Rh1BG002000

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005122
Physical Location & Seq
Forward (+)
297258 .. 301810
4553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG002000.1

Sequence Viewer

Length: 1242 bp
ATGGCCAAGTCAAAAAGCAACAAGAACAAGGTCTCTTACATTTCAGTCCCTTCTCAGATAATCAATTCTTTGTCTGCATCTTCTCTTCAATCCCTCCTTACCTCACCCAAGAAATCATGTTCAAGGAGCAAAGCAAGGTACTTGAGCTTGCTGACCAAGTACAGAAGCCCAAGTTTCTGGGTTTTCTTCCTCTTCCTCTTTGGAATTCTTGGTATGCTCAAGTTGGGATTTAATTTAAACACTCTGATCCCTTATTCTCCTTACCCATGCGCCACAAGCCAGTTCCACGCCTTGGTCTCCTCAAATGGGTATTTGAAATCACACATGAGTATTGCCTCAAACGAAAATGGTCAGAAAGCTGAGGTCTTTGACAGTTTGAGCCATTCGCTTCCCTTGATTCTAAAGGAGAAGGGGGAGGAGCCCAAATCAGAACCAAACAGTGACAAGGCAATAAGTGACTTCTGGAAGCAACCAGATGGTTTGGGGTATAGGCCATGCTTGGATTTCACCCGGGACTATCAGAAGGCGAGTGTAGTGACAGTGAAGGACAGGACTAAATACCTAATGGTTGTGGTTGCTGGAGGGCTGAACCAACAAAGGAACCAGATTGTTGATGCTGTGGTTATTGCTAGGATTCTTGGGGCAGCTTTGGTCGTTCCCATTTTGCAAGTCAATGTCATCTGGGGAGATGAAAGTGAATTTTCTGATATATTTGATATGGAGCACTTCAAAAAAGTTCTTGCTAATGATGTCCGTATAGTTTCTTCACTGCCATCAACACATATAATGACAAGGCCAGTGGAGGAGAAACGGACTCCTCTTCATGTTTCTCCTAGTTGGATCCGGTCACGCTATCTCAAGCGGATTAAAAGAGAAGGAGTTTTGCTTCTTAGAGGCTTGGATTCAAGGCTTTCTAAGGATCTTCCTTCTGATCTTCAGAAGCTTCGTTGCAAGGTTGCTTTTCATGCATTGAGGTTTGCTCCTCCAATTTTGGGAATTGGTAACAAGCTTGCGGAGAGGATGCGTAGCAAGGGACCCTACCTTGCCCTTCATCTAAGAATGGAGAAGGATGTATGGGTGAGGACTGGTTGCCTACCTGGTCTGAGTCATGAATACGATGAGATGGTAAACAGCGAAAGGATACAACGGCCTGAGCTCCTAACTGCAAGATCAAACATGACTTACCATGAAAGAAAACTTGCTGGTCTCTGCCCCTTGAACGCCGTGGAAGTGACTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

413

Amino Acids

46.61

Weight (kDa)

