Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8375437.1

Orthogroup ID

OG0006251

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 995

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8375437.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 397 bp

atgctgacaaaccctgttaacctggaggttgccctgcatggccaaatcaatcaattgacttgtattcccctgagaactgttgaacctgtgaccaaccaatccatgtttaatacttttgagaaatctgtcatggagcaaactcgtgctaatgagctgaagctttgggagcttggtctggcaatgaaaaagttgtcgttgaaagaggaacaagtggctctaggtcatgattcaaatcatctggagagatcaaaaatagctatgggcacatcaaaggcatccttcaaagctgaaaaatttaagactcaattagaagacacaagacactctgagctccttaggacgtgcattgactgtctagttgctgggttattggtcatggctgcagccctgtcttatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0002376 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009648 GO:0009653 GO:0009743 GO:0009756 GO:0009791 GO:0009814 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010150 GO:0010182 GO:0010228 GO:0016020 GO:0016043 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048468 GO:0048573 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071840 GO:0090558 GO:0090626 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.79

Weight (kDa)

6.9

Isoelectric Point (pI)

25.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64930
fragaria_vesca	FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g24620
malus_domestica	MD01G1017700.v1.1
prunus_persica	Prupe.6G175000_v2.0.a1 Prupe.6G175000_v2.0.a1
pyrus_communis	pycom01g04810
rosa_chinensis	RchiOBHm_Chr2g0116221
rosa_laevigata	RLG00000018248
rosa_multiflora	Rmu_co8375437.1_g000001 Rmu_sc0003499.1_g000011 Rmu_sc0030267.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127420
rosa_rugosa	Rorug02G0204800 Rorug02G0204900 Rorug02G0204900
rosa_samantha	Rh2AG260500 Rh2BG271600 Rh2CG266700 Rh2DG268700
rosa_wichuraiana	Rw2G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	83, 199, 231, 283
AjiI	CACGTC	1 cut(s)	342
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	6 cut(s)	154, 160, 169, 257, 287, 331
AluI	AGCT	6 cut(s)	154, 160, 169, 257, 287, 331
Alw21I	GWGCWC	1 cut(s)	333
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	380, 383
ApoI	RAATTY	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	23
BfaI	CTAG	2 cut(s)	218, 356
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	381, 384
BlsI	GCNGC	2 cut(s)	382, 385
Bme1390I	CCNGG	1 cut(s)	23
BmgBI	CACGTC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	2 cut(s)	44, 260
BsaBI	GATNNNNATC	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	275
BseJI	GATNNNNATC	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	62, 318
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	367
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	266, 333
Bsp143I	GATC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	63, 319
BspHI	TCATGA	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	186
BssMI	GATC	1 cut(s)	245
BssSI	CACGAG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	79, 353
BstDEI	CTNAG	3 cut(s)	71, 327, 335
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	275
CciI	TCATGA	1 cut(s)	223
CviAII	CATG	5 cut(s)	38, 103, 130, 224, 376
DdeI	CTNAG	3 cut(s)	71, 327, 335
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	5 cut(s)	41, 106, 133, 227, 379
FaiI	YATR	7 cut(s)	39, 104, 131, 225, 260, 377, 396
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	5 cut(s)	37, 102, 129, 223, 375
Fnu4HI	GCNGC	2 cut(s)	381, 384
FokI	GGATG	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	381, 384
FspBI	CTAG	2 cut(s)	218, 356
GluI	GCNGC	2 cut(s)	381, 384
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	2 cut(s)	44, 260
HaeIII	GGCC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	41, 106, 133, 227, 379
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	227, 301
HpaI	GTTAAC	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	224, 239
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	2 cut(s)	79, 353
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	37, 345, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpyF3I	CTNAG	3 cut(s)	71, 327, 335
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	5 cut(s)	41, 106, 133, 227, 379
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	3 cut(s)	133, 166, 336
LpnPI	CCDG	9 cut(s)	8, 27, 35, 47, 83, 99, 161, 224, 348
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	2 cut(s)	218, 356
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	1 cut(s)	247
MboI	GATC	1 cut(s)	245
MboII	GAAGA	1 cut(s)	323
MfeI	CAATTG	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	266, 333
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	3 cut(s)	53, 293, 305
MluNI	TGGCCA	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	2 cut(s)	19, 196
Mox20I	TGGCCA	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	3 cut(s)	18, 108, 297
Msp20I	TGGCCA	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	166
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	5 cut(s)	41, 106, 133, 227, 379
NmuCI	GTSAC	1 cut(s)	88
PagI	TCATGA	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	382, 385
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	18, 108, 297
SatI	GCNGC	2 cut(s)	381, 384
Sau3AI	GATC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	266, 333
SfaNI	GCATC	1 cut(s)	284
SfcI	CTRYAG	1 cut(s)	381
Sse9I	AATT	3 cut(s)	53, 293, 305
SspMI	CTAG	2 cut(s)	218, 356
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	79, 353
TaiI	ACGT	1 cut(s)	344
TasI	AATT	3 cut(s)	53, 293, 305
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	18, 108, 297
Tru9I	TTAA	3 cut(s)	18, 108, 297
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	2 cut(s)	380, 383
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	197
XapI	RAATTY	1 cut(s)	293
XspI	CTAG	2 cut(s)	218, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.