Rh2AG556000

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018552
Physical Location & Seq
Forward (+)
78653123 .. 78662630
9508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG556000.1

Sequence Viewer

Length: 429 bp
ATGAGTTCTTCATCATCAGTAGCAAACAGGGCTTGGGTAGTTGCAGCAAGTGTGGGAGTTGTGGAGGCCTTGAAAAGAGACCAAGGGATCTGCAGGTGGAGTCGAACAATGAGATTGGCGCAACAACATGCCAAGACTCACCTCAGATCTTTTTCTCAGGCGAACCAGAGACTCTCTTCCTCATACTCTGCTTTGTTTTCAAGAAAACTGAGAGATGACAAGCCGAAGCAGTCTGAGGAATCTATGAGGAATAGTTTGGCAAAGAGTGAACACTACAAACTCTTGAAAGGTCGCCCATTTCAGTTTCAGATTGGGGATCCTGTTTGGATTGACAGAGCTATGTATGCTCTGAAGAAGTCAGATGGGATTATGGAGGAGGTGACCGAGGAGGAGTTGATGGATGCCAATGGCGCAAGTGGATTCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

142

Amino Acids

16.09

Weight (kDa)

9.62

Isoelectric Point (pI)

59.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 14 - 84 7.5e-18 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018552)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0356311 RchiOBHm_Chr4g0415221
rosa_laevigata RLG00000009747
rosa_multiflora Rmu_co8170908.1_g000001 Rmu_co8374445.1_g000001
rosa_roxburghii Rroxscaffold_3G00228730 Rroxscaffold_5G00347460
rosa_rugosa Rorug03G0221500.1
rosa_samantha Rh2AG556000 Rh3DG267000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 84
Acc36I ACCTGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 95, 311, 324
AcuI CTGAAG 1 cut(s) 371
AgsI TTSAA 3 cut(s) 73, 201, 286
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
Alw26I GTCTC 2 cut(s) 72, 163
AlwI GGATC 3 cut(s) 95, 311, 324
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 44
AspLEI GCGC 2 cut(s) 121, 413
AsuHPI GGTGA 2 cut(s) 131, 391
BamHI GGATCC 1 cut(s) 316
BbvI GCAGC 1 cut(s) 56
BccI CCATC 2 cut(s) 356, 391
BcoDI GTCTC 2 cut(s) 72, 163
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 84
BglII AGATCT 1 cut(s) 146
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 1 cut(s) 391
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 82, 384
BseDI CCNNGG 2 cut(s) 82, 384
BseGI GGATG 1 cut(s) 406
BseMII CTCAG 4 cut(s) 157, 170, 200, 225
BseRI GAGGAG 3 cut(s) 389, 401, 404
BseXI GCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 72, 163
BsnI GGCC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 87, 146, 316
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 4 cut(s) 156, 169, 201, 226
BspLI GGNNCC 1 cut(s) 318
BspMAI CTGCAG 1 cut(s) 95
BspMI ACCTGC 1 cut(s) 84
BspPI GGATC 3 cut(s) 95, 311, 324
BspTNI GGTCTC 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 82, 384
BssMI GATC 3 cut(s) 87, 146, 316
BssT1I CCWWGG 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 181
BstDEI CTNAG 4 cut(s) 143, 156, 209, 234
BstEII GGTNACC 1 cut(s) 379
BstF5I GGATG 1 cut(s) 406
BstHHI GCGC 2 cut(s) 121, 413
BstKTI GATC 3 cut(s) 90, 149, 319
BstMAI GTCTC 2 cut(s) 72, 163
BstMBI GATC 3 cut(s) 87, 146, 316
BstMWI GCNNNNNNNGC 3 cut(s) 29, 344, 410
BstNSI RCATGY 1 cut(s) 131
BstPI GGTNACC 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 56
BstX2I RGATCY 3 cut(s) 87, 146, 316
BstYI RGATCY 3 cut(s) 87, 146, 316
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 406
BveI ACCTGC 1 cut(s) 84
CfoI GCGC 2 cut(s) 121, 413
CviAII CATG 1 cut(s) 128
CviJI RGCY 4 cut(s) 32, 68, 223, 338
CviKI_1 RGCY 4 cut(s) 32, 68, 223, 338
DdeI CTNAG 4 cut(s) 143, 156, 209, 234
DpnI GATC 3 cut(s) 89, 148, 318
DpnII GATC 3 cut(s) 87, 146, 316
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 371
Eco91I GGTNACC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 131
FaiI YATR 6 cut(s) 129, 184, 245, 341, 345, 371
FatI CATG 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 1 cut(s) 45
GlaI GCGC 2 cut(s) 120, 412
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 68
HhaI GCGC 2 cut(s) 121, 413
Hin1II CATG 1 cut(s) 131
Hin6I GCGC 2 cut(s) 119, 411
HinP1I GCGC 2 cut(s) 119, 411
HinfI GANTC 5 cut(s) 100, 136, 171, 239, 420
HphI GGTGA 2 cut(s) 131, 391
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 5 cut(s) 146, 235, 309, 351, 361
Hpy188III TCNNGA 2 cut(s) 201, 283
Hpy8I GTNNAC 1 cut(s) 269
HpyCH4V TGCA 2 cut(s) 44, 93
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 344, 410
HpyF3I CTNAG 4 cut(s) 143, 156, 209, 234
Hsp92II CATG 1 cut(s) 131
HspAI GCGC 2 cut(s) 119, 411
Kzo9I GATC 3 cut(s) 87, 146, 316
LpnPI CCDG 5 cut(s) 13, 79, 143, 179, 333
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 379
MalI GATC 3 cut(s) 89, 148, 318
MboI GATC 3 cut(s) 87, 146, 316
MboII GAAGA 2 cut(s) 168, 364
MflI RGATCY 3 cut(s) 87, 146, 316
MlyI GAGTC 3 cut(s) 109, 130, 165
MnlI CCTC 9 cut(s) 58, 152, 190, 229, 240, 367, 370, 379, 382
MwoI GCNNNNNNNGC 3 cut(s) 29, 344, 410
NdeII GATC 3 cut(s) 87, 146, 316
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 84
PceI AGGCCT 1 cut(s) 68
PfeI GAWTC 2 cut(s) 239, 420
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 3 cut(s) 108, 130, 165
PpsI GAGTC 3 cut(s) 108, 130, 165
PspEI GGTNACC 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 318
PstI CTGCAG 1 cut(s) 95
PsuI RGATCY 3 cut(s) 87, 146, 316
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 87, 146, 316
SchI GAGTC 3 cut(s) 109, 130, 165
SetI ASST 5 cut(s) 98, 144, 292, 340, 381
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 91
SseBI AGGCCT 1 cut(s) 68
StuI AGGCCT 1 cut(s) 68
StyI CCWWGG 1 cut(s) 82
TaqI TCGA 1 cut(s) 103
TaqII GACCGA 1 cut(s) 398
TfiI GAWTC 2 cut(s) 239, 420
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 379
XceI RCATGY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.