Rmu_co8467605.1_g000001

aminotransferase ACS12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8467605.1
OG0015320
Physical Location & Seq
Forward (+)
1 .. 1616
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8467605.1_g000001.1.cds

Sequence Viewer

Length: 1152 bp
ctgtgttttgatttgattgagaaatgggtgtcggagaattggacggagtcgatattgggaaccaacggtggtgatttgagcattgccgggattgcggcgtaccagccgtttgatggatttgctgagctgaaagtggctatggctaatttcatgtcccaggtgatgcgaagatcagtgccatttgatccgtcgcaactagtgttaacagctggtgcaaccccggcagttgagatattgagtttctgcttagcagaccatggaaatgcatttcttgttcccacgccgtattatccgggttttgaccgggatttgagatggcgaacaggagtggagcttattcccgttcactgtcgcagcactgataacttcactttaaatataaccgttcttgaacaagcatacagtcaggctagaaaacgaggggtgaaagtacagggaattctaatttctaacccttcgaatcctgttggcaatttagtttcaagggaaacactgtgcagtcttgtagactttgcccaagagaagaacattcatattatctctgatgagatctttgctgggtctatgtatggaagcgaggagtttgtgagcatggcagaaattgttgagacagaagattttgagaagaacagagttcacataatatatgggttatcaaaggacctatctattccgggctttaggattggggttatatattcatataatgatagtgttctggccgctgccaaaaggttaacaagattttctcccatttctgctccgacgcagcgccttattatttcaatgctcttggatactggattcattcaggaatacctagacatcaacaaaagaaggatacaacatatgtacgatttatttgtggatggtttgcaacaattaggaatcaagtgtgcaaagagcagtgctggtttatactgttgggccgatatgagtgggttaattccctcctatggtgagaaaggggaactcgaattatgggataacctgctgaacattgccaagatcaacgtgactcctgggtcagcctgccactgcatagaaccaggatggttcaggtgttgttttaccagcttgatgcctgaggatgttcctgtagttatagatcgaatccgaaaagttactgaaacaattaaatcttccggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

383

Amino Acids

42.62

Weight (kDa)

