Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012798

Physical Location & Seq

Genomic Coordinates Forward (+)

22822803 .. 22823750

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG251300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTCCAACGTCTTCAAGGTATGGAGCAGCGGCAGCAACAGATGATGTCATTCCTTGCAAAGGCTGTGCAGAGCCCCGGTTTCTTGAATCAGTTTGTACAGCAGCAAAATGATAGCAATAGGCGCATAACTGAAGCCAATAAGAAAAGGAGACTCAGAGAGGAAGGAATTGCTGAAAACGAGCGTTCTGATACTCCTGATGGACAGATTGTTAAGTATCAGCCTCCAATGAATGAAGCGGCAAAGGCAATGCTCAGGCAGATGATGAAAACAAATACTTCTTCCCAGCTGGATTCTTTTAGCAACAATCTTGAGAATTTTTTGATTGGTGAGGGTTCATCATCATCCAGTGCAGTAGACAGTGGTAGCTCTTCAAGCCATGTCTCGGGAGCTACACTTCAAGAGGTCCCGCCTACTTCAGGGCGTGGACCGTTAACTGCAATTTCAGAAATAGAATCTTCTCTCAAGGCTACAACCTCAGGAGAAGTTATGAGAGATCCATTGTCAGATATCAATGTCCTCATTGGAGCGCAAGAGGCACCAGCACTTCCTATTTCTCAGGCAGATGTAATCCCTGAGGTTTCTCAGGTACAAGGTATGGCACATGGAGGTTTAATTGATATTCCTGAAGGAAACACAAAACCTGAGGCAGATGTTGGATTTATTCAAGATATGGCACCTGAAGCCGGTGATGGATTTATCGACTCCACGGCATTTGATTTTATGTCCCTAGATGTTGATAGTTTTCCCCCTGATGCTGACATTGACGCATTGCTTGACAATTCCAACTTGTGGGATTTTCTTGAACAAAGTCCTGTGCCAGATGAAATGGATTCGACCTCTGCAGAAGGCATGCCTGTGGGAAATGAAGTGCAGCCGACAGAGAATGGATGGGATAAAACCCAGCATATGGATAAGCTTACTGAGCAAATGGGAAATCTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

315

Amino Acids

34.17

Weight (kDa)

