Rmu_co8478551.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8478551.1
OG0013666
Physical Location & Seq
Reverse (-)
2 .. 965
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8478551.1_g000001.1.cds

Sequence Viewer

Length: 964 bp
atgcctgtaaatccatggaccttcctcttcttcttaaccctctcttctattcttctggttcactttcctgctctggccttgaaccaacaaggccaggctcttgtttcatggaagcagagtctcaatggctcccctgaggggctgagcaattgggacccaagtgatgaaactccatgcgggtggtccggggtcacctgcaacttcaacaaccaagttgcggagctgaatttgaagtatattgatcttctaggtaaggtgccctggaatttcacttcgttgctgaccctaaacaagctcatcttgtccggcacaaacctcaccggctcaatcccacgagaaatctctactcttaaacaactgacctcactggacctgagcgacaatgcactgagcggcgaaatcccagttgagatctgccagctgcctaagctcgaagaactctacctcagcacgaaccggctggagggctcaatcccagtcgaaatcggaaacctcacaaacctgaagcggctggttctctacgacaatcagctcagcgggaaaattcctagcaccattggaaatctgcctcaacttcaagtaatcagagctggagggaacaagaaccttgaaggtcctgtgcctcatgagattgggaactgcaccgatttggtcatgttgggcttagcagaaaccagcatttccggcttcctccctccaagccttggcctcctcaaaaaactcgagacattggcaatctacaccaccctcgtctccggtcccatcccccaagagctcggagactgcaccgagctccgggacatctacttgtacgaaaactccattagcggctctgttccaagcaaattaggcaacttgaaaaatcttcaaaaccttctgctatggcaaaacagcgttgtaggggttcttccaccggagctcggcaattgtcaccagctattggtcattgacatttctatgaatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

321

Amino Acids

34.95

Weight (kDa)

