Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000090.1

Orthogroup ID

OG0012637

Physical Location & Seq

Genomic Coordinates Forward (+)

9166 .. 13177

Gene Structure 4012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000090.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggaagaaaaggaaagcaccttttctggctcactcggcaactcggacaccgactcacccccacccaataactcgctcaaccacaccgccgtctcgtccccggtggtcaacacggcggggcgctttgagttgttgtctttatcgggatcgtttacagtcactgagattggtggtgtaagaagcaggactggcggcttgagtgtctcattggctggaccagatggtcgtgtaattggtggtggcattgctggtatgctaatagctgcgagccctatccaaattgtggttggaagctttatgccgaatgggtgtaagccacagaagaagaagcattatcgtgagacaacagtggcttctccaatctcaggtgcaccagatacggtcactgcagcaacacctatctcgcaagcacaacctgaaattgagactaggttttccccaattgtccctttagcagcacaaatccatggagaagcagaaaaaggcatgagccaaaaccagaacttcaatttcatacccaccagtgcttccattctcatgcctactaatgctggttggaatgcaacggagctgaagtcagatcataggccatctccagacatcaatgtatctgttccggagcctcttactatcgtgttcacgcttcccgcatcattttgtatcagagcaggtattgcccgctccttagcagacgacgatctaagggagaagttcactaccaccaacctcaacgatgctagtcgtagagtatctatcaaagaaagttttgttgaagaggaacatgccaagggattcgccctaggacaaccttatcaatccaaaaaaaaaagagaaaaaaaaaaacatggaacgttggatattcacaacgccatattacgacgacttccgaactacatgtgtcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook DUF296

Protein Analysis

301

Amino Acids

32.22

Weight (kDa)

