Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8403397.1

Orthogroup ID

OG0003178

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 792

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8403397.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 674 bp

atgttcaatacggcctttataaggtccaatattctaatgcttaatcgtgatgaaatagacatactatggaatgtcaaagatcaatttcccaaggatttcagagcagaggttcttttctcggagatggatgccagtccttctcttatatcaattgatttgcctggtattgaggacaaagatggccttccagtggaagcatttgcaaaagtccaagagatctttagcagtgtagattggctacatccaaaaacagatgtagagcttaatgtgctccagcggattgcgtcatcaaatgctattcagaaactggatagtgcttcagtcaataccacagagccaactgctgaacaacttaaatcagaaaataatatcaagagtcccacctccgtggctcaggggaaacatggcagtgcttctgcttatgctacagaaacaggcaagttattgccagagtcaaaacttaaatcaggaagtaatatcaagagttccacatccgtggctcaggggaaacaagtcagtgcttctactgatgctccagaaacaggcaggttcttggcagagtcaattcctgcaaaacttcaatcagaaccaaaggggccagaaaataatgtcaagagtcccactcatgtggcttttcgggagcaatctatgtcaaactttgatctgtctgtaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2 PTEN_C2

Protein Analysis

224

Amino Acids

24.38

Weight (kDa)

5.08

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25050 AT3G32400 AT3G32400 AT3G32410
fragaria_vesca	FvH4_2g41080 FvH4_2g41080 FvH4_2g41080 FvH4_2g41080 FvH4_2g41080 FvH4_2g41080 FvH4_2g41080 FvH4_2g41080 FvH4_2g41080 FvH4_2g41080 FvH4_2g41080 FvH4_2g41080
malus_domestica	MD00G1143700.v1.1 MD15G1039700.v1.1
prunus_persica	Prupe.1G393200_v2.0.a1
pyrus_communis	pycom08g04710 pycom15g03710
rosa_chinensis	RchiOBHm_Chr6g0299461
rosa_laevigata	RLG00000011429
rosa_multiflora	Rmu_co8403397.1_g000001 Rmu_sc0001184.1_g000009
rosa_roxburghii	Rroxscaffold_7G00168650
rosa_rugosa	Rorug06G0288500 Rorug06G0288600 Rorug06G0288700 Rorug06G0288800 Rorug06G0288900 Rorug06G0288900
rosa_samantha	Rh6AG400300 Rh6BG409000 Rh6CG414400 Rh6DG401400
rosa_wichuraiana	Rw6G035040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	537
AciI	CCGC	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	21, 190, 542
AgsI	TTSAA	2 cut(s)	7, 581
AjnI	CCWGG	1 cut(s)	160
AleI	CACNNNNGTG	3 cut(s)	386, 494, 626
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw21I	GWGCWC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	3 cut(s)	12, 181, 596
AspS9I	GGNCC	2 cut(s)	24, 596
AvaII	GGWCC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	2 cut(s)	118, 173
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	162
BfmI	CTRYAG	2 cut(s)	426, 669
BfuAI	ACCTGC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 596
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	118, 520
BplI	GAGNNNNNCTC	2 cut(s)	607, 639
BpmI	CTGGAG	2 cut(s)	257, 519
Bpu10I	CCTNAGC	2 cut(s)	393, 501
BsaJI	CCNNGG	3 cut(s)	90, 387, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 190, 542
Bse1I	ACTGG	3 cut(s)	132, 188, 312
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	3 cut(s)	90, 387, 495
BseGI	GGATG	3 cut(s)	133, 241, 491
BseLI	CCNNNNNNNGG	3 cut(s)	21, 190, 542
BseMII	CTCAG	2 cut(s)	407, 515
BseNI	ACTGG	3 cut(s)	132, 188, 312
BshFI	GGCC	3 cut(s)	14, 183, 598
BsiHKAI	GWGCWC	1 cut(s)	273
BslFI	GGGAC	2 cut(s)	363, 603
BslI	CCNNNNNNNGG	3 cut(s)	21, 190, 542
BsmFI	GGGAC	2 cut(s)	363, 603
BsnI	GGCC	3 cut(s)	14, 183, 598
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	79, 216, 661
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	3 cut(s)	14, 183, 598
BspCNI	CTCAG	2 cut(s)	406, 514
BspLI	GGNNCC	1 cut(s)	597
BspMI	ACCTGC	1 cut(s)	537
BsrI	ACTGG	3 cut(s)	132, 188, 312