4.79

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013666)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05780 FvH4_5g05780 FvH4_5g05780
malus_domestica MD06G1170200.v1.1
prunus_persica Prupe.5G169700_v2.0.a1
pyrus_communis pycom06g15160
rosa_chinensis RchiOBHm_Chr7g0193041
rosa_laevigata RLG00000004301
rosa_multiflora Rmu_co8431803.1_g000001 Rmu_co8478551.1_g000001 Rmu_sc0002040.1_g000078
rosa_roxburghii Rroxscaffold_3G00262440
rosa_rugosa Rorug07G0007300
rosa_samantha Rh7AG132300 Rh7BG133200 Rh7CG136300 Rh7DG134200
rosa_wichuraiana Rw7G011290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 256
AccB7I CCANNNNNTGG 2 cut(s) 704, 940
AccBSI CCGCTC 1 cut(s) 393
AciI CCGC 6 cut(s) 177, 218, 393, 508, 537, 828
AcsI RAATTY 3 cut(s) 226, 265, 543
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 1 cut(s) 812
AfiI CCNNNNNNNGG 7 cut(s) 138, 217, 463, 704, 795, 920, 940
AgsI TTSAA 7 cut(s) 82, 205, 232, 578, 611, 859, 869
AjnI CCWGG 2 cut(s) 93, 260
Alw21I GWGCWC 3 cut(s) 777, 795, 921
Alw26I GTCTC 4 cut(s) 125, 719, 757, 774
Ama87I CYCGRG 1 cut(s) 722
AoxI GGCC 3 cut(s) 75, 91, 706
ApeKI GCWGC 1 cut(s) 421
ApoI RAATTY 3 cut(s) 226, 265, 543
AspS9I GGNCC 6 cut(s) 18, 154, 183, 370, 614, 758
AsuC2I CCSGG 2 cut(s) 187, 797
AsuHPI GGTGA 3 cut(s) 184, 310, 923
AvaI CYCGRG 1 cut(s) 722
AvaII GGWCC 6 cut(s) 18, 154, 183, 370, 614, 758
AxyI CCTNAGG 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 4 cut(s) 470, 777, 795, 921
BarI GAAGNNNNNNTAC 2 cut(s) 891, 923
BauI CACGAG 1 cut(s) 333
Bbv12I GWGCWC 3 cut(s) 777, 795, 921
BbvCI CCTCAGC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 408
BccI CCATC 1 cut(s) 770
BciT130I CCWGG 2 cut(s) 95, 262
BcnI CCSGG 2 cut(s) 187, 797
BcoDI GTCTC 4 cut(s) 125, 719, 757, 774
BfaI CTAG 2 cut(s) 248, 549
BfuAI ACCTGC 1 cut(s) 203
BglII AGATCT 1 cut(s) 411
BisI GCNGC 4 cut(s) 394, 422, 509, 829
BlpI GCTNAGC 3 cut(s) 143, 533, 664
BlsI GCNGC 4 cut(s) 395, 423, 510, 830
Bme1390I CCNGG 4 cut(s) 95, 187, 262, 797
Bme18I GGWCC 6 cut(s) 18, 154, 183, 370, 614, 758
BmeT110I CYCGRG 1 cut(s) 722
BmgT120I GGNCC 6 cut(s) 18, 154, 183, 370, 614, 758
BmiI GGNNCC 5 cut(s) 130, 155, 156, 258, 760
BmrFI CCNGG 4 cut(s) 95, 187, 262, 797
BmrI ACTGGG 2 cut(s) 398, 470
BmuI ACTGGG 2 cut(s) 398, 470
BpmI CTGGAG 2 cut(s) 482, 612
Bpu10I CCTNAGC 3 cut(s) 374, 426, 446
Bpu1102I GCTNAGC 3 cut(s) 143, 533, 664
BpuMI CCSGG 2 cut(s) 187, 797
BsaJI CCNNGG 4 cut(s) 14, 186, 260, 703
BsaWI WCCGGW 2 cut(s) 755, 913
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 7 cut(s) 138, 217, 463, 704, 795, 920, 940
Bse118I RCCGGY 2 cut(s) 320, 456
Bse1I ACTGG 3 cut(s) 372, 404, 476
Bse21I CCTNAGG 1 cut(s) 135
BseBI CCWGG 2 cut(s) 95, 262
BseDI CCNNGG 4 cut(s) 14, 186, 260, 703
BseGI GGATG 1 cut(s) 762
BseLI CCNNNNNNNGG 7 cut(s) 138, 217, 463, 704, 795, 920, 940
BseMII CTCAG 6 cut(s) 126, 134, 365, 380, 460, 547
BseNI ACTGG 3 cut(s) 372, 404, 476
BseRI GAGGAG 1 cut(s) 701
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 1 cut(s) 408
BsgI GTGCAG 2 cut(s) 625, 769
BshFI GGCC 3 cut(s) 77, 93, 708
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 3 cut(s) 777, 795, 921
BsiHKCI CYCGRG 1 cut(s) 722
BsiSI CCGG 8 cut(s) 186, 306, 321, 457, 684, 756, 796, 914
BslFI GGGAC 3 cut(s) 167, 744, 812
BslI CCNNNNNNNGG 7 cut(s) 138, 217, 463, 704, 795, 920, 940
BsmAI GTCTC 4 cut(s) 125, 719, 757, 774
BsmBI CGTCTC 1 cut(s) 757
