Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474817.1

Orthogroup ID

OG0005122

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1394

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 844 bp

tagaggcttggattcaaggctttctaaggatcttccttctgatcttcagaagcttcgttgcaaggttgcttttcatgcattgaggtttgctcctccaattttgggaattggtaacgagcttgcagagaggatgcgtagcaagggaccctaccttgcccttcatctaagaatggagaaggatgtatgggtgaggactggttgccttcctggtctgagtcatgaatacgatgagatagtaaacagcgaaaggacacaacggcctgagctcctaactgcaagatcaaacatgacttaccatgaaagaaaacttgctggtctctgccccttgaacgccgtggaagtgactaggttgctaaaagctctaggagctcctaaagatgcaagaatatattgggctggaggggagccattgggtggaagagaagccttgctaccattaacccgggagttttcccatttttacaataaggaagatcttgcattgcctggtgagctagaaccttttgcaaaaagagcttctgtcatggctgccattgattacatagtttctgagaacagtgatgtcttcatgccatctcatggaggaaatatgggccatgcactccagggacaacgtgcctatgctggtcacaagaagtatataacaccagacaaaaggcatatgcttccttattttctggacactttgctccctgaagtagagtttaataggatcataaaggagttgcacagtgattccttagggcagccagacattcggattagtaaagttggaagagatgttacaaagtatcccatcccggagtgtatgtgcagtgattctcatgctcatccccacttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

280

Amino Acids

31.55

Weight (kDa)