5.2

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015320)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51690 AT5G51690
fragaria_vesca FvH4_7g28260
malus_domestica MD01G1186400.v1.1
prunus_persica Prupe.2G283100_v2.0.a1
pyrus_communis pycom01g19800
rosa_chinensis RchiOBHm_Chr1g0375231
rosa_laevigata RLG00000026677
rosa_multiflora Rmu_co8467605.1_g000001
rosa_roxburghii Rroxscaffold_4G00282920
rosa_rugosa Rorug01G0389200
rosa_samantha Rh1AG399900 Rh1BG364500 Rh1CG377500 Rh1DG395100
rosa_wichuraiana Rw1G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1024
Acc36I ACCTGC 1 cut(s) 999
AccI GTMKAC 1 cut(s) 507
AciI CCGC 2 cut(s) 95, 723
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 1 cut(s) 438
AfaI GTAC 3 cut(s) 101, 432, 854
AfiI CCNNNNNNNGG 2 cut(s) 113, 956
AgsI TTSAA 3 cut(s) 392, 483, 786
AhlI ACTAGT 1 cut(s) 196
AjnI CCWGG 3 cut(s) 156, 1021, 1048
AluBI AGCT 4 cut(s) 127, 209, 334, 1077
AluI AGCT 4 cut(s) 127, 209, 334, 1077
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 1 cut(s) 179
AoxI GGCC 2 cut(s) 720, 927
ApeKI GCWGC 3 cut(s) 354, 725, 769
ApoI RAATTY 1 cut(s) 438
AspLEI GCGC 1 cut(s) 774
AspS9I GGNCC 2 cut(s) 661, 927
AsuC2I CCSGG 5 cut(s) 88, 221, 294, 305, 675
AsuHPI GGTGA 4 cut(s) 83, 172, 436, 971
AsuII TTCGAA 1 cut(s) 458
AvaII GGWCC 1 cut(s) 661
AxyI CCTNAGG 1 cut(s) 1086
BbvI GCAGC 3 cut(s) 366, 712, 781
BccI CCATC 4 cut(s) 107, 309, 863, 1047
BceAI ACGGC 2 cut(s) 91, 268
BciT130I CCWGG 3 cut(s) 158, 1023, 1050
BciVI GTATCC 2 cut(s) 790, 834
BcnI CCSGG 5 cut(s) 88, 221, 294, 305, 675
BcoDI GTCTC 1 cut(s) 602
BcuI ACTAGT 1 cut(s) 196
BfaI CTAG 3 cut(s) 197, 411, 821
BfmI CTRYAG 1 cut(s) 1098
BfoI RGCGCY 1 cut(s) 775
BfuAI ACCTGC 1 cut(s) 999
BfuI GTATCC 2 cut(s) 790, 834
BglII AGATCT 1 cut(s) 549
BisI GCNGC 5 cut(s) 96, 355, 723, 726, 770
BlpI GCTNAGC 2 cut(s) 123, 247
BlsI GCNGC 5 cut(s) 97, 356, 724, 727, 771
Bme1390I CCNGG 8 cut(s) 88, 158, 221, 294, 305, 675, 1023, 1050
Bme18I GGWCC 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 661, 927
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 8 cut(s) 88, 158, 221, 294, 305, 675, 1023, 1050
BmsI GCATC 2 cut(s) 153, 1071
Bpu1102I GCTNAGC 2 cut(s) 123, 247
Bpu14I TTCGAA 1 cut(s) 458
BpuMI CCSGG 5 cut(s) 88, 221, 294, 305, 675
BsaJI CCNNGG 4 cut(s) 156, 219, 256, 1022
BsaWI WCCGGW 1 cut(s) 1145
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 956
Bse1I ACTGG 1 cut(s) 805
Bse21I CCTNAGG 1 cut(s) 1086
Bse3DI GCAATG 2 cut(s) 81, 999
BseBI CCWGG 3 cut(s) 158, 1023, 1050
BseDI CCNNGG 4 cut(s) 156, 219, 256, 1022
BseGI GGATG 3 cut(s) 874, 1058, 1096
BseLI CCNNNNNNNGG 2 cut(s) 113, 956
BseMI GCAATG 2 cut(s) 81, 999
BseMII CTCAG 2 cut(s) 114, 1077
BseNI ACTGG 1 cut(s) 805
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 3 cut(s) 366, 712, 781
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 1 cut(s) 517
BshFI GGCC 2 cut(s) 722, 929
BsiSI CCGG 6 cut(s) 87, 221, 293, 304, 674, 1146
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 113, 956
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 2 cut(s) 722, 929
Bsp119I TTCGAA 1 cut(s) 458
Bsp143I GATC 5 cut(s) 170, 184, 549, 1008, 1108
Bsp1720I GCTNAGC 2 cut(s) 123, 247
Bsp19I CCATGG 1 cut(s) 256
BspACI CCGC 2 cut(s) 95, 723
BspANI GGCC 2 cut(s) 722, 929
BspCNI CTCAG 2 cut(s) 115, 1078
