Rorug07G0007300

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006773
Physical Location & Seq
Reverse (-)
557046 .. 560098
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0007300.1

Sequence Viewer

Length: 1341 bp
ATGCGCCGTTCCAATGTGTCTAACATCCAAAAGCCTACTACTGGTAATGCACCGAGTAAACGCTCTCGTGTGCAAACTACTGATCAGCCATGCCCAAATGGATCTCGTTCTACTTCAGGTAGTGCAATGAGTAAACGCTCTCGTGTGCAAACTACTGATCAGCCATGCGAAAATTTTGTAGAAGATGGACTCAATTCTGCTATTGGTACCACTACAGAACGAACTACTACTGGGGTCAGAATTAGTTCACGTCTTCAGCATCAAACTGCTAATGATCAGCTATTGATAAATGTTACAACTGAAGAGCAAAATGATAATGTGATGTCAGCCAGTAATCAAGACCCTCCTACAGGTCCAACAAAAAAGGTGCGGGGAAAGACAAGAGGAGTGAATGCAGATAAGGTGCTTTCTCAATTGAATGCTAAAATACCTGTCACTCTGACCGAACAAAATGGCAGGCCTACAGGCCCATATGCTGAAATGTTGGCCAATGAAATTGGTTTCACAGTTCGAAACCATGCCCCACTAAATGTGGAAAAATGGAAGAAGATTCCGAAAATTGAAGTGGATAAGTTGGTTAAAAGAATAACGAACAAGTTTGACATTGACATGTCTCTCTCTTGGGTCGAGAGATATGTAATTACAACATGTCAGACTGTATTTTGTAATTTTCGTTATAAGTTGAAGAAACATTTTGAGAAATTTTCAACAATCGAGGAAGCAATTGAAAACAAACACGATGATGTCAAGACTCAGGAAGAATGGGAGTTTCTCTGTGCTCGTTTTTCTAGTGAAAAGTTTCAGATTCGTTCAGAGAAGAATGCTATAAATAGGTCAAAGTTGACACATCACCACAAAGCTGGGTCAAAGTCATTTATGTCTCACCAAGAGCAAATTGCAGCACAGACTGGAGAGATGCAAGGTGCAATTGATCGCTTTGAAACAGAGTACAAAAGCACTAAAAAAGGTTGGGACTTGGGAGCAAAAGCAAAGTGGGATGAAATGATTAAGATGCGAACTGAGACAACTCAACCTGATGGAACTCGGACAATGACAGATGATGAAATTTGTGCAAAAGTCCTCGGAGTCAAATCAGGCTACATCAAGGGTTGTGGTTTTGGCCCTAGACCTCCACCATCAAGAGTCTCTCATTCGTCGATAAATGAAATGTCTGAAAAGAACAAAGTGTTGCAAGAACAGCTTCAAGAGACCCAACACCTTGTAGGGACTCAACAACAAAAGATTGATGCACAAAATGAGGTGATCCAAAGATTGGAGGAGCAAGCTAAAAAGTTTGAGGAGTTCATGGCTAACTTTTCCAGGCAACATCCATCAAGTTAG

Protein Analysis

446

Amino Acids

50.52

Weight (kDa)

