Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8399353.1

Orthogroup ID

OG0007721

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 990

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8399353.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 604 bp

tcaaattgagactgacagcaaatttctggaggcacaacacataatggattatagccttctcctgggtgtgcattaccgagcccctcaacatctgcggtctctcatgtcctacaatacaagcactagagctgatggattgggaatggttgcagaggaagaggctctggaggacgagatctccaactacccgcaaggacttgtcttaatcccgcgcggaacagatgatggtactgttgttgcaggccctcacatcagaggtaaccgactgagagcatcatctgctggttatgaggaagtggatcttcttttacctggcactgcaagactccaagttcaactgggtgtaaacatgccatcaagagcagagcagattatggagaatcagggagacgagcagatgtttcatggagtgtatgatgttgtgctatatcttgggatcattgatatattgcaagactacaacatgggcaagaagattgaacatgcatacaaatctcttcagtttgattccttatccatctccgctgtggaccctacattctactcccgacgcttcttggaattcattcagaaggtcttccctcctaatgttgcaacaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

200

Amino Acids

22.42

Weight (kDa)

4.89

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09920 AT3G09920 AT3G09920 AT3G09920
fragaria_vesca	FvH4_6g16890 FvH4_6g16890 FvH4_6g16890
malus_domestica	MD04G1088700.v1.1 MD12G1106400.v1.1
prunus_persica	Prupe.7G125200_v2.0.a1 Prupe.7G125200_v2.0.a1
pyrus_communis	pycom04g08300 pycom12g10690
rosa_chinensis	RchiOBHm_Chr3g0470911
rosa_laevigata	RLG00000024234
rosa_multiflora	Rmu_co8399353.1_g000001 Rmu_sc0003361.1_g000002 Rmu_sc0010267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410420
rosa_rugosa	Rorug03G0113600
rosa_samantha	Rh3BG188800 Rh3CG178800 Rh3DG187300
rosa_wichuraiana	Rw3G015390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	212, 214
AciI	CCGC	5 cut(s)	95, 189, 210, 214, 523
AclWI	GGATC	2 cut(s)	307, 444
AcsI	RAATTY	2 cut(s)	21, 561
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	336, 480
AjnI	CCWGG	2 cut(s)	61, 311
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw26I	GTCTC	3 cut(s)	3, 103, 382
AlwI	GGATC	2 cut(s)	307, 444
AoxI	GGCC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	21, 561
Asp700I	GAANNNNTTC	2 cut(s)	565, 576
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	243, 530
AvaII	GGWCC	1 cut(s)	530
BaeI	ACNNNNGTAYC	2 cut(s)	220, 253
BanII	GRGCYC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	569
BccI	CCATC	4 cut(s)	126, 219, 362, 525
BciT130I	CCWGG	2 cut(s)	63, 313
BcoDI	GTCTC	3 cut(s)	3, 103, 382
BfaI	CTAG	1 cut(s)	124
BglII	AGATCT	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	63, 313
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	243, 530
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	2 cut(s)	63, 313
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	569
BpmI	CTGGAG	2 cut(s)	48, 186
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	63, 313
BseDI	CCNNGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	343
Bsh1236I	CGCG	2 cut(s)	212, 214
BshFI	GGCC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	3 cut(s)	3, 103, 382
BsmBI	CGTCTC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	244
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	175, 299, 436
BspACI	CCGC	5 cut(s)	95, 189, 210, 214, 523
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	2 cut(s)	212, 214
BspLI	GGNNCC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	307, 444
BspTNI	GGTCTC	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	3 cut(s)	175, 299, 436
Bst2UI	CCWGG	2 cut(s)	63, 313
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	151, 502
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	258
BstFNI	CGCG	2 cut(s)	212, 214
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	178, 302, 439
BstMAI	GTCTC	3 cut(s)	3, 103, 382
BstMBI	GATC	3 cut(s)	175, 299, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	2 cut(s)	63, 313
BstNSI	RCATGY	2 cut(s)	353, 486
BstPI	GGTNACC	1 cut(s)	258
BstSCI	CCNGG	2 cut(s)	61, 311