BspLI GGNNCC 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 999
BspPI GGATC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 458
BsrDI GCAATG 2 cut(s) 81, 999
BsrI ACTGG 1 cut(s) 805
BssECI CCNNGG 4 cut(s) 156, 219, 256, 1022
BssMI GATC 5 cut(s) 170, 184, 549, 1008, 1108
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 3 cut(s) 158, 1023, 1050
Bst4CI ACNGT 6 cut(s) 68, 350, 385, 404, 495, 923
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 1033
BstDEI CTNAG 3 cut(s) 123, 247, 1086
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 3 cut(s) 874, 1058, 1096
BstH2I RGCGCY 1 cut(s) 775
BstHHI GCGC 1 cut(s) 774
BstKTI GATC 5 cut(s) 173, 187, 552, 1011, 1111
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 5 cut(s) 170, 184, 549, 1008, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 92, 221
BstNI CCWGG 3 cut(s) 158, 1023, 1050
BstSCI CCNGG 8 cut(s) 86, 156, 219, 292, 303, 673, 1021, 1048
BstSFI CTRYAG 1 cut(s) 1098
BstV1I GCAGC 3 cut(s) 366, 712, 781
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 1086
BsuI GTATCC 2 cut(s) 790, 834
BsuRI GGCC 2 cut(s) 722, 929
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 3 cut(s) 874, 1058, 1096
BtsI GCAGTG 2 cut(s) 913, 1036
BtsIMutI CAGTG 6 cut(s) 180, 346, 357, 491, 913, 1036
BveI ACCTGC 1 cut(s) 999
Cac8I GCNNGC 1 cut(s) 1033
CfoI GCGC 1 cut(s) 774
Cfr13I GGNCC 2 cut(s) 661, 927
CseI GACGC 1 cut(s) 775
Csp6I GTAC 3 cut(s) 100, 431, 853
CviAII CATG 3 cut(s) 151, 257, 592
CviQI GTAC 3 cut(s) 100, 431, 853
DdeI CTNAG 3 cut(s) 123, 247, 1086
DpnI GATC 5 cut(s) 172, 186, 551, 1010, 1110
DpnII GATC 5 cut(s) 170, 184, 549, 1008, 1108
DraI TTTAAA 1 cut(s) 375
DrdI GACNNNNNNGTC 1 cut(s) 1024
DseDI GACNNNNNNGTC 1 cut(s) 1024
EaeI YGGCCR 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 661
Eco81I CCTNAGG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 661
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 3 cut(s) 156, 1021, 1048
EcoT14I CCWWGG 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 3 cut(s) 154, 260, 595
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 150, 256, 591
FauNDI CATATG 1 cut(s) 849
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 5 cut(s) 96, 355, 723, 726, 770
FokI GGATG 3 cut(s) 881, 1065, 1103
Fsp4HI GCNGC 5 cut(s) 96, 355, 723, 726, 770
FspBI CTAG 3 cut(s) 197, 411, 821
GlaI GCGC 1 cut(s) 773
GluI GCNGC 5 cut(s) 96, 355, 723, 726, 770
GsaI CCCAGC 1 cut(s) 561
HaeII RGCGCY 1 cut(s) 775
HaeIII GGCC 2 cut(s) 722, 929
HapII CCGG 6 cut(s) 87, 221, 293, 304, 674, 1146
HgaI GACGC 1 cut(s) 775
HhaI GCGC 1 cut(s) 774
Hin1II CATG 3 cut(s) 154, 260, 595
Hin6I GCGC 1 cut(s) 772
HinP1I GCGC 1 cut(s) 772
HincII GTYRAC 2 cut(s) 204, 738
HindII GTYRAC 2 cut(s) 204, 738
HinfI GANTC 6 cut(s) 47, 460, 804, 888, 1018, 1113
HpaI GTTAAC 2 cut(s) 204, 738
HpaII CCGG 6 cut(s) 87, 221, 293, 304, 674, 1146
HphI GGTGA 4 cut(s) 83, 172, 436, 971
Hpy166II GTNNAC 5 cut(s) 204, 346, 508, 637, 738
Hpy188I TCNGA 4 cut(s) 34, 544, 765, 1118
Hpy188III TCNNGA 2 cut(s) 389, 812
Hpy8I GTNNAC 5 cut(s) 204, 346, 508, 637, 738
Hpy99I CGWCG 2 cut(s) 193, 769
HpyAV CCTTC 2 cut(s) 465, 831
HpyCH4III ACNGT 6 cut(s) 68, 350, 385, 404, 495, 923
HpyCH4IV ACGT 1 cut(s) 1014
HpyCH4V TGCA 6 cut(s) 215, 266, 498, 877, 899, 1041
