Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030267.1

Orthogroup ID

OG0006251

Physical Location & Seq

Genomic Coordinates Forward (+)

4 .. 2211

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030267.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1078 bp

atgtttgattgttttatccagaactttgaacaatcatttgggagcaccttaagaactctaaagtcgatcaaagaatcatccgaagataacacaggatatctctccagcaagcaaaacatggaagaacatagtctgcgtgtcactcatgacgaacaagatgactgtctaagaggggaagcttgtagaagcagttccggtacagaagattatcactcaaaagaagtgacccacactactgcaactgagggtcgattaaattatagagatcaattgcatcagaatatgctgacaaaccctgttaacctggaggttgccctgcatggccaaatcaatcaattgacttgtattcccctgagaactgttgaacctgtgaccaaccaatccatgtttaatacttttgagaaatctgtcatggagcaaactcgtgctaatgagctgaagatttgggagcttggtctggcaatgaaaaagttgtcgttgaaagaggaacaagtggctctaggtcatgattcaaatcatctggagagatcaaaaatagctatgggcacatcaaaggcatccttcaaagctgaaaaatttaagactcaattagaagacacaagacactctgagctccttaggacgtgcattgactgtctagttgctgggttattggtcatggctgcagccctgtcttatggtacttacatatattcatacagaagaattatggaagccactgcatcatgtacaccttcaaaggattcaaagtcttggtggaatcccatggcatctgtcaattcgggcgttcaagttctaaggtgtcaagctgaggtagtgagtcggatggtgtttggtttcttcatgatttttgcaattgcttatttgatcgtccagcgctcggcagtttcgaaacagacaatgccagttactttcatagtcttgctgttgggaattgtctgtggttgggccggcaagttttgtgtagacacattgggagggagtggatatcactggattatatattgggagactctatgcctcgtgcatttcttctgcaatgtttttacatcagttttgttccatatcctgcatggac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0002376 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009648 GO:0009653 GO:0009743 GO:0009756 GO:0009791 GO:0009814 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010150 GO:0010182 GO:0010228 GO:0016020 GO:0016043 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048468 GO:0048573 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071840 GO:0090558 GO:0090626 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

40.61

Weight (kDa)