9.75

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 187 - 410 1.3e-59 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 292
AciI CCGC 2 cut(s) 862, 1013
AclWI GGATC 4 cut(s) 241, 835, 848, 927
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 204, 698
AcuI CTGAAG 1 cut(s) 920
AfaI GTAC 2 cut(s) 140, 161
AfiI CCNNNNNNNGG 3 cut(s) 292, 306, 992
AgsI TTSAA 6 cut(s) 89, 123, 316, 730, 906, 1219
AjnI CCWGG 1 cut(s) 1096
AluBI AGCT 6 cut(s) 147, 359, 647, 943, 1009, 1156
AluI AGCT 6 cut(s) 147, 359, 647, 943, 1009, 1156
Alw21I GWGCWC 2 cut(s) 726, 1158
Alw26I GTCTC 3 cut(s) 37, 301, 1211
AlwI GGATC 4 cut(s) 241, 835, 848, 927
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 4 cut(s) 3, 491, 794, 1148
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 2 cut(s) 204, 698
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 1034
AsuC2I CCSGG 2 cut(s) 511, 512
AsuHPI GGTGA 3 cut(s) 96, 499, 1090
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 1 cut(s) 1034
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 840
BanII GRGCYC 2 cut(s) 423, 1158
BarI GAAGNNNNNNTAC 2 cut(s) 748, 780
Bbv12I GWGCWC 2 cut(s) 726, 1158
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 656
BccI CCATC 3 cut(s) 470, 781, 1117
BceAI ACGGC 2 cut(s) 1163, 1208
BciT130I CCWGG 1 cut(s) 1098
BciVI GTATCC 1 cut(s) 1134
BcnI CCSGG 2 cut(s) 511, 512
BcoDI GTCTC 3 cut(s) 37, 301, 1211
BfaI CTAG 3 cut(s) 630, 834, 1236
BfuI GTATCC 1 cut(s) 1134
BisI GCNGC 1 cut(s) 645
BlsI GCNGC 1 cut(s) 646
Bme1390I CCNGG 3 cut(s) 511, 512, 1098
Bme18I GGWCC 1 cut(s) 1034
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 1034
BmiI GGNNCC 5 cut(s) 420, 602, 842, 1035, 1036
BmrFI CCNGG 3 cut(s) 511, 512, 1098
BmsI GCATC 3 cut(s) 86, 604, 1011
BplI GAGNNNNNCTC 2 cut(s) 964, 996
BpmI CTGGAG 1 cut(s) 600
Bpu10I CCTNAGC 2 cut(s) 360, 1152
BpuEI CTTGAG 3 cut(s) 163, 203, 842
BpuMI CCSGG 2 cut(s) 511, 512
BsaI GGTCTC 3 cut(s) 37, 301, 1211
BsaJI CCNNGG 3 cut(s) 291, 510, 1224
BsaWI WCCGGW 1 cut(s) 843
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 306, 992
Bse1I ACTGG 3 cut(s) 280, 797, 1090
BseBI CCWGG 1 cut(s) 1098
BseDI CCNNGG 3 cut(s) 291, 510, 1224
BseGI GGATG 2 cut(s) 1026, 1075
BseLI CCNNNNNNNGG 3 cut(s) 292, 306, 992
BseMII CTCAG 4 cut(s) 68, 351, 1094, 1143
BseNI ACTGG 3 cut(s) 280, 797, 1090
BseRI GAGGAG 5 cut(s) 289, 431, 807, 818, 972
BseXI GCAGC 1 cut(s) 656
BshFI GGCC 4 cut(s) 5, 493, 796, 1150
BsiHKAI GWGCWC 2 cut(s) 726, 1158
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 2 cut(s) 511, 844
BslFI GGGAC 3 cut(s) 32, 527, 1047
BslI CCNNNNNNNGG 3 cut(s) 292, 306, 992
BsmAI GTCTC 3 cut(s) 37, 301, 1211
BsmFI GGGAC 3 cut(s) 32, 527, 1047
BsnI GGCC 4 cut(s) 5, 493, 796, 1150
Bso31I GGTCTC 3 cut(s) 37, 301, 1211
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 3 cut(s) 423, 726, 1158
Bsp143I GATC 5 cut(s) 246, 840, 919, 931, 1169
BspACI CCGC 2 cut(s) 862, 1013
BspANI GGCC 4 cut(s) 5, 493, 796, 1150
BspCNI CTCAG 4 cut(s) 67, 352, 1095, 1144
BspHI TCATGA 1 cut(s) 1108
BspLI GGNNCC 5 cut(s) 420, 602, 842, 1035, 1036
BspPI GGATC 4 cut(s) 241, 835, 848, 927
BspTNI GGTCTC 3 cut(s) 37, 301, 1211
BsrI ACTGG 3 cut(s) 280, 797, 1090
BssECI CCNNGG 3 cut(s) 291, 510, 1224
BssMI GATC 5 cut(s) 246, 840, 919, 931, 1169
