Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006251

Physical Location & Seq

Genomic Coordinates Reverse (-)

62853817 .. 62859597

Gene Structure 5781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00127420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTGTGACACCTTTGAGAAATCTGTCATGGAGCAAACTCGTGCTAATGAGCTGAAGATTTGGGAGCTTGGTCTGGCAATGAAGAAGTTGTCGTTGAAAGAGGAACAGGTTGCTCTAGGTCATGATTCAAATCATCTGGAGAGATCAAAAATAGCTATGGGCAGATCAAAGGCATCCTTCAAGGCTGAAAAATTTAAGACTCAATTGGAAGACACAAGACACTCTGAGCTACTTAGAATGTGCATTGACTGTCTAGTTGCTGGATTATTTGTCATGGCTGCAGCCCTATTTTATGGTACGTATGTATATTCATACAGAAGAATTACGGAGGCCACTGCATCTTGTACACCTTCAAAGGATTCGAAGTCTTGGTGGAATCCCATGGCATCTGTCAATTCGGGCTTTCAAGTTGTAAGATGTCAAGCTGAGGTAGTGAGTCGGATGGTGTTTGGTTTCTTCATGATTTTTGCAGTGGCTTATTTGATCCTCCAGCGCTCAGCAGTTTCGAAACAGACAATGCCAGTTACTTTCATAGTCTTGCTGTTGGGAATTGCCTGTGGTTGGGCGGGCAAGTTTTGTGTAGACACATTGGGAGGGAGTGGATATCACTGGCTTGTATATTGGGAGAGTCTATGCCTCGTGCATTTCTTCTGCAATGTCTTTACATCAGTTTTGTTCCATATCCTGTATGGACCCATTGATGTGTCTCCAGGGACAAAAGGAAATTCAATATTTCCTTACTGGATACGCAGATTGGTGTTCTACGGCATTACATTCCTGTTTCTGCCATTGCTTTGTGGCCTTTTGCCTTTTGCGAGCCTTGCTGAATGGAAGCACCATTTCTTGCTGCTGGTTGCTGATGTTGATTACTGGGTTGGAACAGGAGGTATCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0002376 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009627 GO:0009628 GO:0009648 GO:0009653 GO:0009743 GO:0009756 GO:0009791 GO:0009814 GO:0009888 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010150 GO:0010182 GO:0010228 GO:0016020 GO:0016043 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048366 GO:0048367 GO:0048468 GO:0048573 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071322 GO:0071840 GO:0090558 GO:0090626 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.75

Weight (kDa)