8.53

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44500 AT2G44500 AT3G07900
fragaria_vesca	FvH4_7g00280 FvH4_7g00280 FvH4_7g00280 FvH4_7g00280 FvH4_7g00280 FvH4_7g00280
malus_domestica	MD02G1317900.v1.1 MD07G1003500.v1.1 MD07G1003800.v1.1 MD07G1004400.v1.1
prunus_persica	Prupe.2G005200_v2.0.a1 Prupe.2G005200_v2.0.a1
pyrus_communis	pycom02g26610
rosa_chinensis	RchiOBHm_Chr1g0314081
rosa_laevigata	RLG00000030698 RLG00000030777
rosa_multiflora	Rmu_co8474817.1_g000001 Rmu_ssc0000154.1_g000027
rosa_roxburghii	Rroxscaffold_4G00332080
rosa_rugosa	RorugPtG0006200.1
rosa_samantha	Rh1AG008500 Rh1BG002000 Rh1BG013000 Rh1CG009300 Rh1DG004300 Rh1DG013100
rosa_wichuraiana	Rw1G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	414, 579
AclWI	GGATC	2 cut(s)	37, 720
AcuI	CTGAAG	2 cut(s)	30, 715
AfiI	CCNNNNNNNGG	3 cut(s)	102, 414, 579
AgsI	TTSAA	2 cut(s)	16, 329
AjnI	CCWGG	3 cut(s)	206, 485, 604
AluBI	AGCT	7 cut(s)	53, 119, 266, 360, 369, 494, 516
AluI	AGCT	7 cut(s)	53, 119, 266, 360, 369, 494, 516
Alw21I	GWGCWC	2 cut(s)	268, 371
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	37, 720
Ama87I	CYCGRG	1 cut(s)	442
AoxI	GGCC	2 cut(s)	258, 593
ApeKI	GCWGC	2 cut(s)	528, 746
AspS9I	GGNCC	2 cut(s)	144, 593
AsuC2I	CCSGG	3 cut(s)	443, 444, 801
AsuHPI	GGTGA	2 cut(s)	200, 501
AvaI	CYCGRG	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	144
AxyI	CCTNAGG	1 cut(s)	740
BanII	GRGCYC	2 cut(s)	268, 371
BarI	GAAGNNNNNNTAC	4 cut(s)	415, 447, 767, 799
BbsI	GAAGAC	1 cut(s)	557
Bbv12I	GWGCWC	2 cut(s)	268, 371
BbvI	GCAGC	2 cut(s)	515, 758
BccI	CCATC	2 cut(s)	581, 804
BceAI	ACGGC	2 cut(s)	273, 318
BciT130I	CCWGG	3 cut(s)	208, 487, 606
BciVI	GTATCC	1 cut(s)	802
BcnI	CCSGG	3 cut(s)	443, 444, 801
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	3 cut(s)	346, 363, 495
BfuI	GTATCC	1 cut(s)	802
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	2 cut(s)	529, 747
BlsI	GCNGC	2 cut(s)	530, 748
Bme1390I	CCNGG	6 cut(s)	208, 443, 444, 487, 606, 801
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	144, 593
BmiI	GGNNCC	3 cut(s)	145, 146, 406
BmrFI	CCNGG	6 cut(s)	208, 443, 444, 487, 606, 801
BmsI	GCATC	2 cut(s)	121, 368
BpiI	GAAGAC	1 cut(s)	557
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
BpmI	CTGGAG	2 cut(s)	418, 588
Bpu10I	CCTNAGC	1 cut(s)	262
BpuMI	CCSGG	3 cut(s)	443, 444, 801
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	334, 442, 605
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 414, 579
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	740
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	3 cut(s)	208, 487, 606
BseDI	CCNNGG	3 cut(s)	334, 442, 605
BseGI	GGATG	4 cut(s)	136, 185, 796, 830
BseLI	CCNNNNNNNGG	3 cut(s)	102, 414, 579
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	3 cut(s)	204, 253, 541
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	515, 758
BsgI	GTGCAG	1 cut(s)	833
BshFI	GGCC	2 cut(s)	260, 595
BsiHKAI	GWGCWC	2 cut(s)	268, 371
BsiHKCI	CYCGRG	1 cut(s)	442
BsiSI	CCGG	2 cut(s)	443, 801
BslFI	GGGAC	2 cut(s)	157, 622
BslI	CCNNNNNNNGG	3 cut(s)	102, 414, 579
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	157, 622
BsnI	GGCC	2 cut(s)	260, 595
Bso31I	GGTCTC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	268, 371
Bsp143I	GATC	5 cut(s)	29, 41, 279, 473, 712
BspANI	GGCC	2 cut(s)	260, 595
BspCNI	CTCAG	3 cut(s)	205, 254, 542
BspHI	TCATGA	1 cut(s)	218
BspLI	GGNNCC	3 cut(s)	145, 146, 406
BspPI	GGATC	2 cut(s)	37, 720
BspTNI	GGTCTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	334, 442, 605
BssMI	GATC	5 cut(s)	29, 41, 279, 473, 712
Bst2UI	CCWGG	3 cut(s)	208, 487, 606
Bst4CI	ACNGT	2 cut(s)	558, 732
Bst6I	CTCTTC	2 cut(s)	413, 770
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	6 cut(s)	25, 165, 213, 262, 550, 740
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	4 cut(s)	136, 185, 796, 830
BstKTI	GATC	5 cut(s)	32, 44, 282, 476, 715
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	5 cut(s)	29, 41, 279, 473, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 366, 491, 513
BstNI	CCWGG	3 cut(s)	208, 487, 606
BstSCI	CCNGG	6 cut(s)	206, 441, 442, 485, 604, 799
BstV1I	GCAGC	2 cut(s)	515, 758
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	2 cut(s)	29, 473
BstYI	RGATCY	2 cut(s)	29, 473
Bsu36I	CCTNAGG	1 cut(s)	740
BsuI	GTATCC	1 cut(s)	802
BsuRI	GGCC	2 cut(s)	260, 595
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	4 cut(s)	136, 185, 796, 830
BtsI	GCAGTG	1 cut(s)	821
BtsIMutI	CAGTG	3 cut(s)	563, 737, 821
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	144, 593
Cfr9I	CCCGGG	1 cut(s)	442