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 1098
Bst4CI ACNGT 3 cut(s) 374, 440, 541
Bst6I CTCTTC 3 cut(s) 90, 197, 825
BstC8I GCNNGC 2 cut(s) 149, 1011
BstDEI CTNAG 7 cut(s) 54, 360, 890, 915, 1055, 1103, 1152
BstDSI CCRYGG 1 cut(s) 1224
BstF5I GGATG 2 cut(s) 1026, 1075
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 5 cut(s) 249, 843, 922, 934, 1172
BstMAI GTCTC 3 cut(s) 37, 301, 1211
BstMBI GATC 5 cut(s) 246, 840, 919, 931, 1169
BstMWI GCNNNNNNNGC 2 cut(s) 276, 965
BstNI CCWGG 1 cut(s) 1098
BstSCI CCNGG 3 cut(s) 509, 510, 1096
BstV1I GCAGC 1 cut(s) 656
BstX2I RGATCY 2 cut(s) 840, 919
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 2 cut(s) 840, 919
BsuI GTATCC 1 cut(s) 1134
BsuRI GGCC 4 cut(s) 5, 493, 796, 1150
BtgI CCRYGG 1 cut(s) 1224
BtsCI GGATG 2 cut(s) 1026, 1075
BtsI GCAGTG 1 cut(s) 767
BtsIMutI CAGTG 4 cut(s) 445, 546, 767, 804
Cac8I GCNNGC 2 cut(s) 149, 1011
CciI TCATGA 1 cut(s) 1108
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 1034
Cfr9I CCCGGG 1 cut(s) 510
CsiI ACCWGGT 1 cut(s) 1096
Csp6I GTAC 2 cut(s) 139, 160
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 9 cut(s) 117, 267, 325, 495, 824, 965, 1109, 1177, 1187
CviQI GTAC 2 cut(s) 139, 160
DdeI CTNAG 7 cut(s) 54, 360, 890, 915, 1055, 1103, 1152
DpnI GATC 5 cut(s) 248, 842, 921, 933, 1171
DpnII GATC 5 cut(s) 246, 840, 919, 931, 1169
DraI TTTAAA 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 90, 197, 825
EarI CTCTTC 3 cut(s) 90, 197, 825
Ecl136II GAGCTC 1 cut(s) 1156
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 2 cut(s) 423, 1158
Eco31I GGTCTC 3 cut(s) 37, 301, 1211
Eco47I GGWCC 1 cut(s) 1034
Eco53kI GAGCTC 1 cut(s) 1156
Eco57I CTGAAG 1 cut(s) 920
Eco88I CYCGRG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 1156
EcoO109I RGGNCCY 1 cut(s) 1034
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 1096
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 970
EcoT38I GRGCYC 2 cut(s) 423, 1158
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 9 cut(s) 120, 270, 328, 498, 827, 968, 1112, 1180, 1190
FaqI GGGAC 3 cut(s) 32, 527, 1047
FatI CATG 9 cut(s) 116, 266, 324, 494, 823, 964, 1108, 1176, 1186
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 2 cut(s) 1033, 1082
FriOI GRGCYC 2 cut(s) 423, 1158
Fsp4HI GCNGC 1 cut(s) 645
FspBI CTAG 3 cut(s) 630, 834, 1236
GlaI GCGC 1 cut(s) 271
GluI GCNGC 1 cut(s) 645
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 4 cut(s) 5, 493, 796, 1150
HapII CCGG 2 cut(s) 511, 844
HhaI GCGC 1 cut(s) 272
Hin1II CATG 9 cut(s) 120, 270, 328, 498, 827, 968, 1112, 1180, 1190
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HindIII AAGCTT 2 cut(s) 941, 1007
HinfI GANTC 5 cut(s) 397, 634, 814, 902, 1105
HpaII CCGG 2 cut(s) 511, 844
HphI GGTGA 3 cut(s) 96, 499, 1090
Hpy166II GTNNAC 1 cut(s) 1129
Hpy188I TCNGA 9 cut(s) 57, 246, 354, 430, 522, 706, 931, 939, 1104
Hpy188III TCNNGA 2 cut(s) 463, 1109
Hpy8I GTNNAC 1 cut(s) 1129
HpyAV CCTTC 8 cut(s) 60, 403, 517, 538, 869, 936, 1058, 1060
HpyCH4III ACNGT 3 cut(s) 374, 440, 541
HpyCH4V TGCA 5 cut(s) 77, 667, 951, 968, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 276, 965
HpyF3I CTNAG 7 cut(s) 54, 360, 890, 915, 1055, 1103, 1152