4.27

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32330 AT1G32330
fragaria_vesca	FvH4_5g22720
malus_domestica	MD06G1037900.v1.1 MD16G1271200.v1.1
prunus_persica	Prupe.5G031100_v2.0.a1
pyrus_communis	pycom16g24070
rosa_chinensis	RchiOBHm_Chr7g0211291
rosa_laevigata	RLG00000003012
rosa_multiflora	Rmu_co8434101.1_g000001 Rmu_sc0001226.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247950
rosa_rugosa	Rorug07G0124900
rosa_samantha	Rh7AG257200 Rh7BG251300 Rh7CG274000 Rh7DG264600
rosa_wichuraiana	Rw7G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	538, 676
AccB7I	CCANNNNNTGG	2 cut(s)	792, 910
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	3 cut(s)	31, 239, 410
AclWI	GGATC	1 cut(s)	491
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	4 cut(s)	153, 402, 648, 702
AfaI	GTAC	2 cut(s)	99, 591
AfiI	CCNNNNNNNGG	6 cut(s)	61, 385, 419, 686, 792, 910
AgsI	TTSAA	6 cut(s)	17, 88, 375, 401, 668, 806
AluBI	AGCT	4 cut(s)	289, 369, 392, 919
AluI	AGCT	4 cut(s)	289, 369, 392, 919
Alw26I	GTCTC	2 cut(s)	145, 388
AlwI	GGATC	1 cut(s)	491
Ama87I	CYCGRG	1 cut(s)	385
ApeKI	GCWGC	4 cut(s)	28, 34, 103, 874
ApoI	RAATTY	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	126, 532
AspS9I	GGNCC	3 cut(s)	4, 406, 428
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	341, 701
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	3 cut(s)	4, 406, 428
AxyI	CCTNAGG	3 cut(s)	478, 576, 645
BanI	GGYRCC	2 cut(s)	538, 676
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	40, 46, 115, 886
BccI	CCATC	3 cut(s)	194, 686, 885
BceAI	ACGGC	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	145, 388
BfaI	CTAG	1 cut(s)	731
BfmI	CTRYAG	1 cut(s)	843
BisI	GCNGC	6 cut(s)	29, 32, 35, 104, 240, 875
BlsI	GCNGC	6 cut(s)	30, 33, 36, 105, 241, 876
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	3 cut(s)	4, 406, 428
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	3 cut(s)	4, 406, 428
BmiI	GGNNCC	3 cut(s)	408, 540, 678
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	745
BpiI	GAAGAC	1 cut(s)	5
Bpu10I	CCTNAGC	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	332, 449
BpuMI	CCSGG	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	76, 708
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 385, 419, 686, 792, 910
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	1 cut(s)	348
Bse21I	CCTNAGG	3 cut(s)	478, 576, 645
Bse3DI	GCAATG	2 cut(s)	255, 770
BseDI	CCNNGG	2 cut(s)	76, 708
BseGI	GGATG	2 cut(s)	344, 896
BseLI	CCNNNNNNNGG	6 cut(s)	61, 385, 419, 686, 792, 910
BseMI	GCAATG	2 cut(s)	255, 770
BseMII	CTCAG	8 cut(s)	169, 268, 492, 567, 572, 599, 636, 915
BseNI	ACTGG	1 cut(s)	348
BseXI	GCAGC	4 cut(s)	40, 46, 115, 886
BseYI	CCCAGC	2 cut(s)	285, 903
BsgI	GTGCAG	3 cut(s)	89, 372, 893
BshNI	GGYRCC	2 cut(s)	538, 676
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	78, 687
BslFI	GGGAC	2 cut(s)	392, 712
BslI	CCNNNNNNNGG	6 cut(s)	61, 385, 419, 686, 792, 910
BsmAI	GTCTC	2 cut(s)	145, 388
BsmFI	GGGAC	2 cut(s)	392, 712
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	496
BspACI	CCGC	3 cut(s)	31, 239, 410
BspCNI	CTCAG	8 cut(s)	168, 267, 491, 568, 571, 598, 637, 916
BspLI	GGNNCC	3 cut(s)	408, 540, 678
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	1 cut(s)	491
BspQI	GCTCTTC	1 cut(s)	376
BspT107I	GGYRCC	2 cut(s)	538, 676
BsrDI	GCAATG	2 cut(s)	255, 770
BsrFI	RCCGGY	1 cut(s)	686
BsrGI	TGTACA	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	2 cut(s)	76, 708
BssMI	GATC	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	362, 432
Bst6I	CTCTTC	1 cut(s)	376
BstAUI	TGTACA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	854
BstDEI	CTNAG	8 cut(s)	155, 254, 478, 558, 576, 585, 645, 924
BstDSI	CCRYGG	1 cut(s)	708
BstENI	CCTNNNNNAGG	2 cut(s)	59, 417
BstF5I	GGATG	2 cut(s)	344, 896
BstHHI	GCGC	2 cut(s)	126, 532
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	2 cut(s)	145, 388
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 123, 245, 375, 536, 683, 925
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	843
BstV1I	GCAGC	4 cut(s)	40, 46, 115, 886
BstV2I	GAAGAC	1 cut(s)	5
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
Bsu36I	CCTNAGG	3 cut(s)	478, 576, 645
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	344, 896
BtsIMutI	CAGTG	2 cut(s)	355, 367
Cac8I	GCNNGC	1 cut(s)	854
CfoI	GCGC	2 cut(s)	126, 532
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	3 cut(s)	4, 406, 428
CseI	GACGC	1 cut(s)	776
Csp6I	GTAC	2 cut(s)	98, 590
CspCI	CAANNNNNGTGG	2 cut(s)	697, 732
