Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018552

Physical Location & Seq

Genomic Coordinates Forward (+)

18834201 .. 18835052

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGATTTGGAAGTTTTGGGGCATGAGTTGCAGTTCATTCAGATTGGGGATCCTATTTGGATTGACGGAGCTGTGTATGCGCTGAAGAAGTCGGATGGGATTGTGGAGGAGGTGACTAAGGAGGAGTTGTTGGCTGTAATGGCGCAAGCGGATTCTACCGGCATGTTTATATGTCCTTACACCGGTGTGGCGCCGACGGCATTGGTTAAGCTCGGGATTTGGCCTGCCGGTTTGCTAACCCACTGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004795 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008144 GO:0016829 GO:0016835 GO:0016838 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0044424 GO:0044464 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00750 ko01100 ko01110 ko01120 ko01230 map00260 map00750 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

83

Amino Acids

9.07

Weight (kDa)

4.37

Isoelectric Point (pI)

21.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018552)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356311 RchiOBHm_Chr4g0415221
rosa_laevigata	RLG00000009747
rosa_multiflora	Rmu_co8170908.1_g000001 Rmu_co8374445.1_g000001
rosa_roxburghii	Rroxscaffold_3G00228730 Rroxscaffold_5G00347460
rosa_rugosa	Rorug03G0221500.1
rosa_samantha	Rh2AG556000 Rh3DG267000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	2 cut(s)	44, 57
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgeI	ACCGGT	1 cut(s)	182
AleI	CACNNNNGTG	1 cut(s)	185
AluBI	AGCT	2 cut(s)	71, 211
AluI	AGCT	2 cut(s)	71, 211
AlwI	GGATC	2 cut(s)	44, 57
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	221
AsiGI	ACCGGT	1 cut(s)	182
AspLEI	GCGC	3 cut(s)	82, 145, 193
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	190
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	250
BfoI	RGCGCY	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	51, 192
BsaHI	GRCGYC	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	3 cut(s)	158, 182, 227
Bse1I	ACTGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	122, 137
BshFI	GGCC	1 cut(s)	223
BshNI	GGYRCC	1 cut(s)	190
BshTI	ACCGGT	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	3 cut(s)	159, 183, 228
BslI	CCNNNNNNNGG	1 cut(s)	182
BsnI	GGCC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	51, 192
BspPI	GGATC	2 cut(s)	44, 57
BspT107I	GGYRCC	1 cut(s)	190
BsrFI	RCCGGY	3 cut(s)	158, 182, 227
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	3 cut(s)	158, 182, 227
BssMI	GATC	1 cut(s)	49
BssNI	GRCGYC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	147, 225
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	3 cut(s)	82, 145, 193
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 77, 140, 197
BstNSI	RCATGY	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	147, 225
CfoI	GCGC	3 cut(s)	82, 145, 193
Cfr10I	RCCGGY	3 cut(s)	158, 182, 227
CspAI	ACCGGT	1 cut(s)	182
CviAII	CATG	2 cut(s)	23, 163
CviJI	RGCY	4 cut(s)	71, 134, 211, 223
CviKI_1	RGCY	4 cut(s)	71, 134, 211, 223
DdeI	CTNAG	1 cut(s)	117
DinI	GGCGCC	1 cut(s)	192
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	212
EgeI	GGCGCC	1 cut(s)	192
EheI	GGCGCC	1 cut(s)	192
FaeI	CATG	2 cut(s)	26, 166
FaiI	YATR	5 cut(s)	24, 78, 164, 170, 172
FatI	CATG	2 cut(s)	22, 162
FokI	GGATG	1 cut(s)	107
FspBI	CTAG	1 cut(s)	250
GlaI	GCGC	3 cut(s)	81, 144, 192
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	3 cut(s)	159, 183, 228
HhaI	GCGC	3 cut(s)	82, 145, 193
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	26, 166
Hin6I	GCGC	3 cut(s)	80, 143, 191
HinP1I	GCGC	3 cut(s)	80, 143, 191
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	3 cut(s)	159, 183, 228
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	42, 94
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 77, 140, 197
HpyF3I	CTNAG	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	26, 166
HspAI	GCGC	3 cut(s)	80, 143, 191
KasI	GGCGCC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	172, 196, 229, 237, 241
MaeI	CTAG	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	49
Mly113I	GGCGCC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	3 cut(s)	100, 103, 115
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	3 cut(s)	159, 183, 228
MwoI	GCNNNNNNNGC	4 cut(s)	28, 77, 140, 197
NarI	GGCGCC	1 cut(s)	191
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	26, 166
NlaIV	GGNNCC	2 cut(s)	51, 192
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	166
OliI	CACNNNNGTG	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	152
PinAI	ACCGGT	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	51, 192
PsuI	RGATCY	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	49
SetI	ASST	3 cut(s)	73, 114, 213
SfoI	GGCGCC	1 cut(s)	192
SgeI	CNNG	9 cut(s)	35, 158, 171, 175, 195, 224, 226, 236, 240
SgrAI	CRCCGGYG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	185
SsiI	CCGC	1 cut(s)	149
SspDI	GGCGCC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	1 cut(s)	248
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.