8.62

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006251)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64930
fragaria_vesca	FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g22140 FvH4_1g24620
malus_domestica	MD01G1017700.v1.1
prunus_persica	Prupe.6G175000_v2.0.a1 Prupe.6G175000_v2.0.a1
pyrus_communis	pycom01g04810
rosa_chinensis	RchiOBHm_Chr2g0116221
rosa_laevigata	RLG00000018248
rosa_multiflora	Rmu_co8375437.1_g000001 Rmu_sc0003499.1_g000011 Rmu_sc0030267.1_g000001
rosa_roxburghii	Rroxscaffold_2G00127420
rosa_rugosa	Rorug02G0204800 Rorug02G0204900 Rorug02G0204900
rosa_samantha	Rh2AG260500 Rh2BG271600 Rh2CG266700 Rh2DG268700
rosa_wichuraiana	Rw2G020420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	2 cut(s)	191, 724
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	298, 346
AfeI	AGCGCT	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	6 cut(s)	97, 129, 181, 354, 407, 729
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	5 cut(s)	52, 67, 155, 229, 425
AluI	AGCT	5 cut(s)	52, 67, 155, 229, 425
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	478
Aor51HI	AGCGCT	1 cut(s)	494
AoxI	GGCC	2 cut(s)	330, 799
ApeKI	GCWGC	3 cut(s)	278, 281, 847
ApoI	RAATTY	2 cut(s)	191, 724
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	692
AsuII	TTCGAA	2 cut(s)	362, 506
AvaII	GGWCC	1 cut(s)	692
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BauI	CACGAG	2 cut(s)	39, 638
BbsI	GAAGAC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	265, 293, 834
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	1 cut(s)	781
BciT130I	CCWGG	1 cut(s)	711
BciVI	GTATCC	1 cut(s)	738
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	2 cut(s)	116, 254
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	496
BfuI	GTATCC	1 cut(s)	738
BisI	GCNGC	3 cut(s)	279, 282, 848
BlpI	GCTNAGC	1 cut(s)	496
BlsI	GCNGC	3 cut(s)	280, 283, 849
Bme1390I	CCNGG	1 cut(s)	711
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	1 cut(s)	694
BmrFI	CCNGG	1 cut(s)	711
BmrI	ACTGGG	1 cut(s)	880
BmsI	GCATC	3 cut(s)	182, 347, 395
BmuI	ACTGGG	1 cut(s)	880
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	3 cut(s)	158, 473, 693
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	496
Bpu14I	TTCGAA	2 cut(s)	362, 506
BsaAI	YACGTR	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	381, 710
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse1I	ACTGG	4 cut(s)	521, 614, 746, 875
Bse3DI	GCAATG	3 cut(s)	84, 661, 788
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	381, 710
BseGI	GGATG	2 cut(s)	173, 447
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMI	GCAATG	3 cut(s)	84, 661, 788
BseMII	CTCAG	3 cut(s)	216, 417, 510
BseNI	ACTGG	4 cut(s)	521, 614, 746, 875
BseXI	GCAGC	3 cut(s)	265, 293, 834
BshFI	GGCC	2 cut(s)	332, 801
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	2 cut(s)	332, 801
Bsp119I	TTCGAA	2 cut(s)	362, 506
Bsp1407I	TGTACA	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	143, 164, 483
Bsp1720I	GCTNAGC	1 cut(s)	496
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	2 cut(s)	332, 801
BspCNI	CTCAG	3 cut(s)	217, 418, 509
BspHI	TCATGA	2 cut(s)	121, 459
BspLI	GGNNCC	1 cut(s)	694
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	478
BspT104I	TTCGAA	2 cut(s)	362, 506
BsrDI	GCAATG	3 cut(s)	84, 661, 788
BsrGI	TGTACA	1 cut(s)	344
BsrI	ACTGG	4 cut(s)	521, 614, 746, 875
BssECI	CCNNGG	2 cut(s)	381, 710
BssMI	GATC	3 cut(s)	143, 164, 483
BssSI	CACGAG	2 cut(s)	39, 638
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	2 cut(s)	39, 638
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	300
BstBI	TTCGAA	2 cut(s)	362, 506
BstC8I	GCNNGC	2 cut(s)	568, 817
BstDEI	CTNAG	4 cut(s)	225, 233, 426, 496
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	173, 447
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	3 cut(s)	146, 167, 486
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	3 cut(s)	143, 164, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	821
BstNI	CCWGG	1 cut(s)	711
BstSCI	CCNGG	1 cut(s)	709
BstSFI	CTRYAG	1 cut(s)	279
BstSNI	TACGTA	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	265, 293, 834
BstV2I	GAAGAC	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	2 cut(s)	332, 801
