Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012637

Physical Location & Seq

Genomic Coordinates Forward (+)

17554673 .. 17557076

Gene Structure 2404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAAGAAAAGGAAAGCACCTTTTCTGGCTCACTCGGCAACTCGGACACCGACTCACCCCCACCCAATAACTCGTTCAACCACACCGCCGTCTCGTCCCCGGTGGTCAACACGGCGGTCAACGTGACCTCAGAGACCACACTAGTTGTTGGTCCCACAGCACCAACAGCACCACCTCAACAAACAGCACCAACATCACAAGTACTGGTTGCAGCAAACACAGGTGTTAGAGTCCAAGGAAATGTTGACTTGCCTGGGAAGAAGAAGAGAGGGAGACCCAGAAAGTACGACGCCGACGGAAACTTGAGGCCGGGCCAGACCCACAATTCGGGCCACGTGATTCACGTGCCGCCGCCGCCGGGGTTTTATCTCTCGCCTGGTTCTCCCAGTCCCTCCGAGTTTTCTGCAAAGAAGGGAAGAGGAAGGCCGGCTGGATCCGGCAACTGGCAGGTTCTTGCTTCTTTAGAAACAGCAGGTGGGGACTTCACACCACATGTGGTTACTGTTGGGACCGGAGAGATTGTGGTTGGAAGCTTTATGCCGAATGGGTGTAAGCCACAGAAGAAGAAGCATTATCGTGAGACAACAGTGGCTTCTCCAATCTCAGGTGCACCAGATACGGTCACCGCAGCAACACCTATCTCGCAAGCACAACCTGAAATTGAGACCAGGTTTACCCCAATAGTCCCTTTAGCAGCACAAATCCATGGAGAAGGAGAAAAAGGCATGAGCCAAAACCAGAACTTCAATTTCATACCCACCAGTGCTTCCATTCTCATGCCTACTAATGCTGGTTGGAATGCAACGGAGCTGAAGTCAGATCATAGGCCATCTCCAGACATCAATGTATCTGTTCCGGGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook DUF296

Protein Analysis

288

Amino Acids

30.06

Weight (kDa)

