Rorug06G0288500

C2 domain of PTEN tumour-suppressor protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003178
Physical Location & Seq
Reverse (-)
43845272 .. 43848285
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0288500.1

Sequence Viewer

Length: 531 bp
ATGGCAGTCCCCTCTAATCTGACAAATTTCGCATCCGTTTCTCTAAACTCTGCTCGCATTCTTTCTTCTACAAACCGGTCCTGCATTTGCTCCGTTCCTCTGAGCAACAATTACAGTTCTCGAAGCAGCTCAGGCATAAGTGCTTCCGGGATCAATGTCAGGAGACCCATGTCGGTTAAGTCTATGTCTTCTTCCTCGTTCGGTTCTCGGCTCGAAGAGAGCGTCAAGAAGACAGTGGACGAGAACCCAGTTGTGGTCTATTCCAAAAGTTGGTGTTCGTACTCCTCTGAGGTGAAATCCTTGTTCAAAAGGCTTGGTGCGGAGCCAACCGTGATTGAATTGGATGAACTAGGTGCCCAAGGACCACAGGTTCAGAAGGTATTGGAGAGGCTTACAGGACAACATACTGTCCCAAATGTTTTTATTGGGGGGAAACACATTGGAGGTTGTACAGATACTGTGAAGCTACACCGAAAAGGTGAACTTGAACCTTTGCTGGCAGAAGCTAAATCCAAAAACACACAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FH2 PTEN_C2

Protein Analysis

176

Amino Acids

18.91

Weight (kDa)

9.41

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 84 - 147 1.5e-16 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccB7I CCANNNNNTGG 1 cut(s) 270
AciI CCGC 1 cut(s) 320
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 2 cut(s) 281, 451
AfiI CCNNNNNNNGG 2 cut(s) 253, 270
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 3 cut(s) 307, 338, 488
AloI GAACNNNNNNTCC 2 cut(s) 354, 386
AluBI AGCT 3 cut(s) 129, 466, 506
AluI AGCT 3 cut(s) 129, 466, 506
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 458
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
AsiGI ACCGGT 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 78, 362
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 304, 491
AvaII GGWCC 2 cut(s) 78, 362
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 353
BbsI GAAGAC 2 cut(s) 180, 236
BbvI GCAGC 1 cut(s) 138
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 350
BisI GCNGC 1 cut(s) 127
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 2 cut(s) 78, 362
BmgT120I GGNCC 2 cut(s) 78, 362
BmiI GGNNCC 2 cut(s) 324, 355
BmrFI CCNGG 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 242
BoxI GACNNNNGTC 1 cut(s) 169
BpiI GAAGAC 2 cut(s) 180, 236
Bpu10I CCTNAGC 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 358
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 270
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 2 cut(s) 32, 349
BseLI CCNNNNNNNGG 2 cut(s) 253, 270
BseMII CTCAG 3 cut(s) 92, 144, 279
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 274
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 75
BsiSI CCGG 2 cut(s) 76, 147
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 253, 270
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 358
Bsp1407I TGTACA 1 cut(s) 449
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 320
BspCNI CTCAG 3 cut(s) 93, 143, 280
BspLI GGNNCC 2 cut(s) 324, 355
BspPI GGATC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 353
BspTNI GGTCTC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 449
BsrI ACTGG 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 358
Bst4CI ACNGT 5 cut(s) 116, 235, 331, 409, 460
Bst6I CTCTTC 1 cut(s) 210
BstAUI TGTACA 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 55, 498
BstDEI CTNAG 3 cut(s) 101, 130, 288
BstF5I GGATG 2 cut(s) 32, 349
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstPAI GACNNNNGTC 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 146
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 138
BstV2I GAAGAC 2 cut(s) 180, 236
BtsCI GGATG 2 cut(s) 32, 349
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 55, 498
CaiI CAGNNNCTG 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 78, 362
CseI GACGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 280, 450
CspAI ACCGGT 1 cut(s) 75
CviAII CATG 1 cut(s) 169
CviJI RGCY 7 cut(s) 129, 211, 313, 325, 391, 466, 506
CviKI_1 RGCY 7 cut(s) 129, 211, 313, 325, 391, 466, 506
CviQI GTAC 2 cut(s) 280, 450
DdeI CTNAG 3 cut(s) 101, 130, 288
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 78, 362
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 1 cut(s) 172
FaiI YATR 5 cut(s) 137, 170, 185, 405, 529
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 1 cut(s) 395
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 2 cut(s) 19, 356
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 1 cut(s) 350
GluI GCNGC 1 cut(s) 127
HapII CCGG 2 cut(s) 76, 147
HgaI GACGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 172
HpaII CCGG 2 cut(s) 76, 147
HphI GGTGA 2 cut(s) 304, 491
Hpy166II GTNNAC 2 cut(s) 238, 482
Hpy188I TCNGA 4 cut(s) 21, 102, 289, 375
Hpy188III TCNNGA 3 cut(s) 120, 160, 226
Hpy8I GTNNAC 2 cut(s) 238, 482
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 5 cut(s) 116, 235, 331, 409, 460
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 3 cut(s) 101, 130, 288
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 95, 322
LpnPI CCDG 9 cut(s) 89, 94, 117, 145, 160, 261, 353, 381, 482
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 350
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 5 cut(s) 57, 180, 183, 227, 241
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 3 cut(s) 25, 109, 338
MnlI CCTC 7 cut(s) 22, 108, 205, 283, 295, 381, 437
MseI TTAA 1 cut(s) 177
MspI CCGG 2 cut(s) 76, 147
MspR9I CCNGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 148
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 324, 355
NmeAIII GCCGAG 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 270
PfoI TCCNGGA 1 cut(s) 146
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 324, 355
PspPI GGNCC 2 cut(s) 78, 362
PstNI CAGNNNCTG 1 cut(s) 458
RsaI GTAC 2 cut(s) 281, 451
RsaNI GTAC 2 cut(s) 280, 450
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 78, 362
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 2 cut(s) 78, 362
Sse9I AATT 3 cut(s) 25, 109, 338
SsiI CCGC 1 cut(s) 320
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 5 cut(s) 116, 235, 331, 409, 460
TaqI TCGA 2 cut(s) 121, 213
TasI AATT 3 cut(s) 25, 109, 338
TatI WGTACW 1 cut(s) 449
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 240
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 360
TspGWI ACGGA 2 cut(s) 25, 82
TspRI CASTG 1 cut(s) 240
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 2 cut(s) 78, 362
XapI RAATTY 1 cut(s) 25
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.