CviAII	CATG	3 cut(s)	380, 605, 853
CviQI	GTAC	2 cut(s)	98, 590
DdeI	CTNAG	8 cut(s)	155, 254, 478, 558, 576, 585, 645, 924
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	3 cut(s)	4, 406, 428
Eco57I	CTGAAG	4 cut(s)	153, 402, 648, 702
Eco81I	CCTNAGG	3 cut(s)	478, 576, 645
Eco88I	CYCGRG	1 cut(s)	385
EcoNI	CCTNNNNNAGG	2 cut(s)	59, 417
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	77
FaeI	CATG	3 cut(s)	383, 608, 856
FaqI	GGGAC	2 cut(s)	392, 712
FatI	CATG	3 cut(s)	379, 604, 852
FauI	CCCGC	1 cut(s)	417
FauNDI	CATATG	1 cut(s)	909
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	6 cut(s)	29, 32, 35, 104, 240, 875
FokI	GGATG	2 cut(s)	331, 903
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	6 cut(s)	29, 32, 35, 104, 240, 875
FspBI	CTAG	1 cut(s)	731
GlaI	GCGC	2 cut(s)	125, 531
GluI	GCNGC	6 cut(s)	29, 32, 35, 104, 240, 875
GsaI	CCCAGC	2 cut(s)	289, 907
HapII	CCGG	2 cut(s)	78, 687
HgaI	GACGC	1 cut(s)	776
HhaI	GCGC	2 cut(s)	126, 532
Hin1II	CATG	3 cut(s)	383, 608, 856
Hin6I	GCGC	2 cut(s)	124, 530
HinP1I	GCGC	2 cut(s)	124, 530
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	917
HinfI	GANTC	6 cut(s)	88, 153, 293, 455, 704, 833
HpaI	GTTAAC	1 cut(s)	435
HpaII	CCGG	2 cut(s)	78, 687
HphI	GGTGA	2 cut(s)	341, 701
Hpy166II	GTNNAC	3 cut(s)	358, 428, 435
Hpy188I	TCNGA	4 cut(s)	158, 190, 448, 508
Hpy188III	TCNNGA	9 cut(s)	85, 197, 311, 387, 401, 480, 626, 668, 803
Hpy8I	GTNNAC	3 cut(s)	358, 428, 435
HpyAV	CCTTC	3 cut(s)	158, 623, 842
HpyCH4III	ACNGT	2 cut(s)	362, 432
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	6 cut(s)	59, 70, 353, 440, 845, 874
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 123, 245, 375, 536, 683, 925
HpyF3I	CTNAG	8 cut(s)	155, 254, 478, 558, 576, 585, 645, 924
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	3 cut(s)	383, 608, 856
HspAI	GCGC	2 cut(s)	124, 530
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	496
LguI	GCTCTTC	1 cut(s)	376
LmnI	GCTCC	3 cut(s)	25, 389, 527
Lsp1109I	GCAGC	4 cut(s)	40, 46, 115, 886
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	1 cut(s)	10
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	4 cut(s)	5, 273, 363, 450
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	5 cut(s)	168, 316, 441, 615, 781
MlyI	GAGTC	2 cut(s)	147, 698
MmeI	TCCRAC	3 cut(s)	31, 637, 810
MseI	TTAA	4 cut(s)	213, 434, 614, 942
MslI	CAYNNNNRTG	1 cut(s)	857
MspA1I	CMGCKG	2 cut(s)	31, 289
MspI	CCGG	2 cut(s)	78, 687
MspR9I	CCNGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	7 cut(s)	34, 123, 245, 375, 536, 683, 925
NciI	CCSGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	909
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	3 cut(s)	383, 608, 856
NlaIV	GGNNCC	3 cut(s)	408, 540, 678
NspI	RCATGY	1 cut(s)	856
PaeI	GCATGC	1 cut(s)	856
PciSI	GCTCTTC	1 cut(s)	376
PfeI	GAWTC	4 cut(s)	88, 293, 455, 833
PflMI	CCANNNNNTGG	2 cut(s)	792, 910
PkrI	GCNGC	6 cut(s)	30, 33, 36, 105, 241, 876
PleI	GAGTC	2 cut(s)	147, 698
PpsI	GAGTC	2 cut(s)	147, 698
PpuMI	RGGWCCY	1 cut(s)	406
Psp5II	RGGWCCY	1 cut(s)	406
PspFI	CCCAGC	2 cut(s)	285, 903
PspN4I	GGNNCC	3 cut(s)	408, 540, 678
PspPI	GGNCC	3 cut(s)	4, 406, 428
PspPPI	RGGWCCY	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	2 cut(s)	99, 591
RsaNI	GTAC	2 cut(s)	98, 590
RseI	CAYNNNNRTG	1 cut(s)	857
SapI	GCTCTTC	1 cut(s)	376
SaqAI	TTAA	4 cut(s)	213, 434, 614, 942
SatI	GCNGC	6 cut(s)	29, 32, 35, 104, 240, 875
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	3 cut(s)	4, 406, 428
SchI	GAGTC	2 cut(s)	147, 698
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	3 cut(s)	4, 406, 428
SmiMI	CAYNNNNRTG	1 cut(s)	857
SmlI	CTYRAG	2 cut(s)	311, 464
SmoI	CTYRAG	2 cut(s)	311, 464
SphI	GCATGC	1 cut(s)	856
Sse9I	AATT	5 cut(s)	168, 316, 441, 615, 781
SsiI	CCGC	3 cut(s)	31, 239, 410
SspMI	CTAG	1 cut(s)	731
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	362, 432
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	702, 836
TasI	AATT	5 cut(s)	168, 316, 441, 615, 781
TatI	WGTACW	1 cut(s)	97
TauI	GCSGC	2 cut(s)	34, 242
TfiI	GAWTC	4 cut(s)	88, 293, 455, 833
Tru1I	TTAA	4 cut(s)	213, 434, 614, 942
Tru9I	TTAA	4 cut(s)	213, 434, 614, 942
TscAI	CASTG	2 cut(s)	355, 367
TseI	GCWGC	4 cut(s)	28, 34, 103, 874
TspDTI	ATGAA	6 cut(s)	245, 249, 281, 327, 840, 882
TspRI	CASTG	2 cut(s)	355, 367
Van91I	CCANNNNNTGG	2 cut(s)	792, 910
VpaK11BI	GGWCC	3 cut(s)	4, 406, 428
XagI	CCTNNNNNAGG	2 cut(s)	59, 417
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	856
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.