7.91

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17630 FvH4_6g17630 FvH4_6g17630
malus_domestica	MD14G1093500.v1.1
prunus_persica	Prupe.7G119600_v2.0.a1
pyrus_communis	pycom14g09060
rosa_chinensis	RchiOBHm_Chr3g0471871
rosa_laevigata	RLG00000024122
rosa_multiflora	Rmu_co8392117.1_g000001 Rmu_sc0000090.1_g000005 Rmu_sc0000423.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409460
rosa_rugosa	Rorug03G0120900
rosa_samantha	Rh3AG172200 Rh3BG197700 Rh3CG188700 Rh3CG196200 Rh3DG176700
rosa_wichuraiana	Rw3G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	464
Acc36I	ACCTGC	2 cut(s)	439, 464
AciI	CCGC	6 cut(s)	87, 116, 350, 353, 356, 627
AclWI	GGATC	2 cut(s)	429, 442
AcuI	CTGAAG	1 cut(s)	833
AcvI	CACGTG	2 cut(s)	337, 346
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	204, 287
AfiI	CCNNNNNNNGG	4 cut(s)	328, 359, 444, 605
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	79, 748
AhlI	ACTAGT	1 cut(s)	142
AjnI	CCWGG	3 cut(s)	253, 376, 668
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	2 cut(s)	534, 811
AluI	AGCT	2 cut(s)	534, 811
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	5 cut(s)	97, 128, 268, 575, 659
Alw44I	GTGCAC	1 cut(s)	609
AlwI	GGATC	2 cut(s)	429, 442
AoxI	GGCC	5 cut(s)	308, 313, 331, 425, 827
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	3 cut(s)	212, 629, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AspS9I	GGNCC	4 cut(s)	152, 313, 331, 510
AsuC2I	CCSGG	4 cut(s)	101, 312, 360, 858
AsuHPI	GGTGA	2 cut(s)	48, 616
AvaII	GGWCC	2 cut(s)	152, 510
BaeGI	GKGCMC	1 cut(s)	613
BamHI	GGATCC	1 cut(s)	434
BbrPI	CACGTG	2 cut(s)	337, 346
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	3 cut(s)	224, 641, 707
BccI	CCATC	1 cut(s)	838
BceAI	ACGGC	2 cut(s)	74, 129
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	3 cut(s)	255, 378, 670
BcnI	CCSGG	4 cut(s)	101, 312, 360, 858
BcoDI	GTCTC	5 cut(s)	97, 128, 268, 575, 659
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	1 cut(s)	143
BfuAI	ACCTGC	2 cut(s)	439, 464
BisI	GCNGC	6 cut(s)	213, 350, 353, 356, 630, 696
BlsI	GCNGC	6 cut(s)	214, 351, 354, 357, 631, 697
BmcAI	AGTACT	1 cut(s)	204
Bme1390I	CCNGG	7 cut(s)	101, 255, 312, 360, 378, 670, 858
Bme18I	GGWCC	2 cut(s)	152, 510
BmgT120I	GGNCC	4 cut(s)	152, 313, 331, 510
BmiI	GGNNCC	3 cut(s)	154, 436, 511
BmrFI	CCNGG	7 cut(s)	101, 255, 312, 360, 378, 670, 858
BmrI	ACTGGG	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	819
BpuEI	CTTGAG	1 cut(s)	325
BpuMI	CCSGG	4 cut(s)	101, 312, 360, 858
BsaAI	YACGTR	2 cut(s)	337, 346
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	3 cut(s)	128, 268, 659
BsaJI	CCNNGG	5 cut(s)	99, 235, 254, 359, 706
BsaWI	WCCGGW	1 cut(s)	512
BsaXI	ACNNNNNCTCC	4 cut(s)	507, 537, 800, 830
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 359, 444, 605
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	4 cut(s)	210, 387, 449, 762
BseBI	CCWGG	3 cut(s)	255, 378, 670
BseDI	CCNNGG	5 cut(s)	99, 235, 254, 359, 706
BseLI	CCNNNNNNNGG	4 cut(s)	328, 359, 444, 605
BseMII	CTCAG	2 cut(s)	144, 618
BseNI	ACTGG	4 cut(s)	210, 387, 449, 762
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	3 cut(s)	224, 641, 707
BshFI	GGCC	5 cut(s)	310, 315, 333, 427, 829
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	7 cut(s)	101, 311, 359, 428, 438, 513, 857
BslFI	GGGAC	6 cut(s)	82, 138, 375, 494, 523, 671
BslI	CCNNNNNNNGG	4 cut(s)	328, 359, 444, 605
BsmAI	GTCTC	5 cut(s)	97, 128, 268, 575, 659
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	6 cut(s)	82, 138, 375, 494, 523, 671
