Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8392117.1

Orthogroup ID

OG0012637

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1224

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8392117.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 434 bp

gactggcggcttgagtgtctcattggctggaccagatggtcgtgtaattggtggtggcattgctggtatgctaatagctgcaagccctatccaaattgtggttggaagctttatgccgaatgggtgtaagccacagaagaagaagcattatcgtgagacaacagtggcttctccaatctcaggtgcaccagatacggtcactgcagcaacacctatctcgcaagcacaacctgaaattgagactaggttttccccaattgtccctttagcagcacaaatccatggagaagcagaaaaaggcatgagccaaaaccagaacttcaatttcatacccaccagtgcttccattctcatgcctactaatgctggttggaatgcaacggagctgaagtcagatcataggccatctccagacatcaatgtatctgttccgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook DUF296

Protein Analysis

144

Amino Acids

14.91

Weight (kDa)

6.75

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17630 FvH4_6g17630 FvH4_6g17630
malus_domestica	MD14G1093500.v1.1
prunus_persica	Prupe.7G119600_v2.0.a1
pyrus_communis	pycom14g09060
rosa_chinensis	RchiOBHm_Chr3g0471871
rosa_laevigata	RLG00000024122
rosa_multiflora	Rmu_co8392117.1_g000001 Rmu_sc0000090.1_g000005 Rmu_sc0000423.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409460
rosa_rugosa	Rorug03G0120900
rosa_samantha	Rh3AG172200 Rh3BG197700 Rh3CG188700 Rh3CG196200 Rh3DG176700
rosa_wichuraiana	Rw3G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	98
AciI	CCGC	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	98, 180
AgsI	TTSAA	1 cut(s)	323
AluBI	AGCT	3 cut(s)	78, 109, 386
AluI	AGCT	3 cut(s)	78, 109, 386
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	3 cut(s)	23, 150, 234
Alw44I	GTGCAC	1 cut(s)	184
AoxI	GGCC	1 cut(s)	402
ApaLI	GTGCAC	1 cut(s)	184
ApeKI	GCWGC	3 cut(s)	78, 204, 270
AspS9I	GGNCC	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	30
BaeGI	GKGCMC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	65, 216, 282
BccI	CCATC	2 cut(s)	30, 413
BcoDI	GTCTC	3 cut(s)	23, 150, 234
BfaI	CTAG	1 cut(s)	244
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	4 cut(s)	8, 79, 205, 271
BlsI	GCNGC	4 cut(s)	9, 80, 206, 272
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 180
Bse1I	ACTGG	2 cut(s)	8, 337
Bse3DI	GCAATG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	281
BseLI	CCNNNNNNNGG	2 cut(s)	98, 180
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	2 cut(s)	8, 337
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	3 cut(s)	65, 216, 282
BshFI	GGCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	98, 180
BsmAI	GTCTC	3 cut(s)	23, 150, 234
BsmFI	GGGAC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	395
Bsp19I	CCATGG	1 cut(s)	281
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	8, 337
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	164, 197
BstC8I	GCNNGC	2 cut(s)	83, 223
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	281
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	3 cut(s)	23, 150, 234
BstMBI	GATC	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	65, 216, 282
BsuRI	GGCC	1 cut(s)	404
BtgI	CCRYGG	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	169, 199, 344
Cac8I	GCNNGC	2 cut(s)	83, 223
Cfr13I	GGNCC	1 cut(s)	30
CviAII	CATG	3 cut(s)	282, 302, 353
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
DrdI	GACNNNNNNGTC	1 cut(s)	37
DseDI	GACNNNNNNGTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	3 cut(s)	285, 305, 356
FaiI	YATR	7 cut(s)	69, 114, 283, 303, 330, 354, 400
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	3 cut(s)	281, 301, 352
Fnu4HI	GCNGC	4 cut(s)	8, 79, 205, 271
Fsp4HI	GCNGC	4 cut(s)	8, 79, 205, 271
FspBI	CTAG	1 cut(s)	244
GluI	GCNGC	4 cut(s)	8, 79, 205, 271
GsuI	CTGGAG	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	432
Hin1II	CATG	3 cut(s)	285, 305, 356
HindIII	AAGCTT	1 cut(s)	107
HpaII	CCGG	1 cut(s)	432
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	1 cut(s)	395
Hpy188III	TCNNGA	2 cut(s)	153, 411
Hpy8I	GTNNAC	1 cut(s)	186
HpyCH4III	ACNGT	2 cut(s)	164, 197
HpyCH4V	TGCA	4 cut(s)	81, 186, 204, 378
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	3 cut(s)	285, 305, 356
Kzo9I	GATC	1 cut(s)	395
LmnI	GCTCC	1 cut(s)	383
Lsp1109I	GCAGC	3 cut(s)	65, 216, 282
MaeI	CTAG	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	2 cut(s)	149, 152
MfeI	CAATTG	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	5 cut(s)	46, 94, 235, 256, 323
MmeI	TCCRAC	2 cut(s)	83, 351
MslI	CAYNNNNRTG	2 cut(s)	151, 351
MspI	CCGG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	256
Mva1269I	GAATGC	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	281
NdeII	GATC	1 cut(s)	395
NlaIII	CATG	3 cut(s)	285, 305, 356
NmuCI	GTSAC	1 cut(s)	197
PctI	GAATGC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	9, 80, 206, 272
PspPI	GGNCC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	206
RseI	CAYNNNNRTG	2 cut(s)	151, 351
SatI	GCNGC	4 cut(s)	8, 79, 205, 271
Sau3AI	GATC	1 cut(s)	395
Sau96I	GGNCC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	7 cut(s)	80, 111, 185, 215, 233, 249, 388
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	2 cut(s)	151, 351
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	5 cut(s)	46, 94, 235, 256, 323
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	164, 197
TasI	AATT	5 cut(s)	46, 94, 235, 256, 323
TauI	GCSGC	1 cut(s)	10
TscAI	CASTG	3 cut(s)	169, 206, 344
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	3 cut(s)	78, 204, 270
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	3 cut(s)	169, 206, 344
Van91I	CCANNNNNTGG	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	30
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XspI	CTAG	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.