BsmFI GGGAC 3 cut(s) 167, 744, 812
BsnI GGCC 3 cut(s) 77, 93, 708
BsoBI CYCGRG 1 cut(s) 722
Bsp1286I GDGCHC 5 cut(s) 261, 470, 777, 795, 921
Bsp143I GATC 2 cut(s) 241, 411
Bsp1720I GCTNAGC 3 cut(s) 143, 533, 664
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 6 cut(s) 177, 218, 393, 508, 537, 828
BspANI GGCC 3 cut(s) 77, 93, 708
BspCNI CTCAG 6 cut(s) 127, 135, 366, 381, 459, 546
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 5 cut(s) 130, 155, 156, 258, 760
BspMI ACCTGC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 256
BsrBI CCGCTC 1 cut(s) 393
BsrFI RCCGGY 2 cut(s) 320, 456
BsrI ACTGG 3 cut(s) 372, 404, 476
BssAI RCCGGY 2 cut(s) 320, 456
BssECI CCNNGG 4 cut(s) 14, 186, 260, 703
BssMI GATC 2 cut(s) 241, 411
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 2 cut(s) 14, 703
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 95, 262
Bst6I CTCTTC 2 cut(s) 32, 49
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 8 cut(s) 135, 143, 374, 389, 426, 446, 533, 664
BstDSI CCRYGG 1 cut(s) 14
BstEII GGTNACC 1 cut(s) 190
BstF5I GGATG 1 cut(s) 762
BstKTI GATC 2 cut(s) 244, 414
BstMAI GTCTC 4 cut(s) 125, 719, 757, 774
BstMBI GATC 2 cut(s) 241, 411
BstMWI GCNNNNNNNGC 3 cut(s) 427, 684, 849
BstNI CCWGG 2 cut(s) 95, 262
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 4 cut(s) 93, 185, 260, 795
BstSLI GKGCMC 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 411
BstXI CCANNNNNNTGG 1 cut(s) 180
BstYI RGATCY 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 3 cut(s) 77, 93, 708
BtgI CCRYGG 1 cut(s) 14
BtsCI GGATG 1 cut(s) 762
BtsIMutI CAGTG 2 cut(s) 365, 386
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 419
CciI TCATGA 1 cut(s) 625
Cfr10I RCCGGY 2 cut(s) 320, 456
Cfr13I GGNCC 6 cut(s) 18, 154, 183, 370, 614, 758
Csp6I GTAC 1 cut(s) 811
CviAII CATG 5 cut(s) 15, 108, 174, 626, 655
CviQI GTAC 1 cut(s) 811
DdeI CTNAG 8 cut(s) 135, 143, 374, 389, 426, 446, 533, 664
DpnI GATC 2 cut(s) 243, 413
DpnII GATC 2 cut(s) 241, 411
Eam1104I CTCTTC 2 cut(s) 32, 49
EarI CTCTTC 2 cut(s) 32, 49
Ecl136II GAGCTC 3 cut(s) 775, 793, 919
Eco130I CCWWGG 2 cut(s) 14, 703
Eco24I GRGCYC 4 cut(s) 470, 777, 795, 921
Eco47I GGWCC 6 cut(s) 18, 154, 183, 370, 614, 758
Eco53kI GAGCTC 3 cut(s) 775, 793, 919
Eco57I CTGAAG 1 cut(s) 524
Eco81I CCTNAGG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 722
Eco91I GGTNACC 1 cut(s) 190
EcoICRI GAGCTC 3 cut(s) 775, 793, 919
EcoO109I RGGNCCY 2 cut(s) 154, 614
EcoO65I GGTNACC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 93, 260
EcoT14I CCWWGG 2 cut(s) 14, 703
EcoT38I GRGCYC 4 cut(s) 470, 777, 795, 921
ErhI CCWWGG 2 cut(s) 14, 703
Esp3I CGTCTC 1 cut(s) 757
FaeI CATG 5 cut(s) 18, 111, 177, 629, 658
FaiI YATR 8 cut(s) 16, 109, 175, 237, 627, 656, 883, 959
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 3 cut(s) 167, 744, 812
FatI CATG 5 cut(s) 14, 107, 173, 625, 654
FauI CCCGC 2 cut(s) 170, 530
Fnu4HI GCNGC 4 cut(s) 394, 422, 509, 829
FokI GGATG 1 cut(s) 749
FriOI GRGCYC 4 cut(s) 470, 777, 795, 921
Fsp4HI GCNGC 4 cut(s) 394, 422, 509, 829
FspBI CTAG 2 cut(s) 248, 549
GluI GCNGC 4 cut(s) 394, 422, 509, 829
GsuI CTGGAG 2 cut(s) 482, 612
HaeIII GGCC 3 cut(s) 77, 93, 708
HapII CCGG 8 cut(s) 186, 306, 321, 457, 684, 756, 796, 914
Hin1II CATG 5 cut(s) 18, 111, 177, 629, 658
HinfI GANTC 1 cut(s) 118
HpaII CCGG 8 cut(s) 186, 306, 321, 457, 684, 756, 796, 914
HphI GGTGA 3 cut(s) 184, 310, 923