BstUI	CGCG	2 cut(s)	212, 214
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	2 cut(s)	175, 299
BstYI	RGATCY	2 cut(s)	175, 299
BsuRI	GGCC	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	243, 530
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	5 cut(s)	104, 350, 405, 464, 483
CviJI	RGCY	5 cut(s)	55, 81, 129, 162, 244
CviKI_1	RGCY	5 cut(s)	55, 81, 129, 162, 244
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	3 cut(s)	177, 301, 438
DpnII	GATC	3 cut(s)	175, 299, 436
Eam1104I	CTCTTC	2 cut(s)	151, 502
EarI	CTCTTC	2 cut(s)	151, 502
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	483
Eco91I	GGTNACC	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	243
EcoO65I	GGTNACC	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	61, 311
EcoT22I	ATGCAT	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	5 cut(s)	107, 353, 408, 467, 486
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FatI	CATG	5 cut(s)	103, 349, 404, 463, 482
FauI	CCCGC	2 cut(s)	196, 217
FriOI	GRGCYC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	124
GlaI	GCGC	1 cut(s)	213
GsuI	CTGGAG	2 cut(s)	48, 186
HaeIII	GGCC	1 cut(s)	244
HgaI	GACGC	1 cut(s)	559
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	5 cut(s)	107, 353, 408, 467, 486
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	3 cut(s)	325, 380, 507
Hpy166II	GTNNAC	2 cut(s)	347, 530
Hpy188I	TCNGA	2 cut(s)	255, 571
Hpy188III	TCNNGA	4 cut(s)	27, 165, 358, 547
Hpy8I	GTNNAC	2 cut(s)	347, 530
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	2 cut(s)	66, 566
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	7 cut(s)	71, 150, 240, 321, 452, 486, 594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	107, 353, 408, 467, 486
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	3 cut(s)	175, 299, 436
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	3 cut(s)	177, 301, 438
MboI	GATC	3 cut(s)	175, 299, 436
MboII	GAAGA	5 cut(s)	168, 294, 485, 489, 569
MflI	RGATCY	2 cut(s)	175, 299
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	3 cut(s)	4, 21, 561
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	9 cut(s)	23, 94, 146, 152, 161, 249, 256, 284, 592
Mph1103I	ATGCAT	1 cut(s)	488
MroXI	GAANNNNTTC	2 cut(s)	565, 576
MseI	TTAA	2 cut(s)	204, 602
MspA1I	CMGCKG	1 cut(s)	525
MspR9I	CCNGG	2 cut(s)	63, 313
MvaI	CCWGG	2 cut(s)	63, 313
MvnI	CGCG	2 cut(s)	212, 214
MwoI	GCNNNNNNNGC	1 cut(s)	279
NdeII	GATC	3 cut(s)	175, 299, 436
NlaIII	CATG	5 cut(s)	107, 353, 408, 467, 486
NlaIV	GGNNCC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	488
NspI	RCATGY	2 cut(s)	353, 486
PdmI	GAANNNNTTC	2 cut(s)	565, 576
PfeI	GAWTC	2 cut(s)	380, 507
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	61, 311
PspEI	GGTNACC	1 cut(s)	258
PspGI	CCWGG	2 cut(s)	61, 311
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	2 cut(s)	243, 530
PsuI	RGATCY	2 cut(s)	175, 299
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	204, 602
Sau3AI	GATC	3 cut(s)	175, 299, 436
Sau96I	GGNCC	2 cut(s)	243, 530
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	2 cut(s)	63, 313
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	4 cut(s)	131, 260, 314, 577
SfaNI	GCATC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	530
Sse9I	AATT	3 cut(s)	4, 21, 561
SsiI	CCGC	5 cut(s)	95, 189, 210, 214, 523
SspMI	CTAG	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	61, 311
TaaI	ACNGT	1 cut(s)	233
TasI	AATT	3 cut(s)	4, 21, 561
TfiI	GAWTC	2 cut(s)	380, 507
Tru1I	TTAA	2 cut(s)	204, 602
Tru9I	TTAA	2 cut(s)	204, 602
TscAI	CASTG	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	393, 554
TspRI	CASTG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	2 cut(s)	21, 561
XceI	RCATGY	2 cut(s)	353, 486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	565, 576
XspI	CTAG	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.