Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007721

Physical Location & Seq

Genomic Coordinates Reverse (-)

15707432 .. 15709150

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG178800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCTTCCTAGTTATCATCATCATGTAAAGACGTATGAAAACACCCTCATCACAAAATTCTTCGGCCTTCACAGGATTAAACCTTCAAGTGGTCAAAAGTTCCGGTTTGTAGTGATGGGAAACATGTTCTGCACAGAGTTAAGAATACATAGAAGATTTGATTTGAAAGGTTCATCCCTTGGGCGTTCTGCAGATAAGATTGAAATTGATGAAAACACCACGTTAAAGGACTTGGATTTAAACTACTGCTTTTATTTGGAACCTTCTTGGCGGGAGTCTTTATTGAATCAAATTGAGACTGACAGCAAATTTCTGGAGGCACAACACATAATGGATTATAGCCTTCTCCTGGGTGTGCATTACCGAGCCCCCCAACATCTGCGGTCTCTCATGTCCTACAATACAAGCACTAGAGCTGATGGATTGGGAATGGTTGCAGAGGAAGAGGCTCTGGAGGACGAGATCTCCAACTACCCGCAAGGACTTGTCTTAATCCCGCGCGGAACAGATGATGGTACTGTTGTTGCAGGCCCTCACATCAGAGGTAACCGACTGAGAGCATCATCTGCTGGTTATGAGGAAGTGGATCTTCTTTTACCTGGCACTGCAAGACTCCAAGTTCAACTGGGTGTAAACATGCCATCAAGAGCAGAGCAGATTATGGAGAATCAGGGAGACGAGCAGATGTTTCATGGAGTGTATGATGTTGTGCTATATCTTGGGATCATTGATATATTGCAAGACTACAACATGGGCAAGAAGATTGAACATGCATACAAATCTCTTCAGTTTGATTCCTTATCCATCTCCGCTGTGGACCCTACATTCTACTCCCGACGCTTCTTGGAATTCATTCAGAAGGTCTTCCCTCCTAATGTTGCAACAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 ko04072 ko04139 ko04144 ko04666 ko04810 ko05231 map00562 map01100 map04011 map04070 map04072 map04139 map04144 map04666 map04810 map05231

Pfam Domains

Protein Families

MORN PIP5K

Protein Analysis

296

Amino Acids

33.79

Weight (kDa)