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	5 cut(s)	310, 315, 333, 427, 829
Bso31I	GGTCTC	3 cut(s)	128, 268, 659
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	2 cut(s)	434, 820
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	6 cut(s)	87, 116, 350, 353, 356, 627
BspANI	GGCC	5 cut(s)	310, 315, 333, 427, 829
BspCNI	CTCAG	2 cut(s)	143, 617
BspLI	GGNNCC	3 cut(s)	154, 436, 511
BspMI	ACCTGC	2 cut(s)	439, 464
BspPI	GGATC	2 cut(s)	429, 442
BspTNI	GGTCTC	3 cut(s)	128, 268, 659
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	4 cut(s)	210, 387, 449, 762
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	5 cut(s)	99, 235, 254, 359, 706
BssMI	GATC	2 cut(s)	434, 820
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	235, 706
Bst2UI	CCWGG	3 cut(s)	255, 378, 670
Bst4CI	ACNGT	3 cut(s)	505, 589, 622
Bst6I	CTCTTC	2 cut(s)	260, 412
BstACI	GRCGYC	1 cut(s)	291
BstBAI	YACGTR	2 cut(s)	337, 346
BstC8I	GCNNGC	2 cut(s)	429, 648
BstDEI	CTNAG	2 cut(s)	130, 604
BstDSI	CCRYGG	1 cut(s)	706
BstEII	GGTNACC	1 cut(s)	622
BstKTI	GATC	2 cut(s)	437, 823
BstMAI	GTCTC	5 cut(s)	97, 128, 268, 575, 659
BstMBI	GATC	2 cut(s)	434, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 167, 355
BstNI	CCWGG	3 cut(s)	255, 378, 670
BstNSI	RCATGY	1 cut(s)	497
BstPI	GGTNACC	1 cut(s)	622
BstSCI	CCNGG	7 cut(s)	99, 253, 310, 358, 376, 668, 856
BstSLI	GKGCMC	1 cut(s)	613
BstV1I	GCAGC	3 cut(s)	224, 641, 707
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	5 cut(s)	310, 315, 333, 427, 829
BtgI	CCRYGG	1 cut(s)	706
BtsIMutI	CAGTG	2 cut(s)	594, 769
BveI	ACCTGC	2 cut(s)	439, 464
Cac8I	GCNNGC	2 cut(s)	429, 648
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	4 cut(s)	152, 313, 331, 510
CseI	GACGC	1 cut(s)	299
CsiI	ACCWGGT	1 cut(s)	668
Csp6I	GTAC	2 cut(s)	203, 286
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	4 cut(s)	494, 707, 727, 778
CviQI	GTAC	2 cut(s)	203, 286
DdeI	CTNAG	2 cut(s)	130, 604
DpnI	GATC	2 cut(s)	436, 822
DpnII	GATC	2 cut(s)	434, 820
Eam1104I	CTCTTC	2 cut(s)	260, 412
EarI	CTCTTC	2 cut(s)	260, 412
Eco130I	CCWWGG	2 cut(s)	235, 706
Eco31I	GGTCTC	3 cut(s)	128, 268, 659
Eco47I	GGWCC	2 cut(s)	152, 510
Eco57I	CTGAAG	1 cut(s)	833
Eco72I	CACGTG	2 cut(s)	337, 346
Eco91I	GGTNACC	1 cut(s)	622
EcoO65I	GGTNACC	1 cut(s)	622
EcoRII	CCWGG	3 cut(s)	253, 376, 668
EcoT14I	CCWWGG	2 cut(s)	235, 706
ErhI	CCWWGG	2 cut(s)	235, 706
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	4 cut(s)	497, 710, 730, 781
FaiI	YATR	7 cut(s)	495, 539, 708, 728, 755, 779, 825
FaqI	GGGAC	6 cut(s)	82, 138, 375, 494, 523, 671
FatI	CATG	4 cut(s)	493, 706, 726, 777
Fnu4HI	GCNGC	6 cut(s)	213, 350, 353, 356, 630, 696
Fsp4HI	GCNGC	6 cut(s)	213, 350, 353, 356, 630, 696
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	6 cut(s)	213, 350, 353, 356, 630, 696
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	5 cut(s)	310, 315, 333, 427, 829
HapII	CCGG	7 cut(s)	101, 311, 359, 428, 438, 513, 857
HgaI	GACGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	4 cut(s)	497, 710, 730, 781
HincII	GTYRAC	3 cut(s)	109, 121, 247
HindII	GTYRAC	3 cut(s)	109, 121, 247
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	3 cut(s)	53, 231, 340
HpaII	CCGG	7 cut(s)	101, 311, 359, 428, 438, 513, 857
HphI	GGTGA	2 cut(s)	48, 616
Hpy166II	GTNNAC	5 cut(s)	109, 121, 247, 611, 675
Hpy188I	TCNGA	4 cut(s)	46, 133, 397, 820
Hpy188III	TCNNGA	2 cut(s)	578, 836
Hpy8I	GTNNAC	5 cut(s)	109, 121, 247, 611, 675