CviAII	CATG	9 cut(s)	75, 219, 287, 297, 524, 569, 579, 597, 825
DdeI	CTNAG	6 cut(s)	25, 165, 213, 262, 550, 740
DpnI	GATC	5 cut(s)	31, 43, 281, 475, 714
DpnII	GATC	5 cut(s)	29, 41, 279, 473, 712
Eam1104I	CTCTTC	2 cut(s)	413, 770
EarI	CTCTTC	2 cut(s)	413, 770
Ecl136II	GAGCTC	2 cut(s)	266, 369
Eco24I	GRGCYC	2 cut(s)	268, 371
Eco31I	GGTCTC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	144
Eco53kI	GAGCTC	2 cut(s)	266, 369
Eco57I	CTGAAG	2 cut(s)	30, 715
Eco81I	CCTNAGG	1 cut(s)	740
Eco88I	CYCGRG	1 cut(s)	442
EcoICRI	GAGCTC	2 cut(s)	266, 369
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	3 cut(s)	206, 485, 604
EcoT22I	ATGCAT	1 cut(s)	80
EcoT38I	GRGCYC	2 cut(s)	268, 371
FaeI	CATG	9 cut(s)	78, 222, 290, 300, 527, 572, 582, 600, 828
FaqI	GGGAC	2 cut(s)	157, 622
FatI	CATG	9 cut(s)	74, 218, 286, 296, 523, 568, 578, 596, 824
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	2 cut(s)	529, 747
FokI	GGATG	4 cut(s)	143, 192, 783, 817
FriOI	GRGCYC	2 cut(s)	268, 371
Fsp4HI	GCNGC	2 cut(s)	529, 747
FspBI	CTAG	3 cut(s)	346, 363, 495
GluI	GCNGC	2 cut(s)	529, 747
GsuI	CTGGAG	2 cut(s)	418, 588
HaeIII	GGCC	2 cut(s)	260, 595
HapII	CCGG	2 cut(s)	443, 801
Hin1II	CATG	9 cut(s)	78, 222, 290, 300, 527, 572, 582, 600, 828
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	4 cut(s)	12, 215, 735, 819
HpaII	CCGG	2 cut(s)	443, 801
HphI	GGTGA	2 cut(s)	200, 501
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	5 cut(s)	41, 49, 214, 551, 760
Hpy188III	TCNNGA	2 cut(s)	219, 678
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	4 cut(s)	46, 168, 170, 213
HpyCH4III	ACNGT	2 cut(s)	558, 732
HpyCH4IV	ACGT	1 cut(s)	614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 366, 491, 513
HpyF3I	CTNAG	6 cut(s)	25, 165, 213, 262, 550, 740
HpySE526I	ACGT	1 cut(s)	614
Hsp92II	CATG	9 cut(s)	78, 222, 290, 300, 527, 572, 582, 600, 828
KflI	GGGWCCC	1 cut(s)	144
Kzo9I	GATC	5 cut(s)	29, 41, 279, 473, 712
LmnI	GCTCC	6 cut(s)	95, 271, 366, 374, 404, 694
Lsp1109I	GCAGC	2 cut(s)	515, 758
LweI	GCATC	2 cut(s)	121, 368
MaeI	CTAG	3 cut(s)	346, 363, 495
MaeII	ACGT	1 cut(s)	614
MaeIII	GTNAC	4 cut(s)	111, 341, 627, 782
MalI	GATC	5 cut(s)	31, 43, 281, 475, 714
MboI	GATC	5 cut(s)	29, 41, 279, 473, 712
MboII	GAAGA	6 cut(s)	24, 36, 430, 483, 557, 787
MflI	RGATCY	2 cut(s)	29, 473
MhlI	GDGCHC	2 cut(s)	268, 371
MluCI	AATT	2 cut(s)	97, 106
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	6 cut(s)	76, 103, 121, 184, 393, 576
Mph1103I	ATGCAT	1 cut(s)	80
MseI	TTAA	2 cut(s)	438, 706
MspI	CCGG	2 cut(s)	443, 801
MspR9I	CCNGG	6 cut(s)	208, 443, 444, 487, 606, 801
MvaI	CCWGG	3 cut(s)	208, 487, 606
MwoI	GCNNNNNNNGC	4 cut(s)	75, 366, 491, 513
NciI	CCSGG	3 cut(s)	443, 444, 801
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	5 cut(s)	29, 41, 279, 473, 712
NlaIII	CATG	9 cut(s)	78, 222, 290, 300, 527, 572, 582, 600, 828
NlaIV	GGNNCC	3 cut(s)	145, 146, 406
NmuCI	GTSAC	2 cut(s)	341, 627
NsiI	ATGCAT	1 cut(s)	80
PagI	TCATGA	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	12, 735, 819
PflMI	CCANNNNNTGG	2 cut(s)	414, 579
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	2 cut(s)	530, 748
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	144
Psp124BI	GAGCTC	2 cut(s)	268, 371
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	3 cut(s)	206, 485, 604
PspGI	CCWGG	3 cut(s)	206, 485, 604
PspN4I	GGNNCC	3 cut(s)	145, 146, 406
PspPI	GGNCC	2 cut(s)	144, 593
PspPPI	RGGWCCY	1 cut(s)	144
PsuI	RGATCY	2 cut(s)	29, 473
SacI	GAGCTC	2 cut(s)	268, 371
SaqAI	TTAA	2 cut(s)	438, 706
SatI	GCNGC	2 cut(s)	529, 747
Sau3AI	GATC	5 cut(s)	29, 41, 279, 473, 712
Sau96I	GGNCC	2 cut(s)	144, 593
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	6 cut(s)	208, 443, 444, 487, 606, 801
SduI	GDGCHC	2 cut(s)	268, 371
SfaNI	GCATC	2 cut(s)	121, 368
SinI	GGWCC	1 cut(s)	144
SmaI	CCCGGG	1 cut(s)	444
Sse9I	AATT	2 cut(s)	97, 106
SspMI	CTAG	3 cut(s)	346, 363, 495
SstI	GAGCTC	2 cut(s)	268, 371
StyD4I	CCNGG	6 cut(s)	206, 441, 442, 485, 604, 799
TaaI	ACNGT	2 cut(s)	558, 732
TaiI	ACGT	1 cut(s)	617
TasI	AATT	2 cut(s)	97, 106
TfiI	GAWTC	3 cut(s)	12, 735, 819
Tru1I	TTAA	2 cut(s)	438, 706
Tru9I	TTAA	2 cut(s)	438, 706
TscAI	CASTG	3 cut(s)	563, 737, 821
TseFI	GTSAC	2 cut(s)	341, 627
TseI	GCWGC	2 cut(s)	528, 746
Tsp45I	GTSAC	2 cut(s)	341, 627
TspDTI	ATGAA	5 cut(s)	63, 150, 235, 313, 557
TspMI	CCCGGG	1 cut(s)	442
TspRI	CASTG	3 cut(s)	563, 737, 821
Van91I	CCANNNNNTGG	2 cut(s)	414, 579
VpaK11BI	GGWCC	1 cut(s)	144
XmaI	CCCGGG	1 cut(s)	442
XspI	CTAG	3 cut(s)	346, 363, 495
Zsp2I	ATGCAT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.