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	173, 447
BtsI	GCAGTG	2 cut(s)	333, 477
BtsIMutI	CAGTG	3 cut(s)	333, 477, 607
Cac8I	GCNNGC	2 cut(s)	568, 817
CciI	TCATGA	2 cut(s)	121, 459
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	297, 345
CviAII	CATG	5 cut(s)	28, 122, 274, 382, 460
CviQI	GTAC	2 cut(s)	297, 345
DdeI	CTNAG	4 cut(s)	225, 233, 426, 496
DpnI	GATC	3 cut(s)	145, 166, 485
DpnII	GATC	3 cut(s)	143, 164, 483
Eco105I	TACGTA	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	692
Eco47III	AGCGCT	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	709
EcoRV	GATATC	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	5 cut(s)	31, 125, 277, 385, 463
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	5 cut(s)	27, 121, 273, 381, 459
FauI	CCCGC	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	279, 282, 848
FokI	GGATG	2 cut(s)	160, 454
Fsp4HI	GCNGC	3 cut(s)	279, 282, 848
FspBI	CTAG	2 cut(s)	116, 254
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	3 cut(s)	279, 282, 848
GsuI	CTGGAG	3 cut(s)	158, 473, 693
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	332, 801
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	5 cut(s)	31, 125, 277, 385, 463
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	6 cut(s)	125, 199, 359, 376, 436, 628
Hpy166II	GTNNAC	2 cut(s)	347, 583
Hpy188I	TCNGA	3 cut(s)	226, 441, 896
Hpy188III	TCNNGA	3 cut(s)	122, 137, 460
Hpy8I	GTNNAC	2 cut(s)	347, 583
HpyAV	CCTTC	2 cut(s)	187, 360
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	6 cut(s)	243, 281, 338, 470, 643, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	821
HpyF3I	CTNAG	4 cut(s)	225, 233, 426, 496
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	5 cut(s)	31, 125, 277, 385, 463
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	143, 164, 483
LmnI	GCTCC	2 cut(s)	31, 64
Lsp1109I	GCAGC	3 cut(s)	265, 293, 834
LweI	GCATC	3 cut(s)	182, 347, 395
MaeI	CTAG	2 cut(s)	116, 254
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	5, 523
MalI	GATC	3 cut(s)	145, 166, 485
MboI	GATC	3 cut(s)	143, 164, 483
MboII	GAAGA	7 cut(s)	67, 94, 221, 330, 448, 640, 883
MfeI	CAATTG	1 cut(s)	203
MluCI	AATT	6 cut(s)	191, 203, 321, 394, 549, 724
MlyI	GAGTC	3 cut(s)	193, 445, 637
MmeI	TCCRAC	2 cut(s)	419, 856
MnlI	CCTC	7 cut(s)	94, 322, 421, 497, 587, 647, 878
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	701
MspR9I	CCNGG	1 cut(s)	711
MunI	CAATTG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	3 cut(s)	143, 164, 483
NlaIII	CATG	5 cut(s)	31, 125, 277, 385, 463
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	1 cut(s)	5
NspV	TTCGAA	2 cut(s)	362, 506
PagI	TCATGA	2 cut(s)	121, 459
PfeI	GAWTC	3 cut(s)	125, 359, 376
PkrI	GCNGC	3 cut(s)	280, 283, 849
PleI	GAGTC	3 cut(s)	193, 444, 636
PpsI	GAGTC	3 cut(s)	193, 444, 636
Ppu21I	YACGTR	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	283
RsaI	GTAC	2 cut(s)	298, 346
RsaNI	GTAC	2 cut(s)	297, 345
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	3 cut(s)	279, 282, 848
Sau3AI	GATC	3 cut(s)	143, 164, 483
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	3 cut(s)	193, 445, 637
ScrFI	CCNGG	1 cut(s)	711
SfaNI	GCATC	3 cut(s)	182, 347, 395
SfcI	CTRYAG	1 cut(s)	279
SfuI	TTCGAA	2 cut(s)	362, 506
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	701
SnaBI	TACGTA	1 cut(s)	300
Sse9I	AATT	6 cut(s)	191, 203, 321, 394, 549, 724
SsiI	CCGC	1 cut(s)	566
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	2 cut(s)	116, 254
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	362, 506
TasI	AATT	6 cut(s)	191, 203, 321, 394, 549, 724
TatI	WGTACW	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	125, 359, 376
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	3 cut(s)	340, 477, 614
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	278, 281, 847
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	4 cut(s)	95, 300, 448, 520
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	3 cut(s)	340, 477, 614
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	2 cut(s)	191, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	2 cut(s)	116, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.