6.5

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64930
fragaria_vesca	FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g24620
malus_domestica	MD01G1017700.v1.1
prunus_persica	Prupe.6G175000_v2.0.a1 Prupe.6G175000_v2.0.a1
pyrus_communis	pycom01g04810
rosa_chinensis	RchiOBHm_Chr2g0116221
rosa_laevigata	RLG00000018248
rosa_multiflora	Rmu_co8375437.1_g000001 Rmu_sc0003499.1_g000011 Rmu_sc0030267.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127420
rosa_rugosa	Rorug02G0204800 Rorug02G0204900 Rorug02G0204900
rosa_samantha	Rh2AG260500 Rh2BG271600 Rh2CG266700 Rh2DG268700
rosa_wichuraiana	Rw2G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	966
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	1 cut(s)	458
AfaI	GTAC	3 cut(s)	199, 682, 730
AfeI	AGCGCT	1 cut(s)	878
AfiI	CCNNNNNNNGG	1 cut(s)	880
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	8 cut(s)	29, 365, 481, 513, 565, 738, 747, 791
AjiI	CACGTC	1 cut(s)	624
AjnI	CCWGG	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	7 cut(s)	179, 436, 451, 539, 569, 613, 809
AluI	AGCT	7 cut(s)	179, 436, 451, 539, 569, 613, 809
Alw21I	GWGCWC	2 cut(s)	47, 615
Alw26I	GTCTC	1 cut(s)	1004
Aor51HI	AGCGCT	1 cut(s)	878
AoxI	GGCC	2 cut(s)	322, 948
ApeKI	GCWGC	2 cut(s)	662, 665
ApoI	RAATTY	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	879
AspS9I	GGNCC	1 cut(s)	948
AsuII	TTCGAA	1 cut(s)	890
AxyI	CCTNAGG	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	615
BauI	CACGAG	2 cut(s)	423, 1022
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	2 cut(s)	47, 615
BbvCI	CCTCAGC	1 cut(s)	810
BbvI	GCAGC	2 cut(s)	649, 677
BccI	CCATC	1 cut(s)	820
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	1004
BfaI	CTAG	2 cut(s)	500, 638
BfmI	CTRYAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	880
BfrI	CTTAAG	1 cut(s)	49
BisI	GCNGC	2 cut(s)	663, 666
BlsI	GCNGC	2 cut(s)	664, 667
Bme1390I	CCNGG	1 cut(s)	305
BmgBI	CACGTC	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	948
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	4 cut(s)	283, 566, 731, 779
BpiI	GAAGAC	1 cut(s)	600
BpmI	CTGGAG	3 cut(s)	88, 326, 542
Bpu10I	CCTNAGC	1 cut(s)	810
Bpu14I	TTCGAA	1 cut(s)	890
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	880
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	2 cut(s)	905, 998
Bse21I	CCTNAGG	1 cut(s)	617
Bse3DI	GCAATG	2 cut(s)	468, 1045
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	765
BseGI	GGATG	3 cut(s)	77, 557, 831
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	880
BseMI	GCAATG	2 cut(s)	468, 1045
BseMII	CTCAG	4 cut(s)	234, 344, 600, 801
BseNI	ACTGG	2 cut(s)	905, 998
BseSI	GKGCMC	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	649, 677
BseYI	CCCAGC	1 cut(s)	644
BshFI	GGCC	2 cut(s)	324, 950
BsiHKAI	GWGCWC	2 cut(s)	47, 615
BsiSI	CCGG	2 cut(s)	195, 951
BslI	CCNNNNNNNGG	1 cut(s)	880
BsmAI	GTCTC	1 cut(s)	1004
BsnI	GGCC	2 cut(s)	324, 950
Bsp119I	TTCGAA	1 cut(s)	890
Bsp1286I	GDGCHC	3 cut(s)	47, 548, 615
Bsp1407I	TGTACA	1 cut(s)	728
Bsp143I	GATC	4 cut(s)	66, 265, 527, 867
Bsp19I	CCATGG	1 cut(s)	765
BspANI	GGCC	2 cut(s)	324, 950
BspCNI	CTCAG	4 cut(s)	235, 345, 601, 802
BspHI	TCATGA	3 cut(s)	145, 505, 843
BspMAI	CTGCAG	1 cut(s)	667
BspT104I	TTCGAA	1 cut(s)	890
BspTI	CTTAAG	1 cut(s)	49
BsrDI	GCAATG	2 cut(s)	468, 1045
BsrFI	RCCGGY	1 cut(s)	950
BsrGI	TGTACA	1 cut(s)	728
BsrI	ACTGG	2 cut(s)	905, 998
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	4 cut(s)	66, 265, 527, 867
BssSI	CACGAG	2 cut(s)	423, 1022
BssT1I	CCWWGG	1 cut(s)	765
Bst2BI	CACGAG	2 cut(s)	423, 1022
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	3 cut(s)	164, 361, 635
BstAFI	CTTAAG	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	728
BstBI	TTCGAA	1 cut(s)	890
BstC8I	GCNNGC	2 cut(s)	110, 952
BstDEI	CTNAG	7 cut(s)	167, 243, 353, 609, 617, 797, 810
BstDSI	CCRYGG	1 cut(s)	765
BstF5I	GGATG	3 cut(s)	77, 557, 831
BstH2I	RGCGCY	1 cut(s)	880
BstHHI	GCGC	1 cut(s)	879
BstKTI	GATC	4 cut(s)	69, 268, 530, 870
BstMAI	GTCTC	1 cut(s)	1004
BstMBI	GATC	4 cut(s)	66, 265, 527, 867
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	649, 677
BstV2I	GAAGAC	1 cut(s)	600
Bsu36I	CCTNAGG	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	324, 950
BtgI	CCRYGG	1 cut(s)	765
BtrI	CACGTC	1 cut(s)	624
BtsCI	GGATG	3 cut(s)	77, 557, 831
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	2 cut(s)	717, 991
Cac8I	GCNNGC	2 cut(s)	110, 952
CciI	TCATGA	3 cut(s)	145, 505, 843
CfoI	GCGC	1 cut(s)	879
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	1 cut(s)	948
Csp6I	GTAC	3 cut(s)	198, 681, 729
CviQI	GTAC	3 cut(s)	198, 681, 729
DdeI	CTNAG	7 cut(s)	167, 243, 353, 609, 617, 797, 810