BssECI	CCNNGG	3 cut(s)	90, 387, 495
BssMI	GATC	3 cut(s)	79, 216, 661
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	393, 501
BstDSI	CCRYGG	2 cut(s)	387, 495
BstENI	CCTNNNNNAGG	1 cut(s)	19
BstF5I	GGATG	3 cut(s)	133, 241, 491
BstKTI	GATC	3 cut(s)	82, 219, 664
BstMBI	GATC	3 cut(s)	79, 216, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	2 cut(s)	426, 669
BstX2I	RGATCY	1 cut(s)	216
BstXI	CCANNNNNNTGG	3 cut(s)	388, 496, 628
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	14, 183, 598
BtgI	CCRYGG	2 cut(s)	387, 495
BtsCI	GGATG	3 cut(s)	133, 241, 491
BtsI	GCAGTG	2 cut(s)	232, 415
BtsIMutI	CAGTG	4 cut(s)	195, 232, 415, 523
BveI	ACCTGC	1 cut(s)	537
CaiI	CAGNNNCTG	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	24, 596
CseI	GACGC	1 cut(s)	273
CviAII	CATG	2 cut(s)	404, 626
CviJI	RGCY	9 cut(s)	14, 183, 238, 262, 337, 392, 500, 598, 632
CviKI_1	RGCY	9 cut(s)	14, 183, 238, 262, 337, 392, 500, 598, 632
DdeI	CTNAG	2 cut(s)	393, 501
DpnI	GATC	3 cut(s)	81, 218, 663
DpnII	GATC	3 cut(s)	79, 216, 661
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	303
EcoNI	CCTNNNNNAGG	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	407, 629
FaiI	YATR	8 cut(s)	20, 62, 67, 146, 405, 423, 627, 650
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	2 cut(s)	363, 603
FatI	CATG	2 cut(s)	403, 625
FokI	GGATG	3 cut(s)	140, 228, 478
GsuI	CTGGAG	2 cut(s)	257, 519
HaeIII	GGCC	3 cut(s)	14, 183, 598
HgaI	GACGC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	407, 629
HinfI	GANTC	4 cut(s)	376, 452, 560, 616
Hpy188I	TCNGA	5 cut(s)	101, 121, 303, 361, 586
Hpy188III	TCNNGA	7 cut(s)	47, 373, 468, 481, 536, 613, 638
HpyAV	CCTTC	2 cut(s)	147, 194
HpyCH4V	TGCA	2 cut(s)	203, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	2 cut(s)	393, 501
Hsp92II	CATG	2 cut(s)	407, 629
Kzo9I	GATC	3 cut(s)	79, 216, 661
LmnI	GCTCC	3 cut(s)	276, 538, 640
LweI	GCATC	2 cut(s)	118, 520
MalI	GATC	3 cut(s)	81, 218, 663
MboI	GATC	3 cut(s)	79, 216, 661
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	3 cut(s)	83, 150, 564
MlyI	GAGTC	4 cut(s)	385, 461, 569, 625
MnlI	CCTC	3 cut(s)	100, 163, 394
MseI	TTAA	4 cut(s)	42, 264, 354, 462
MslI	CAYNNNNRTG	4 cut(s)	386, 408, 494, 626
MspA1I	CMGCKG	1 cut(s)	277
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	3 cut(s)	79, 216, 661
NlaIII	CATG	2 cut(s)	407, 629
NlaIV	GGNNCC	1 cut(s)	597
OliI	CACNNNNGTG	3 cut(s)	386, 494, 626
PleI	GAGTC	4 cut(s)	384, 460, 568, 624
PpsI	GAGTC	4 cut(s)	384, 460, 568, 624
PsiI	TTATAA	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	24, 596
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	216
RseI	CAYNNNNRTG	4 cut(s)	386, 408, 494, 626
SaqAI	TTAA	4 cut(s)	42, 264, 354, 462
Sau3AI	GATC	3 cut(s)	79, 216, 661
Sau96I	GGNCC	2 cut(s)	24, 596
SchI	GAGTC	4 cut(s)	385, 461, 569, 625
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	5 cut(s)	26, 111, 264, 386, 551
SfaNI	GCATC	2 cut(s)	118, 520
SfcI	CTRYAG	2 cut(s)	426, 669
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	4 cut(s)	386, 408, 494, 626
Sse9I	AATT	3 cut(s)	83, 150, 564
SsiI	CCGC	1 cut(s)	277
SspI	AATATT	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	90
TasI	AATT	3 cut(s)	83, 150, 564
Tru1I	TTAA	4 cut(s)	42, 264, 354, 462
Tru9I	TTAA	4 cut(s)	42, 264, 354, 462
TscAI	CASTG	4 cut(s)	195, 232, 415, 523
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	2 cut(s)	376, 484
TspRI	CASTG	4 cut(s)	195, 232, 415, 523
VpaK11BI	GGWCC	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.