5.77

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	1 - 287	4e-78	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09920 AT3G09920 AT3G09920 AT3G09920
fragaria_vesca	FvH4_6g16890 FvH4_6g16890 FvH4_6g16890
malus_domestica	MD04G1088700.v1.1 MD12G1106400.v1.1
prunus_persica	Prupe.7G125200_v2.0.a1 Prupe.7G125200_v2.0.a1
pyrus_communis	pycom04g08300 pycom12g10690
rosa_chinensis	RchiOBHm_Chr3g0470911
rosa_laevigata	RLG00000024234
rosa_multiflora	Rmu_co8399353.1_g000001 Rmu_sc0003361.1_g000002 Rmu_sc0010267.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410420
rosa_rugosa	Rorug03G0113600
rosa_samantha	Rh3BG188800 Rh3CG178800 Rh3DG187300
rosa_wichuraiana	Rw3G015390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	499, 501
AciI	CCGC	6 cut(s)	271, 382, 476, 497, 501, 810
AclWI	GGATC	2 cut(s)	594, 731
AcsI	RAATTY	3 cut(s)	56, 308, 848
AcuI	CTGAAG	1 cut(s)	770
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	2 cut(s)	89, 349
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	6 cut(s)	87, 166, 203, 286, 623, 767
AjnI	CCWGG	2 cut(s)	348, 598
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw26I	GTCTC	3 cut(s)	290, 390, 669
AlwI	GGATC	2 cut(s)	594, 731
AoxI	GGCC	2 cut(s)	64, 529
ApoI	RAATTY	3 cut(s)	56, 308, 848
Asp700I	GAANNNNTTC	2 cut(s)	852, 863
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	2 cut(s)	530, 817
AvaII	GGWCC	1 cut(s)	817
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BanII	GRGCYC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	856
BccI	CCATC	5 cut(s)	109, 413, 506, 649, 812
BciT130I	CCWGG	2 cut(s)	350, 600
BcoDI	GTCTC	3 cut(s)	290, 390, 669
BfaI	CTAG	2 cut(s)	9, 411
BfmI	CTRYAG	1 cut(s)	189
BglII	AGATCT	1 cut(s)	462
Bme1390I	CCNGG	2 cut(s)	350, 600
Bme18I	GGWCC	1 cut(s)	817
BmgT120I	GGNCC	2 cut(s)	530, 817
BmiI	GGNNCC	2 cut(s)	261, 819
BmrFI	CCNGG	2 cut(s)	350, 600
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	1 cut(s)	569
BmuI	ACTGGG	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	856
BpmI	CTGGAG	2 cut(s)	335, 473
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	178, 349
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 349
Bse1I	ACTGG	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	350, 600
BseDI	CCNNGG	2 cut(s)	178, 349
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	89, 349
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	1 cut(s)	630
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	2 cut(s)	499, 501
BshFI	GGCC	2 cut(s)	66, 531
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	89, 349
BsmAI	GTCTC	3 cut(s)	290, 390, 669
BsmBI	CGTCTC	1 cut(s)	669
BsnI	GGCC	2 cut(s)	66, 531
Bso31I	GGTCTC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	3 cut(s)	462, 586, 723
BspACI	CCGC	6 cut(s)	271, 382, 476, 497, 501, 810
BspANI	GGCC	2 cut(s)	66, 531
BspCNI	CTCAG	1 cut(s)	546
BspFNI	CGCG	2 cut(s)	499, 501
BspLI	GGNNCC	2 cut(s)	261, 819
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	2 cut(s)	594, 731
BspTNI	GGTCTC	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	2 cut(s)	178, 349
BssMI	GATC	3 cut(s)	462, 586, 723
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	2 cut(s)	350, 600
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	2 cut(s)	438, 789
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	1 cut(s)	554
BstEII	GGTNACC	1 cut(s)	545
BstF5I	GGATG	1 cut(s)	173
BstFNI	CGCG	2 cut(s)	499, 501
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	3 cut(s)	465, 589, 726
BstMAI	GTCTC	3 cut(s)	290, 390, 669
BstMBI	GATC	3 cut(s)	462, 586, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	2 cut(s)	350, 600
BstNSI	RCATGY	3 cut(s)	127, 640, 773
BstPI	GGTNACC	1 cut(s)	545
BstSCI	CCNGG	2 cut(s)	348, 598
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	2 cut(s)	499, 501
BstV2I	GAAGAC	1 cut(s)	856
BstX2I	RGATCY	2 cut(s)	462, 586
BstYI	RGATCY	2 cut(s)	462, 586
BsuRI	GGCC	2 cut(s)	66, 531
BtsCI	GGATG	1 cut(s)	173
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	529
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	530, 817
CseI	GACGC	1 cut(s)	846
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	7 cut(s)	23, 124, 391, 637, 692, 751, 770
CviJI	RGCY	6 cut(s)	66, 342, 368, 416, 449, 531
CviKI_1	RGCY	6 cut(s)	66, 342, 368, 416, 449, 531
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	1 cut(s)	554
DpnI	GATC	3 cut(s)	464, 588, 725