8.4

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012637)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g17630 FvH4_6g17630 FvH4_6g17630
malus_domestica	MD14G1093500.v1.1
prunus_persica	Prupe.7G119600_v2.0.a1
pyrus_communis	pycom14g09060
rosa_chinensis	RchiOBHm_Chr3g0471871
rosa_laevigata	RLG00000024122
rosa_multiflora	Rmu_co8392117.1_g000001 Rmu_sc0000090.1_g000005 Rmu_sc0000423.1_g000019
rosa_roxburghii	Rroxscaffold_6G00409460
rosa_rugosa	Rorug03G0120900
rosa_samantha	Rh3AG172200 Rh3BG197700 Rh3CG188700 Rh3CG196200 Rh3DG176700
rosa_wichuraiana	Rw3G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	659
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccBSI	CCGCTC	1 cut(s)	681
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	5 cut(s)	87, 116, 192, 648, 679
AclI	AACGTT	1 cut(s)	851
AclWI	GGATC	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	283, 365
AflIII	ACRYGT	1 cut(s)	894
AgsI	TTSAA	2 cut(s)	508, 773
AluBI	AGCT	3 cut(s)	263, 294, 571
AluI	AGCT	3 cut(s)	263, 294, 571
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	4 cut(s)	97, 208, 335, 419
Alw44I	GTGCAC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	616
AoxI	GGCC	1 cut(s)	587
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	3 cut(s)	263, 389, 455
AspA2I	CCTAGG	1 cut(s)	799
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	215
AvrII	CCTAGG	1 cut(s)	799
BaeGI	GKGCMC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	250, 401, 467
BccI	CCATC	2 cut(s)	215, 598
BceAI	ACGGC	2 cut(s)	74, 129
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	4 cut(s)	97, 208, 335, 419
BfaI	CTAG	3 cut(s)	429, 738, 800
BfmI	CTRYAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	659
BisI	GCNGC	4 cut(s)	193, 264, 390, 456
BlnI	CCTAGG	1 cut(s)	799
BlsI	GCNGC	4 cut(s)	194, 265, 391, 457
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	2 cut(s)	659, 724
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	685
BpuEI	CTTGAG	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	99, 466, 786, 799
BsaWI	WCCGGW	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 365
Bse1I	ACTGG	2 cut(s)	193, 522
Bse3DI	GCAATG	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	616
BseDI	CCNNGG	4 cut(s)	99, 466, 786, 799
BseLI	CCNNNNNNNGG	2 cut(s)	283, 365
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	2 cut(s)	153, 378
BseNI	ACTGG	2 cut(s)	193, 522
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	3 cut(s)	250, 401, 467
BshFI	GGCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	101, 617
BslFI	GGGAC	2 cut(s)	82, 431
BslI	CCNNNNNNNGG	2 cut(s)	283, 365
BsmAI	GTCTC	4 cut(s)	97, 208, 335, 419
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	2 cut(s)	82, 431
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	589
Bsp1286I	GDGCHC	2 cut(s)	272, 373
Bsp13I	TCCGGA	1 cut(s)	616
Bsp143I	GATC	3 cut(s)	146, 580, 697
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	5 cut(s)	87, 116, 192, 648, 679
BspANI	GGCC	1 cut(s)	589
BspCNI	CTCAG	2 cut(s)	154, 377
BspEI	TCCGGA	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	621
BspMAI	CTGCAG	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	1 cut(s)	154
BsrBI	CCGCTC	1 cut(s)	681
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	193, 522
BssECI	CCNNGG	4 cut(s)	99, 466, 786, 799
BssMI	GATC	3 cut(s)	146, 580, 697
BssT1I	CCWWGG	3 cut(s)	466, 786, 799
Bst4CI	ACNGT	3 cut(s)	157, 349, 382
Bst6I	CTCTTC	1 cut(s)	768
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	3 cut(s)	268, 408, 679
BstDEI	CTNAG	4 cut(s)	162, 364, 685, 701
BstDSI	CCRYGG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	149, 583, 700
BstMAI	GTCTC	4 cut(s)	97, 208, 335, 419
BstMBI	GATC	3 cut(s)	146, 580, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 189, 674
BstNSI	RCATGY	2 cut(s)	785, 898
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	3 cut(s)	250, 401, 467
BsuRI	GGCC	1 cut(s)	589
BtgI	CCRYGG	1 cut(s)	466
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	4 cut(s)	159, 354, 384, 529
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	3 cut(s)	268, 408, 679
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	6 cut(s)	467, 487, 538, 782, 845, 895
DdeI	CTNAG	4 cut(s)	162, 364, 685, 701
DpnI	GATC	3 cut(s)	148, 582, 699
DpnII	GATC	3 cut(s)	146, 580, 697
