Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8374445.1

Orthogroup ID

OG0018552

Physical Location & Seq

Genomic Coordinates Reverse (-)

723 .. 1138

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8374445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 416 bp

gggccaacaccacgtttgcttcggctatacagattggtgaccctgtttcgattgatagagctgtgtatgctctcaagaattgcgatgggattgtggaggaagctactgaggaggagctgatggatgcaatggcacaagctgattctactgggatgtttatatgccctcacaccggggtggctctaacggcattgaagaagcttaggaagagcggggttattggggttagtgatcggaccgtggtggttagcactgcccatggtttgaagtttacacagtccaaggttgattatcactccaaggccataccggagatggcttgccggtttgccaatccacccacggaggtcaaggcggagtttggggcagtcatggatgttcttcaggagtttttgaagtctaagaagtcgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

137

Amino Acids

14.72

Weight (kDa)

6.34

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018552)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356311 RchiOBHm_Chr4g0415221
rosa_laevigata	RLG00000009747
rosa_multiflora	Rmu_co8170908.1_g000001 Rmu_co8374445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00228730 Rroxscaffold_5G00347460
rosa_rugosa	Rorug03G0221500.1
rosa_samantha	Rh2AG556000 Rh3DG267000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	212
AciI	CCGC	2 cut(s)	212, 355
AcuI	CTGAAG	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	195, 267, 396
AleI	CACNNNNGTG	1 cut(s)	175
AluBI	AGCT	5 cut(s)	61, 103, 117, 139, 201
AluI	AGCT	5 cut(s)	61, 103, 117, 139, 201
AoxI	GGCC	2 cut(s)	2, 302
AspS9I	GGNCC	2 cut(s)	2, 236
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	236
BccI	CCATC	3 cut(s)	79, 114, 309
BceAI	ACGGC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	2, 236
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	174
BsaJI	CCNNGG	6 cut(s)	173, 239, 258, 281, 299, 341
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	134
BseDI	CCNNGG	6 cut(s)	173, 239, 258, 281, 299, 341
BseGI	GGATG	3 cut(s)	129, 158, 381
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	2 cut(s)	124, 127
BshFI	GGCC	2 cut(s)	4, 304
BsiSI	CCGG	3 cut(s)	173, 310, 324
BslI	CCNNNNNNNGG	1 cut(s)	172
BsnI	GGCC	2 cut(s)	4, 304
Bsp143I	GATC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	2 cut(s)	212, 355
BspANI	GGCC	2 cut(s)	4, 304
BspCNI	CTCAG	1 cut(s)	99
BspQI	GCTCTTC	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	6 cut(s)	173, 239, 258, 281, 299, 341
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	3 cut(s)	258, 281, 299
Bst4CI	ACNGT	2 cut(s)	240, 278
Bst6I	CTCTTC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	3 cut(s)	107, 202, 401
BstDSI	CCRYGG	3 cut(s)	239, 258, 341
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	3 cut(s)	129, 158, 381
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 187
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	4, 304
BtgI	CCRYGG	3 cut(s)	239, 258, 341
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	129, 158, 381
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	2 cut(s)	2, 236
CpoI	CGGWCCG	1 cut(s)	236
CspI	CGGWCCG	1 cut(s)	236
CviAII	CATG	2 cut(s)	259, 372
DdeI	CTNAG	3 cut(s)	107, 202, 401
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	370
Eco130I	CCWWGG	3 cut(s)	258, 281, 299
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	367
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoT14I	CCWWGG	3 cut(s)	258, 281, 299
ErhI	CCWWGG	3 cut(s)	258, 281, 299
FaeI	CATG	2 cut(s)	262, 375
FaiI	YATR	7 cut(s)	28, 68, 160, 162, 260, 307, 373
FatI	CATG	2 cut(s)	258, 371
FauI	CCCGC	1 cut(s)	205
FokI	GGATG	3 cut(s)	136, 165, 388
HaeIII	GGCC	2 cut(s)	4, 304
HapII	CCGG	3 cut(s)	173, 310, 324
Hin1II	CATG	2 cut(s)	262, 375
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	3 cut(s)	173, 310, 324
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	2 cut(s)	75, 385
Hpy8I	GTNNAC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	240, 278
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 187
HpyF3I	CTNAG	3 cut(s)	107, 202, 401
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	262, 375
Kzo9I	GATC	1 cut(s)	231
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	6 cut(s)	56, 134, 186, 323, 337, 370
LweI	GCATC	1 cut(s)	114
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	233
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	1 cut(s)	231
MboII	GAAGA	3 cut(s)	207, 219, 373
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	5 cut(s)	90, 102, 105, 176, 339
MslI	CAYNNNNRTG	1 cut(s)	175
MspI	CCGG	3 cut(s)	173, 310, 324
MspR9I	CCNGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	67, 187
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	2 cut(s)	262, 375
NmuCI	GTSAC	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	142
PspEI	GGTNACC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	2, 236
RseI	CAYNNNNRTG	1 cut(s)	175
Rsr2I	CGGWCCG	1 cut(s)	236
RsrII	CGGWCCG	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	202
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	2 cut(s)	2, 236
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	8 cut(s)	16, 63, 105, 119, 141, 203, 287, 350
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	2 cut(s)	212, 355
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	3 cut(s)	258, 281, 299
TaaI	ACNGT	2 cut(s)	240, 278
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	49, 409
TasI	AATT	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.