Hpy99I	CGWCG	2 cut(s)	293, 299
HpyAV	CCTTC	3 cut(s)	406, 417, 707
HpyCH4III	ACNGT	3 cut(s)	505, 589, 622
HpyCH4IV	ACGT	3 cut(s)	123, 336, 345
HpyCH4V	TGCA	4 cut(s)	212, 407, 611, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 167, 355
HpyF3I	CTNAG	2 cut(s)	130, 604
HpySE526I	ACGT	3 cut(s)	123, 336, 345
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	4 cut(s)	497, 710, 730, 781
KroI	GCCGGC	1 cut(s)	427
KroNI	GCCGGC	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	434, 820
LmnI	GCTCC	1 cut(s)	808
Lsp1109I	GCAGC	3 cut(s)	224, 641, 707
MabI	ACCWGGT	1 cut(s)	668
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	3 cut(s)	123, 336, 345
MaeIII	GTNAC	3 cut(s)	124, 499, 622
MalI	GATC	2 cut(s)	436, 822
MboI	GATC	2 cut(s)	434, 820
MboII	GAAGA	7 cut(s)	17, 271, 274, 277, 429, 574, 577
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	4 cut(s)	325, 660, 748, 862
MlyI	GAGTC	2 cut(s)	47, 240
MmeI	TCCRAC	2 cut(s)	508, 776
MnlI	CCTC	6 cut(s)	139, 186, 263, 300, 403, 413
MroNI	GCCGGC	1 cut(s)	427
MslI	CAYNNNNRTG	2 cut(s)	576, 776
MspI	CCGG	7 cut(s)	101, 311, 359, 428, 438, 513, 857
MspR9I	CCNGG	7 cut(s)	101, 255, 312, 360, 378, 670, 858
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	3 cut(s)	255, 378, 670
MwoI	GCNNNNNNNGC	3 cut(s)	36, 167, 355
NaeI	GCCGGC	1 cut(s)	429
NciI	CCSGG	4 cut(s)	101, 312, 360, 858
NcoI	CCATGG	1 cut(s)	706
NdeII	GATC	2 cut(s)	434, 820
NgoMIV	GCCGGC	1 cut(s)	427
NlaIII	CATG	4 cut(s)	497, 710, 730, 781
NlaIV	GGNNCC	3 cut(s)	154, 436, 511
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	124, 622
NspI	RCATGY	1 cut(s)	497
PaqCI	CACCTGC	1 cut(s)	464
PciI	ACATGT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PctI	GAATGC	1 cut(s)	805
PdiI	GCCGGC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	6 cut(s)	214, 351, 354, 357, 631, 697
PleI	GAGTC	2 cut(s)	47, 239
PmaCI	CACGTG	2 cut(s)	337, 346
PmlI	CACGTG	2 cut(s)	337, 346
PpsI	GAGTC	2 cut(s)	47, 239
Ppu21I	YACGTR	2 cut(s)	337, 346
PscI	ACATGT	1 cut(s)	493
Psp6I	CCWGG	3 cut(s)	253, 376, 668
PspCI	CACGTG	2 cut(s)	337, 346
PspEI	GGTNACC	1 cut(s)	622
PspGI	CCWGG	3 cut(s)	253, 376, 668
PspN4I	GGNNCC	3 cut(s)	154, 436, 511
PspPI	GGNCC	4 cut(s)	152, 313, 331, 510
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	2 cut(s)	204, 287
RsaNI	GTAC	2 cut(s)	203, 286
RseI	CAYNNNNRTG	2 cut(s)	576, 776
SatI	GCNGC	6 cut(s)	213, 350, 353, 356, 630, 696
Sau3AI	GATC	2 cut(s)	434, 820
Sau96I	GGNCC	4 cut(s)	152, 313, 331, 510
ScaI	AGTACT	1 cut(s)	204
SchI	GAGTC	2 cut(s)	47, 240
ScrFI	CCNGG	7 cut(s)	101, 255, 312, 360, 378, 670, 858
SduI	GDGCHC	1 cut(s)	613
SexAI	ACCWGGT	1 cut(s)	668
SinI	GGWCC	2 cut(s)	152, 510
SmiMI	CAYNNNNRTG	2 cut(s)	576, 776
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	4 cut(s)	325, 660, 748, 862
SsiI	CCGC	6 cut(s)	87, 116, 350, 353, 356, 627
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	7 cut(s)	99, 253, 310, 358, 376, 668, 856
StyI	CCWWGG	2 cut(s)	235, 706
TaaI	ACNGT	3 cut(s)	505, 589, 622
TaiI	ACGT	3 cut(s)	126, 339, 348
TasI	AATT	4 cut(s)	325, 660, 748, 862
TatI	WGTACW	1 cut(s)	202
TauI	GCSGC	3 cut(s)	352, 355, 358
TfiI	GAWTC	1 cut(s)	340
TscAI	CASTG	2 cut(s)	594, 769
TseFI	GTSAC	2 cut(s)	124, 622
TseI	GCWGC	3 cut(s)	212, 629, 695
Tsp45I	GTSAC	2 cut(s)	124, 622
TspDTI	ATGAA	1 cut(s)	742
TspGWI	ACGGA	2 cut(s)	312, 821
TspRI	CASTG	2 cut(s)	594, 769
VneI	GTGCAC	1 cut(s)	609
VpaK11BI	GGWCC	2 cut(s)	152, 510
XceI	RCATGY	1 cut(s)	497
XspI	CTAG	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.