TTAA 3 cut(s) 924, 977, 1272
MspI CCGG 1 cut(s) 1116
MspR9I CCNGG 4 cut(s) 285, 1117, 1134, 1154
MunI CAATTG 2 cut(s) 306, 483
MvaI CCWGG 3 cut(s) 285, 1134, 1154
MvnI CGCG 2 cut(s) 363, 1264
MwoI GCNNNNNNNGC 5 cut(s) 302, 338, 605, 1607, 1649
NciI CCSGG 1 cut(s) 1117
NcoI CCATGG 1 cut(s) 373
NdeII GATC 5 cut(s) 165, 246, 369, 559, 751
NlaIV GGNNCC 4 cut(s) 34, 63, 949, 1131
NmeAIII GCCGAG 1 cut(s) 1643
NmuCI GTSAC 4 cut(s) 115, 298, 312, 1051
NspI RCATGY 4 cut(s) 320, 418, 1085, 1553
PaeI GCATGC 1 cut(s) 1085
PagI TCATGA 3 cut(s) 507, 760, 1107
PaqCI CACCTGC 1 cut(s) 1725
PciI ACATGT 1 cut(s) 414
PdmI GAANNNNTTC 2 cut(s) 753, 1869
PfeI GAWTC 4 cut(s) 614, 1448, 1457, 1907
PflFI GACNNNGTC 1 cut(s) 1049
PkrI GCNGC 7 cut(s) 227, 290, 576, 841, 1070, 1266, 1687
PleI GAGTC 6 cut(s) 35, 209, 319, 821, 1655, 1798
PpsI GAGTC 6 cut(s) 35, 209, 319, 821, 1655, 1798
Ppu21I YACGTR 1 cut(s) 1400
PscI ACATGT 1 cut(s) 414
PshBI ATTAAT 1 cut(s) 1272
Psp1406I AACGTT 1 cut(s) 1940
Psp6I CCWGG 3 cut(s) 283, 1132, 1152
PspGI CCWGG 3 cut(s) 283, 1132, 1152
PspN4I GGNNCC 4 cut(s) 34, 63, 949, 1131
PstI CTGCAG 2 cut(s) 72, 1378
PsuI RGATCY 2 cut(s) 559, 751
PsyI GACNNNGTC 1 cut(s) 1049
RsaI GTAC 2 cut(s) 1306, 1402
RsaNI GTAC 2 cut(s) 1305, 1401
SaqAI TTAA 3 cut(s) 924, 977, 1272
SatI GCNGC 7 cut(s) 226, 289, 575, 840, 1069, 1265, 1686
Sau3AI GATC 5 cut(s) 165, 246, 369, 559, 751
SbfI CCTGCAGG 1 cut(s) 72
SchI GAGTC 6 cut(s) 35, 210, 320, 821, 1655, 1799
ScrFI CCNGG 4 cut(s) 285, 1117, 1134, 1154
SdaI CCTGCAGG 1 cut(s) 72
SfaNI GCATC 5 cut(s) 32, 328, 859, 903, 1888
SfcI CTRYAG 2 cut(s) 68, 1374
SmlI CTYRAG 3 cut(s) 188, 426, 1721
SmoI CTYRAG 3 cut(s) 188, 426, 1721
SnaBI TACGTA 1 cut(s) 1400
SphI GCATGC 1 cut(s) 1085
Sse8387I CCTGCAGG 1 cut(s) 72
SsiI CCGC 5 cut(s) 303, 959, 1264, 1901, 1934
SspI AATATT 1 cut(s) 1018
SspMI CTAG 7 cut(s) 257, 327, 564, 831, 1452, 1544, 1692
StyD4I CCNGG 4 cut(s) 283, 1115, 1132, 1152
StyI CCWWGG 2 cut(s) 373, 1797
TaaI ACNGT 4 cut(s) 406, 1180, 1830, 1839
TaiI ACGT 4 cut(s) 638, 795, 1402, 1943
TaqI TCGA 8 cut(s) 26, 523, 659, 696, 911, 1059, 1628, 1818
TauI GCSGC 1 cut(s) 1267
TfiI GAWTC 4 cut(s) 614, 1448, 1457, 1907
Tru1I TTAA 3 cut(s) 924, 977, 1272
Tru9I TTAA 3 cut(s) 924, 977, 1272
TscAI CASTG 2 cut(s) 541, 1183
TseFI GTSAC 4 cut(s) 115, 298, 312, 1051
TseI GCWGC 6 cut(s) 225, 288, 574, 839, 1068, 1685
Tsp45I GTSAC 4 cut(s) 115, 298, 312, 1051
TspDTI ATGAA 8 cut(s) 834, 1124, 1176, 1488, 1545, 1649, 1781, 1920
TspGWI ACGGA 1 cut(s) 1421
TspRI CASTG 2 cut(s) 541, 1183
Tth111I GACNNNGTC 1 cut(s) 1049
VspI ATTAAT 1 cut(s) 1272
XapI RAATTY 6 cut(s) 104, 972, 1257, 1354, 1802, 1917
XbaI TCTAGA 1 cut(s) 256
XceI RCATGY 4 cut(s) 320, 418, 1085, 1553
XmnI GAANNNNTTC 2 cut(s) 753, 1869
XspI CTAG 7 cut(s) 257, 327, 564, 831, 1452, 1544, 1692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.