DpnII	GATC	3 cut(s)	462, 586, 723
DraI	TTTAAA	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	438, 789
EarI	CTCTTC	2 cut(s)	438, 789
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	817
Eco57I	CTGAAG	1 cut(s)	770
Eco91I	GGTNACC	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	530
EcoO65I	GGTNACC	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	848
EcoRII	CCWGG	2 cut(s)	348, 598
EcoT14I	CCWWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	7 cut(s)	26, 127, 394, 640, 695, 754, 773
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FatI	CATG	7 cut(s)	22, 123, 390, 636, 691, 750, 769
FauI	CCCGC	3 cut(s)	264, 483, 504
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	370
FspBI	CTAG	2 cut(s)	9, 411
GlaI	GCGC	1 cut(s)	500
GsuI	CTGGAG	2 cut(s)	335, 473
HaeIII	GGCC	2 cut(s)	66, 531
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	846
HhaI	GCGC	1 cut(s)	501
Hin1II	CATG	7 cut(s)	26, 127, 394, 640, 695, 754, 773
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HinfI	GANTC	5 cut(s)	275, 286, 612, 667, 794
HpaII	CCGG	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	634, 817
Hpy188I	TCNGA	2 cut(s)	542, 858
Hpy188III	TCNNGA	4 cut(s)	314, 452, 645, 834
Hpy8I	GTNNAC	2 cut(s)	634, 817
Hpy99I	CGWCG	1 cut(s)	840
HpyAV	CCTTC	5 cut(s)	77, 93, 273, 353, 853
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	2 cut(s)	32, 221
HpyCH4V	TGCA	9 cut(s)	132, 191, 358, 437, 527, 608, 739, 773, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	1 cut(s)	554
HpySE526I	ACGT	2 cut(s)	32, 221
Hsp92II	CATG	7 cut(s)	26, 127, 394, 640, 695, 754, 773
HspAI	GCGC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	462, 586, 723
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	2 cut(s)	9, 411
MaeII	ACGT	2 cut(s)	32, 221
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	3 cut(s)	464, 588, 725
MboI	GATC	3 cut(s)	462, 586, 723
MboII	GAAGA	7 cut(s)	52, 165, 455, 581, 772, 776, 856
MflI	RGATCY	2 cut(s)	462, 586
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	5 cut(s)	56, 204, 291, 308, 848
MlyI	GAGTC	2 cut(s)	284, 606
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	9 cut(s)	56, 310, 433, 439, 448, 536, 543, 571, 879
Mph1103I	ATGCAT	1 cut(s)	775
MroXI	GAANNNNTTC	2 cut(s)	852, 863
MseI	TTAA	6 cut(s)	78, 140, 224, 239, 491, 889
MslI	CAYNNNNRTG	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	2 cut(s)	350, 600
MvaI	CCWGG	2 cut(s)	350, 600
MvnI	CGCG	2 cut(s)	499, 501
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	3 cut(s)	462, 586, 723
NlaIII	CATG	7 cut(s)	26, 127, 394, 640, 695, 754, 773
NlaIV	GGNNCC	2 cut(s)	261, 819
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	3 cut(s)	127, 640, 773
PciI	ACATGT	1 cut(s)	123
PdmI	GAANNNNTTC	2 cut(s)	852, 863
PfeI	GAWTC	3 cut(s)	286, 667, 794
PleI	GAGTC	2 cut(s)	283, 606
PpsI	GAGTC	2 cut(s)	283, 606
PscI	ACATGT	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	348, 598
PspEI	GGTNACC	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	348, 598
PspN4I	GGNNCC	2 cut(s)	261, 819
PspPI	GGNCC	2 cut(s)	530, 817
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	2 cut(s)	462, 586
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	6 cut(s)	78, 140, 224, 239, 491, 889
Sau3AI	GATC	3 cut(s)	462, 586, 723
Sau96I	GGNCC	2 cut(s)	530, 817
SchI	GAGTC	2 cut(s)	284, 606
ScrFI	CCNGG	2 cut(s)	350, 600
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	9 cut(s)	35, 85, 172, 224, 265, 418, 547, 601, 864
SfaNI	GCATC	1 cut(s)	569
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	817
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	5 cut(s)	56, 204, 291, 308, 848
SsiI	CCGC	6 cut(s)	271, 382, 476, 497, 501, 810
SspMI	CTAG	2 cut(s)	9, 411
StyD4I	CCNGG	2 cut(s)	348, 598
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	2 cut(s)	35, 224
TasI	AATT	5 cut(s)	56, 204, 291, 308, 848
TfiI	GAWTC	3 cut(s)	286, 667, 794
Tru1I	TTAA	6 cut(s)	78, 140, 224, 239, 491, 889
Tru9I	TTAA	6 cut(s)	78, 140, 224, 239, 491, 889
TscAI	CASTG	1 cut(s)	610
TspDTI	ATGAA	5 cut(s)	51, 162, 225, 680, 841
TspRI	CASTG	1 cut(s)	610
VpaK11BI	GGWCC	1 cut(s)	817
XapI	RAATTY	3 cut(s)	56, 308, 848
XceI	RCATGY	3 cut(s)	127, 640, 773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	811
XmnI	GAANNNNTTC	2 cut(s)	852, 863
XspI	CTAG	2 cut(s)	9, 411
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.