Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8434101.1

Orthogroup ID

OG0012798

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 438

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8434101.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

gcgcaagaggcaccagcacttcctatttctcaggcagatgtaatccctgaggtttctcaggtacaaggtatggcacatggaggtttaattgatattcctgaaggaaacacaaaacctgaggcagatgttggatttattcaagacatggcaccggaagccggtgatggatttatcgactccacggcatttgattttatgtccctagatgttgatagttttccccctgatgctgacattgacggattgcttgacaattccaacttgtgggattttcttgaacaaagtcctgtgccagatgaaatggattcgacctctgcagaaggcatgcctgtgggaaatgaagtgcagccgacagagaatgggtgggataaaacccagcatatggataagcttactgagcaaatgggaaatcttaaatcaaatactaaacgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

145

Amino Acids

15.62

Weight (kDa)

4.05

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32330 AT1G32330
fragaria_vesca	FvH4_5g22720
malus_domestica	MD06G1037900.v1.1 MD16G1271200.v1.1
prunus_persica	Prupe.5G031100_v2.0.a1
pyrus_communis	pycom16g24070
rosa_chinensis	RchiOBHm_Chr7g0211291
rosa_laevigata	RLG00000003012
rosa_multiflora	Rmu_co8434101.1_g000001 Rmu_sc0001226.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247950
rosa_rugosa	Rorug07G0124900
rosa_samantha	Rh7AG257200 Rh7BG251300 Rh7CG274000 Rh7DG264600
rosa_wichuraiana	Rw7G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	10, 148
AccB7I	CCANNNNNTGG	2 cut(s)	264, 382
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	3 cut(s)	158, 264, 382
AgsI	TTSAA	2 cut(s)	140, 278
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	173
AxyI	CCTNAGG	2 cut(s)	48, 117
BanI	GGYRCC	2 cut(s)	10, 148
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	348
BmiI	GGNNCC	2 cut(s)	12, 150
BmsI	GCATC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 264, 382
Bse118I	RCCGGY	1 cut(s)	158
Bse21I	CCTNAGG	2 cut(s)	48, 117
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	3 cut(s)	158, 264, 382
BseMII	CTCAG	5 cut(s)	39, 44, 71, 108, 387
BseXI	GCAGC	1 cut(s)	358
BseYI	CCCAGC	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	365
BshNI	GGYRCC	2 cut(s)	10, 148
BsiSI	CCGG	2 cut(s)	152, 159
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	158, 264, 382
BsmFI	GGGAC	1 cut(s)	184
BspCNI	CTCAG	5 cut(s)	40, 43, 70, 109, 388
BspLI	GGNNCC	2 cut(s)	12, 150
BspMAI	CTGCAG	1 cut(s)	319
BspT107I	GGYRCC	2 cut(s)	10, 148
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	5 cut(s)	30, 48, 57, 117, 396
BstDSI	CCRYGG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	8, 155, 397
BstNSI	RCATGY	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	358
Bsu36I	CCTNAGG	2 cut(s)	48, 117
BtgI	CCRYGG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	4
Cfr10I	RCCGGY	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	62
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	3 cut(s)	77, 145, 325
CviJI	RGCY	3 cut(s)	158, 349, 391
CviKI_1	RGCY	3 cut(s)	158, 349, 391
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	5 cut(s)	30, 48, 57, 117, 396
Eco57I	CTGAAG	1 cut(s)	120
Eco81I	CCTNAGG	2 cut(s)	48, 117
FaeI	CATG	3 cut(s)	80, 148, 328
FaiI	YATR	7 cut(s)	71, 78, 146, 197, 326, 381, 383
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	3 cut(s)	76, 144, 324
FauNDI	CATATG	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	347
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	3
GluI	GCNGC	1 cut(s)	347
GsaI	CCCAGC	1 cut(s)	379
HapII	CCGG	2 cut(s)	152, 159
HhaI	GCGC	1 cut(s)	4
Hin1II	CATG	3 cut(s)	80, 148, 328
Hin6I	GCGC	1 cut(s)	2
HinP1I	GCGC	1 cut(s)	2
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	2 cut(s)	176, 305
HpaII	CCGG	2 cut(s)	152, 159
HphI	GGTGA	1 cut(s)	173
Hpy188III	TCNNGA	3 cut(s)	98, 140, 275
HpyAV	CCTTC	2 cut(s)	95, 314
HpyCH4V	TGCA	2 cut(s)	317, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	8, 155, 397
HpyF3I	CTNAG	5 cut(s)	30, 48, 57, 117, 396
Hsp92II	CATG	3 cut(s)	80, 148, 328
HspAI	GCGC	1 cut(s)	2
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	203
MluCI	AATT	2 cut(s)	87, 253
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	109, 282
MnlI	CCTC	4 cut(s)	43, 74, 112, 322
MseI	TTAA	2 cut(s)	86, 414
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	2 cut(s)	152, 159
MwoI	GCNNNNNNNGC	3 cut(s)	8, 155, 397
NdeI	CATATG	1 cut(s)	381
NlaIII	CATG	3 cut(s)	80, 148, 328
NlaIV	GGNNCC	2 cut(s)	12, 150
NspI	RCATGY	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	305
PflMI	CCANNNNNTGG	2 cut(s)	264, 382
PkrI	GCNGC	1 cut(s)	348
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	12, 150
PstI	CTGCAG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	86, 414
SatI	GCNGC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	170
SetI	ASST	7 cut(s)	54, 63, 70, 85, 118, 314, 393
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	329
SphI	GCATGC	1 cut(s)	328
Sse9I	AATT	2 cut(s)	87, 253
SspMI	CTAG	1 cut(s)	203
TaqI	TCGA	2 cut(s)	174, 308
TasI	AATT	2 cut(s)	87, 253
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	86, 414
Tru9I	TTAA	2 cut(s)	86, 414
TseI	GCWGC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	312, 354
TspGWI	ACGGA	1 cut(s)	255
Van91I	CCANNNNNTGG	2 cut(s)	264, 382
XceI	RCATGY	1 cut(s)	328
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.