Hsp92II CATG 9 cut(s) 120, 270, 328, 498, 827, 968, 1112, 1180, 1190
HspAI GCGC 1 cut(s) 270
KflI GGGWCCC 1 cut(s) 1034
Kzo9I GATC 5 cut(s) 246, 840, 919, 931, 1169
LmnI GCTCC 5 cut(s) 126, 418, 721, 985, 1161
Lsp1109I GCAGC 1 cut(s) 656
LweI GCATC 3 cut(s) 86, 604, 1011
MabI ACCWGGT 1 cut(s) 1096
MaeI CTAG 3 cut(s) 630, 834, 1236
MaeIII GTNAC 6 cut(s) 440, 455, 535, 846, 1001, 1231
MalI GATC 5 cut(s) 248, 842, 921, 933, 1171
MboI GATC 5 cut(s) 246, 840, 919, 931, 1169
MboII GAAGA 8 cut(s) 72, 77, 178, 184, 756, 812, 914, 926
MflI RGATCY 2 cut(s) 840, 919
MhlI GDGCHC 3 cut(s) 423, 726, 1158
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 64, 204, 232, 698, 987, 996
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 808, 1114
MmeI TCCRAC 1 cut(s) 818
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 970
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 231, 236, 867
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 511, 844
MspR9I CCNGG 3 cut(s) 511, 512, 1098
MvaI CCWGG 1 cut(s) 1098
MwoI GCNNNNNNNGC 2 cut(s) 276, 965
NciI CCSGG 2 cut(s) 511, 512
NdeII GATC 5 cut(s) 246, 840, 919, 931, 1169
NlaIII CATG 9 cut(s) 120, 270, 328, 498, 827, 968, 1112, 1180, 1190
NlaIV GGNNCC 5 cut(s) 420, 602, 842, 1035, 1036
NmuCI GTSAC 5 cut(s) 440, 455, 535, 846, 1231
NsiI ATGCAT 1 cut(s) 970
PagI TCATGA 1 cut(s) 1108
PfeI GAWTC 3 cut(s) 397, 634, 902
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 1 cut(s) 646
PleI GAGTC 2 cut(s) 808, 1113
PpsI GAGTC 2 cut(s) 808, 1113
PpuMI RGGWCCY 1 cut(s) 1034
Psp124BI GAGCTC 1 cut(s) 1158
Psp5II RGGWCCY 1 cut(s) 1034
Psp6I CCWGG 1 cut(s) 1096
PspGI CCWGG 1 cut(s) 1096
PspN4I GGNNCC 5 cut(s) 420, 602, 842, 1035, 1036
PspPI GGNCC 1 cut(s) 1034
PspPPI RGGWCCY 1 cut(s) 1034
PsuI RGATCY 2 cut(s) 840, 919
RsaI GTAC 2 cut(s) 140, 161
RsaNI GTAC 2 cut(s) 139, 160
SacI GAGCTC 1 cut(s) 1158
SaqAI TTAA 3 cut(s) 231, 236, 867
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 5 cut(s) 246, 840, 919, 931, 1169
Sau96I GGNCC 1 cut(s) 1034
SchI GAGTC 2 cut(s) 808, 1114
ScrFI CCNGG 3 cut(s) 511, 512, 1098
SduI GDGCHC 3 cut(s) 423, 726, 1158
SexAI ACCWGGT 1 cut(s) 1096
SfaNI GCATC 3 cut(s) 86, 604, 1011
SinI GGWCC 1 cut(s) 1034
SmaI CCCGGG 1 cut(s) 512
SmlI CTYRAG 3 cut(s) 142, 218, 857
SmoI CTYRAG 3 cut(s) 142, 218, 857
Sse9I AATT 6 cut(s) 64, 204, 232, 698, 987, 996
SsiI CCGC 2 cut(s) 862, 1013
SspMI CTAG 3 cut(s) 630, 834, 1236
SstI GAGCTC 1 cut(s) 1158
StyD4I CCNGG 3 cut(s) 509, 510, 1096
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 3 cut(s) 374, 440, 541
TasI AATT 6 cut(s) 64, 204, 232, 698, 987, 996
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 3 cut(s) 397, 634, 902
Tru1I TTAA 3 cut(s) 231, 236, 867
Tru9I TTAA 3 cut(s) 231, 236, 867
TscAI CASTG 4 cut(s) 445, 546, 774, 804
TseFI GTSAC 5 cut(s) 440, 455, 535, 846, 1231
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 5 cut(s) 440, 455, 535, 846, 1231
TspDTI ATGAA 6 cut(s) 705, 812, 953, 1040, 1125, 1203
TspGWI ACGGA 2 cut(s) 743, 826
TspMI CCCGGG 1 cut(s) 510
TspRI CASTG 4 cut(s) 445, 546, 774, 804
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 1034
XapI RAATTY 2 cut(s) 204, 698
XmaI CCCGGG 1 cut(s) 510
XspI CTAG 3 cut(s) 630, 834, 1236
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.