DrdI	GACNNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Eco130I	CCWWGG	3 cut(s)	466, 786, 799
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	593
EcoT14I	CCWWGG	3 cut(s)	466, 786, 799
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	3 cut(s)	466, 786, 799
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	6 cut(s)	470, 490, 541, 785, 848, 898
FaqI	GGGAC	2 cut(s)	82, 431
FatI	CATG	6 cut(s)	466, 486, 537, 781, 844, 894
FauI	CCCGC	3 cut(s)	109, 655, 686
Fnu4HI	GCNGC	4 cut(s)	193, 264, 390, 456
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	4 cut(s)	193, 264, 390, 456
FspBI	CTAG	3 cut(s)	429, 738, 800
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	4 cut(s)	193, 264, 390, 456
GsuI	CTGGAG	1 cut(s)	579
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	2 cut(s)	101, 617
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	6 cut(s)	470, 490, 541, 785, 848, 898
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	2 cut(s)	53, 792
HpaII	CCGG	2 cut(s)	101, 617
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	5 cut(s)	109, 153, 371, 639, 714
Hpy188I	TCNGA	4 cut(s)	46, 580, 665, 888
Hpy188III	TCNNGA	4 cut(s)	144, 338, 596, 617
Hpy8I	GTNNAC	5 cut(s)	109, 153, 371, 639, 714
Hpy99I	CGWCG	2 cut(s)	698, 882
HpyCH4III	ACNGT	3 cut(s)	157, 349, 382
HpyCH4IV	ACGT	1 cut(s)	851
HpyCH4V	TGCA	3 cut(s)	371, 389, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 189, 674
HpyF3I	CTNAG	4 cut(s)	162, 364, 685, 701
HpySE526I	ACGT	1 cut(s)	851
Hsp92II	CATG	6 cut(s)	470, 490, 541, 785, 848, 898
HspAI	GCGC	1 cut(s)	121
Kpn2I	TCCGGA	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	146, 580, 697
LmnI	GCTCC	3 cut(s)	568, 619, 686
Lsp1109I	GCAGC	3 cut(s)	250, 401, 467
LweI	GCATC	2 cut(s)	659, 724
MaeI	CTAG	3 cut(s)	429, 738, 800
MaeII	ACGT	1 cut(s)	851
MaeIII	GTNAC	2 cut(s)	157, 382
MalI	GATC	3 cut(s)	148, 582, 699
MbiI	CCGCTC	1 cut(s)	681
MboI	GATC	3 cut(s)	146, 580, 697
MboII	GAAGA	4 cut(s)	17, 334, 337, 785
MfeI	CAATTG	1 cut(s)	441
MhlI	GDGCHC	2 cut(s)	272, 373
MluCI	AATT	5 cut(s)	231, 279, 420, 441, 508
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	3 cut(s)	268, 536, 834
MnlI	CCTC	3 cut(s)	633, 737, 769
MroI	TCCGGA	1 cut(s)	616
MseI	TTAA	1 cut(s)	904
MslI	CAYNNNNRTG	2 cut(s)	336, 536
MspI	CCGG	2 cut(s)	101, 617
MspR9I	CCNGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	565
MwoI	GCNNNNNNNGC	3 cut(s)	36, 189, 674
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	3 cut(s)	146, 580, 697
NlaIII	CATG	6 cut(s)	470, 490, 541, 785, 848, 898
NlaIV	GGNNCC	1 cut(s)	621
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	157, 382
NspI	RCATGY	2 cut(s)	785, 898
PciI	ACATGT	1 cut(s)	894
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	792
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	4 cut(s)	194, 265, 391, 457
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PscI	ACATGT	1 cut(s)	894
Psp1406I	AACGTT	1 cut(s)	851
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	161
RseI	CAYNNNNRTG	2 cut(s)	336, 536
SaqAI	TTAA	1 cut(s)	904
SatI	GCNGC	4 cut(s)	193, 264, 390, 456
Sau3AI	GATC	3 cut(s)	146, 580, 697
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	272, 373
SfaNI	GCATC	2 cut(s)	659, 724
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	336, 536
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	5 cut(s)	231, 279, 420, 441, 508
SsiI	CCGC	5 cut(s)	87, 116, 192, 648, 679
SspMI	CTAG	3 cut(s)	429, 738, 800
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	3 cut(s)	466, 786, 799
TaaI	ACNGT	3 cut(s)	157, 349, 382
TaiI	ACGT	1 cut(s)	854
TasI	AATT	5 cut(s)	231, 279, 420, 441, 508
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	792
Tru1I	TTAA	1 cut(s)	904
Tru9I	TTAA	1 cut(s)	904
TscAI	CASTG	4 cut(s)	166, 354, 391, 529
TseFI	GTSAC	2 cut(s)	157, 382
TseI	GCWGC	3 cut(s)	263, 389, 455
Tsp45I	GTSAC	2 cut(s)	157, 382
TspDTI	ATGAA	1 cut(s)	502
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	4 cut(s)	166, 354, 391, 529
Van91I	CCANNNNNTGG	1 cut(s)	283
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	1 cut(s)	215
XceI	RCATGY	2 cut(s)	785, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmaJI	CCTAGG	1 cut(s)	799
XspI	CTAG	3 cut(s)	429, 738, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.