DpnI	GATC	4 cut(s)	68, 267, 529, 869
DpnII	GATC	4 cut(s)	66, 265, 527, 867
EaeI	YGGCCR	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	765
Eco24I	GRGCYC	1 cut(s)	615
Eco32I	GATATC	2 cut(s)	98, 989
Eco47III	AGCGCT	1 cut(s)	878
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	303
EcoRV	GATATC	2 cut(s)	98, 989
EcoT14I	CCWWGG	1 cut(s)	765
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	765
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	2 cut(s)	663, 666
FokI	GGATG	3 cut(s)	64, 544, 838
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	2 cut(s)	663, 666
FspBI	CTAG	2 cut(s)	500, 638
GlaI	GCGC	1 cut(s)	878
GluI	GCNGC	2 cut(s)	663, 666
GsaI	CCCAGC	1 cut(s)	648
GsuI	CTGGAG	3 cut(s)	88, 326, 542
HaeII	RGCGCY	1 cut(s)	880
HaeIII	GGCC	2 cut(s)	324, 950
HapII	CCGG	2 cut(s)	195, 951
HhaI	GCGC	1 cut(s)	879
Hin6I	GCGC	1 cut(s)	877
HinP1I	GCGC	1 cut(s)	877
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	7 cut(s)	74, 509, 583, 743, 760, 820, 1012
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	2 cut(s)	195, 951
Hpy166II	GTNNAC	3 cut(s)	301, 731, 967
Hpy188I	TCNGA	4 cut(s)	82, 279, 610, 825
Hpy188III	TCNNGA	5 cut(s)	19, 146, 506, 521, 844
Hpy8I	GTNNAC	3 cut(s)	301, 731, 967
HpyAV	CCTTC	2 cut(s)	571, 744
HpyCH4III	ACNGT	3 cut(s)	164, 361, 635
HpyCH4IV	ACGT	1 cut(s)	623
HpyF3I	CTNAG	7 cut(s)	167, 243, 353, 609, 617, 797, 810
HpySE526I	ACGT	1 cut(s)	623
HspAI	GCGC	1 cut(s)	877
KroI	GCCGGC	1 cut(s)	950
KroNI	GCCGGC	1 cut(s)	952
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	66, 265, 527, 867
LmnI	GCTCC	4 cut(s)	42, 415, 448, 618
Lsp1109I	GCAGC	2 cut(s)	649, 677
LweI	GCATC	4 cut(s)	283, 566, 731, 779
MaeI	CTAG	2 cut(s)	500, 638
MaeII	ACGT	1 cut(s)	623
MaeIII	GTNAC	4 cut(s)	139, 223, 370, 907
MalI	GATC	4 cut(s)	68, 267, 529, 869
MboI	GATC	4 cut(s)	66, 265, 527, 867
MboII	GAAGA	8 cut(s)	95, 134, 215, 451, 605, 714, 832, 1024
MfeI	CAATTG	3 cut(s)	269, 335, 855
MhlI	GDGCHC	3 cut(s)	47, 548, 615
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	9 cut(s)	256, 269, 335, 575, 587, 705, 778, 855, 933
MluNI	TGGCCA	1 cut(s)	324
MlyI	GAGTC	3 cut(s)	577, 829, 1006
MmeI	TCCRAC	1 cut(s)	803
MnlI	CCTC	7 cut(s)	164, 238, 301, 478, 805, 971, 1031
Mox20I	TGGCCA	1 cut(s)	324
MroNI	GCCGGC	1 cut(s)	950
MroXI	GAANNNNTTC	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	5 cut(s)	50, 254, 300, 390, 579
Msp20I	TGGCCA	1 cut(s)	324
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	2 cut(s)	195, 951
MspR9I	CCNGG	1 cut(s)	305
MunI	CAATTG	3 cut(s)	269, 335, 855
MvaI	CCWGG	1 cut(s)	305
NaeI	GCCGGC	1 cut(s)	952
NcoI	CCATGG	1 cut(s)	765
NdeII	GATC	4 cut(s)	66, 265, 527, 867
NgoMIV	GCCGGC	1 cut(s)	950
NmeAIII	GCCGAG	1 cut(s)	860
NmuCI	GTSAC	3 cut(s)	139, 223, 370
NspV	TTCGAA	1 cut(s)	890
PagI	TCATGA	3 cut(s)	145, 505, 843
PcsI	WCGNNNNNNNCGW	1 cut(s)	887
PdiI	GCCGGC	1 cut(s)	952
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	4 cut(s)	74, 509, 743, 760
PkrI	GCNGC	2 cut(s)	664, 667
PleI	GAGTC	3 cut(s)	577, 828, 1006
PpsI	GAGTC	3 cut(s)	577, 828, 1006
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	948
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PstI	CTGCAG	1 cut(s)	667
RsaI	GTAC	3 cut(s)	199, 682, 730
RsaNI	GTAC	3 cut(s)	198, 681, 729
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	5 cut(s)	50, 254, 300, 390, 579
SatI	GCNGC	2 cut(s)	663, 666
Sau3AI	GATC	4 cut(s)	66, 265, 527, 867
Sau96I	GGNCC	1 cut(s)	948
SchI	GAGTC	3 cut(s)	577, 829, 1006
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	3 cut(s)	47, 548, 615
SfaNI	GCATC	4 cut(s)	283, 566, 731, 779
SfcI	CTRYAG	1 cut(s)	663
SfuI	TTCGAA	1 cut(s)	890
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	9 cut(s)	256, 269, 335, 575, 587, 705, 778, 855, 933
SspMI	CTAG	2 cut(s)	500, 638
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	3 cut(s)	164, 361, 635
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	3 cut(s)	65, 250, 890
TasI	AATT	9 cut(s)	256, 269, 335, 575, 587, 705, 778, 855, 933
TatI	WGTACW	1 cut(s)	728
TfiI	GAWTC	4 cut(s)	74, 509, 743, 760
Tru1I	TTAA	5 cut(s)	50, 254, 300, 390, 579
Tru9I	TTAA	5 cut(s)	50, 254, 300, 390, 579
TscAI	CASTG	2 cut(s)	724, 998
TseFI	GTSAC	3 cut(s)	139, 223, 370
TseI	GCWGC	2 cut(s)	662, 665
Tsp45I	GTSAC	3 cut(s)	139, 223, 370
TspDTI	ATGAA	4 cut(s)	479, 684, 832, 904
TspRI	CASTG	2 cut(s)	724, 998
Vha464I	CTTAAG	1 cut(s)	49
XapI	RAATTY	1 cut(s)	575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1070
XmiI	GTMKAC	1 cut(s)	966
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	2 cut(s)	500, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.