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 3 cut(s) 488, 587, 779
Hpy188III TCNNGA 2 cut(s) 626, 724
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 31, 605, 884
HpyCH4V TGCA 4 cut(s) 198, 386, 642, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 427, 684, 849
HpyF3I CTNAG 8 cut(s) 135, 143, 374, 389, 426, 446, 533, 664
Hsp92II CATG 5 cut(s) 18, 111, 177, 629, 658
KflI GGGWCCC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 241, 411
LmnI GCTCC 4 cut(s) 134, 220, 798, 916
Lsp1109I GCAGC 1 cut(s) 408
MaeI CTAG 2 cut(s) 248, 549
MaeIII GTNAC 2 cut(s) 190, 929
MalI GATC 2 cut(s) 243, 413
MbiI CCGCTC 1 cut(s) 393
MboI GATC 2 cut(s) 241, 411
MboII GAAGA 8 cut(s) 19, 22, 36, 44, 236, 446, 857, 899
MfeI CAATTG 2 cut(s) 148, 925
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 5 cut(s) 261, 470, 777, 795, 921
MluCI AATT 6 cut(s) 148, 226, 265, 543, 845, 925
MlyI GAGTC 1 cut(s) 127
MseI TTAA 2 cut(s) 35, 351
MslI CAYNNNNRTG 2 cut(s) 178, 956
MspA1I CMGCKG 2 cut(s) 421, 537
MspI CCGG 8 cut(s) 186, 306, 321, 457, 684, 756, 796, 914
MspR9I CCNGG 4 cut(s) 95, 187, 262, 797
MunI CAATTG 2 cut(s) 148, 925
MvaI CCWGG 2 cut(s) 95, 262
MwoI GCNNNNNNNGC 3 cut(s) 427, 684, 849
NciI CCSGG 2 cut(s) 187, 797
NcoI CCATGG 1 cut(s) 14
NdeII GATC 2 cut(s) 241, 411
NlaIII CATG 5 cut(s) 18, 111, 177, 629, 658
NlaIV GGNNCC 5 cut(s) 130, 155, 156, 258, 760
NmeAIII GCCGAG 1 cut(s) 900
NmuCI GTSAC 2 cut(s) 190, 929
PaeR7I CTCGAG 1 cut(s) 722
PagI TCATGA 1 cut(s) 625
PaqCI CACCTGC 1 cut(s) 203
PflMI CCANNNNNTGG 2 cut(s) 704, 940
PfoI TCCNGGA 1 cut(s) 795
PkrI GCNGC 4 cut(s) 395, 423, 510, 830
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PpuMI RGGWCCY 2 cut(s) 154, 614
Psp124BI GAGCTC 3 cut(s) 777, 795, 921
Psp5II RGGWCCY 2 cut(s) 154, 614
Psp6I CCWGG 2 cut(s) 93, 260
PspEI GGTNACC 1 cut(s) 190
PspGI CCWGG 2 cut(s) 93, 260
PspN4I GGNNCC 5 cut(s) 130, 155, 156, 258, 760
PspPI GGNCC 6 cut(s) 18, 154, 183, 370, 614, 758
PspPPI RGGWCCY 2 cut(s) 154, 614
PsuI RGATCY 1 cut(s) 411
PvuII CAGCTG 1 cut(s) 421
RsaI GTAC 1 cut(s) 812
RsaNI GTAC 1 cut(s) 811
RseI CAYNNNNRTG 2 cut(s) 178, 956
SacI GAGCTC 3 cut(s) 777, 795, 921
SaqAI TTAA 2 cut(s) 35, 351
SatI GCNGC 4 cut(s) 394, 422, 509, 829
Sau3AI GATC 2 cut(s) 241, 411
Sau96I GGNCC 6 cut(s) 18, 154, 183, 370, 614, 758
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 4 cut(s) 95, 187, 262, 797
SduI GDGCHC 5 cut(s) 261, 470, 777, 795, 921
Sfr274I CTCGAG 1 cut(s) 722
SinI GGWCC 6 cut(s) 18, 154, 183, 370, 614, 758
SlaI CTCGAG 1 cut(s) 722
SmiMI CAYNNNNRTG 2 cut(s) 178, 956
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
Sse9I AATT 6 cut(s) 148, 226, 265, 543, 845, 925
SsiI CCGC 6 cut(s) 177, 218, 393, 508, 537, 828
SspMI CTAG 2 cut(s) 248, 549
SstI GAGCTC 3 cut(s) 777, 795, 921
StyD4I CCNGG 4 cut(s) 93, 185, 260, 795
StyI CCWWGG 2 cut(s) 14, 703
TaqI TCGA 3 cut(s) 432, 480, 723
TasI AATT 6 cut(s) 148, 226, 265, 543, 845, 925
TauI GCSGC 3 cut(s) 396, 511, 831
Tru1I TTAA 2 cut(s) 35, 351
Tru9I TTAA 2 cut(s) 35, 351
TscAI CASTG 2 cut(s) 372, 393
TseFI GTSAC 2 cut(s) 190, 929
TseI GCWGC 1 cut(s) 421
Tsp45I GTSAC 2 cut(s) 190, 929
TspDTI ATGAA 2 cut(s) 96, 180
TspRI CASTG 2 cut(s) 372, 393
Van91I CCANNNNNTGG 2 cut(s) 704, 940
VpaK11BI GGWCC 6 cut(s) 18, 154, 183, 370, 614, 758
XapI RAATTY 3 cut(s) 226, 265, 543
XhoI CTCGAG 1 cut(s) 722
XspI CTAG 2 cut(s) 248, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.