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 221
HpyF3I CTNAG 3 cut(s) 123, 247, 1086
HpySE526I ACGT 1 cut(s) 1014
Hsp92II CATG 3 cut(s) 154, 260, 595
HspAI GCGC 1 cut(s) 772
KspAI GTTAAC 2 cut(s) 204, 738
Kzo9I GATC 5 cut(s) 170, 184, 549, 1008, 1108
LmnI GCTCC 2 cut(s) 331, 766
Lsp1109I GCAGC 3 cut(s) 366, 712, 781
LweI GCATC 2 cut(s) 153, 1071
MaeI CTAG 3 cut(s) 197, 411, 821
MaeII ACGT 1 cut(s) 1014
MaeIII GTNAC 2 cut(s) 1015, 1123
MalI GATC 5 cut(s) 172, 186, 551, 1010, 1110
MboI GATC 5 cut(s) 170, 184, 549, 1008, 1108
MboII GAAGA 5 cut(s) 180, 535, 626, 637, 1134
MflI RGATCY 1 cut(s) 549
MlyI GAGTC 2 cut(s) 56, 1012
MmeI TCCRAC 2 cut(s) 12, 788
MnlI CCTC 4 cut(s) 413, 571, 961, 1081
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 5 cut(s) 203, 374, 737, 944, 1137
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 209, 725
MspI CCGG 6 cut(s) 87, 221, 293, 304, 674, 1146
MspR9I CCNGG 8 cut(s) 88, 158, 221, 294, 305, 675, 1023, 1050
MvaI CCWGG 3 cut(s) 158, 1023, 1050
MwoI GCNNNNNNNGC 2 cut(s) 92, 221
NciI CCSGG 5 cut(s) 88, 221, 294, 305, 675
NcoI CCATGG 1 cut(s) 256
NdeI CATATG 1 cut(s) 849
NdeII GATC 5 cut(s) 170, 184, 549, 1008, 1108
NlaIII CATG 3 cut(s) 154, 260, 595
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 1015
NsiI ATGCAT 1 cut(s) 268
NspV TTCGAA 1 cut(s) 458
PfeI GAWTC 4 cut(s) 460, 804, 888, 1113
PflFI GACNNNGTC 1 cut(s) 46
PkrI GCNGC 5 cut(s) 97, 356, 724, 727, 771
PleI GAGTC 2 cut(s) 55, 1012
PpsI GAGTC 2 cut(s) 55, 1012
PpuMI RGGWCCY 1 cut(s) 661
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 3 cut(s) 156, 1021, 1048
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 3 cut(s) 156, 1021, 1048
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 661, 927
PspPPI RGGWCCY 1 cut(s) 661
PsuI RGATCY 1 cut(s) 549
PsyI GACNNNGTC 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 3 cut(s) 101, 432, 854
RsaNI GTAC 3 cut(s) 100, 431, 853
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 5 cut(s) 203, 374, 737, 944, 1137
SatI GCNGC 5 cut(s) 96, 355, 723, 726, 770
Sau3AI GATC 5 cut(s) 170, 184, 549, 1008, 1108
Sau96I GGNCC 2 cut(s) 661, 927
SchI GAGTC 2 cut(s) 56, 1012
ScrFI CCNGG 8 cut(s) 88, 158, 221, 294, 305, 675, 1023, 1050
SfaNI GCATC 2 cut(s) 153, 1071
SfcI CTRYAG 1 cut(s) 1098
SfuI TTCGAA 1 cut(s) 458
SinI GGWCC 1 cut(s) 661
SmiMI CAYNNNNRTG 1 cut(s) 261
SpeI ACTAGT 1 cut(s) 196
SsiI CCGC 2 cut(s) 95, 723
SspMI CTAG 3 cut(s) 197, 411, 821
StyD4I CCNGG 8 cut(s) 86, 156, 219, 292, 303, 673, 1021, 1048
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 6 cut(s) 68, 350, 385, 404, 495, 923
TaiI ACGT 1 cut(s) 1017
TaqI TCGA 4 cut(s) 50, 458, 975, 1111
TatI WGTACW 1 cut(s) 430
TauI GCSGC 2 cut(s) 98, 725
TfiI GAWTC 4 cut(s) 460, 804, 888, 1113
Tru1I TTAA 5 cut(s) 203, 374, 737, 944, 1137
Tru9I TTAA 5 cut(s) 203, 374, 737, 944, 1137
TscAI CASTG 6 cut(s) 180, 353, 364, 498, 913, 1043
TseFI GTSAC 1 cut(s) 1015
TseI GCWGC 3 cut(s) 354, 725, 769
Tsp45I GTSAC 1 cut(s) 1015
TspDTI ATGAA 4 cut(s) 139, 521, 690, 796
TspGWI ACGGA 2 cut(s) 59, 177
TspRI CASTG 6 cut(s) 180, 353, 364, 498, 913, 1043
Tth111I GACNNNGTC 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 661
XapI RAATTY 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 3 cut(s) 197, 411, 821
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.