9.23

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 253 - 375 3.3e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 678
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AccB7I CCANNNNNTGG 1 cut(s) 1273
AciI CCGC 1 cut(s) 370
AclWI GGATC 2 cut(s) 109, 1258
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 3 cut(s) 172, 701, 1065
AcuI CTGAAG 3 cut(s) 99, 239, 321
AfaI GTAC 2 cut(s) 208, 950
AfiI CCNNNNNNNGG 3 cut(s) 41, 350, 1273
AflIII ACRYGT 2 cut(s) 609, 647
AgsI TTSAA 7 cut(s) 418, 563, 685, 708, 728, 941, 1205
AjiI CACGTC 1 cut(s) 251
AjnI CCWGG 1 cut(s) 1319
AluBI AGCT 4 cut(s) 280, 860, 1201, 1286
AluI AGCT 4 cut(s) 280, 860, 1201, 1286
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 5 cut(s) 618, 885, 1016, 1150, 1202
AlwI GGATC 2 cut(s) 109, 1258
AoxI GGCC 4 cut(s) 458, 466, 486, 1120
ApeKI GCWGC 1 cut(s) 899
ApoI RAATTY 3 cut(s) 172, 701, 1065
Asp700I GAANNNNTTC 3 cut(s) 244, 798, 1200
Asp718I GGTACC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 353, 467, 1121
AsuHPI GGTGA 3 cut(s) 842, 875, 1273
AsuII TTCGAA 1 cut(s) 511
AvaII GGWCC 1 cut(s) 353
BalI TGGCCA 1 cut(s) 488
BanI GGYRCC 1 cut(s) 206
BauI CACGAG 2 cut(s) 66, 141
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 1 cut(s) 911
BccI CCATC 4 cut(s) 179, 1031, 1144, 1339
BciT130I CCWGG 1 cut(s) 1321
BclI TGATCA 3 cut(s) 82, 157, 274
BcoDI GTCTC 5 cut(s) 618, 885, 1016, 1150, 1202
BfaI CTAG 2 cut(s) 789, 1125
BfmI CTRYAG 3 cut(s) 213, 348, 462
BisI GCNGC 1 cut(s) 900
BlsI GCNGC 1 cut(s) 901
Bme1390I CCNGG 1 cut(s) 1321
Bme18I GGWCC 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 353, 467, 1121
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 1321
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 4 cut(s) 268, 906, 1002, 1237
BmuI ACTGGG 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 930
Bpu14I TTCGAA 1 cut(s) 511
BsaI GGTCTC 1 cut(s) 1202
BsaJI CCNNGG 1 cut(s) 1081
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 350, 1273
Bse1I ACTGG 4 cut(s) 46, 235, 330, 913
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 1321
BseDI CCNNGG 1 cut(s) 1081
BseGI GGATG 3 cut(s) 24, 1003, 1327
BseLI CCNNNNNNNGG 3 cut(s) 41, 350, 1273
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 767, 1011
BseNI ACTGG 4 cut(s) 46, 235, 330, 913
BseRI GAGGAG 3 cut(s) 399, 1292, 1313
BseXI GCAGC 1 cut(s) 911
BseYI CCCAGC 1 cut(s) 860
BshFI GGCC 4 cut(s) 460, 468, 488, 1122
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 781
BslFI GGGAC 2 cut(s) 986, 1240
BslI CCNNNNNNNGG 3 cut(s) 41, 350, 1273
BsmAI GTCTC 5 cut(s) 618, 885, 1016, 1150, 1202
BsmFI GGGAC 2 cut(s) 986, 1240
BsmI GAATGC 3 cut(s) 397, 424, 826
BsnI GGCC 4 cut(s) 460, 468, 488, 1122
Bso31I GGTCTC 1 cut(s) 1202
Bsp119I TTCGAA 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 781
Bsp143I GATC 6 cut(s) 82, 101, 157, 274, 931, 1263
BspACI CCGC 1 cut(s) 370
BspANI GGCC 4 cut(s) 460, 468, 488, 1122
BspCNI CTCAG 2 cut(s) 766, 1012
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 2 cut(s) 109, 1258
BspQI GCTCTTC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 1202
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 4 cut(s) 46, 235, 330, 913
BssECI CCNNGG 1 cut(s) 1081
BssMI GATC 6 cut(s) 82, 101, 157, 274, 931, 1263
BssSI CACGAG 2 cut(s) 66, 141
Bst2BI CACGAG 2 cut(s) 66, 141
Bst2UI CCWGG 1 cut(s) 1321
Bst4CI ACNGT 2 cut(s) 508, 658
Bst6I CTCTTC 1 cut(s) 297
BstBI TTCGAA 1 cut(s) 511
BstC8I GCNNGC 2 cut(s) 458, 1284
BstDEI CTNAG 2 cut(s) 753, 1020
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 3 cut(s) 24, 1003, 1327
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 6 cut(s) 85, 104, 160, 277, 934, 1266
BstMAI GTCTC 5 cut(s) 618, 885, 1016, 1150, 1202
BstMBI GATC 6 cut(s) 82, 101, 157, 274, 931, 1263
BstMWI GCNNNNNNNGC 1 cut(s) 1198
BstNI CCWGG 1 cut(s) 1321
BstNSI RCATGY 2 cut(s) 613, 651
BstSCI CCNGG 1 cut(s) 1319
BstSFI CTRYAG 3 cut(s) 213, 348, 462
BstV1I GCAGC 1 cut(s) 911
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 860
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 4 cut(s) 460, 468, 488, 1122
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 3 cut(s) 24, 1003, 1327
Cac8I GCNNGC 2 cut(s) 458, 1284
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 353, 467, 1121
Csp6I GTAC 2 cut(s) 207, 949
CspCI CAANNNNNGTGG 2 cut(s) 1093, 1128
CviAII CATG 6 cut(s) 90, 165, 518, 610, 648, 1306
CviQI GTAC 2 cut(s) 207, 949
DdeI CTNAG 2 cut(s) 753, 1020
DpnI GATC 6 cut(s) 84, 103, 159, 276, 933, 1265
DpnII GATC 6 cut(s) 82, 101, 157, 274, 931, 1263
EaeI YGGCCR 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 460
Eco31I GGTCTC 1 cut(s) 1202
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 3 cut(s) 99, 239, 321
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 1319
FaeI CATG 6 cut(s) 93, 168, 521, 613, 651, 1309
FalI AAGNNNNNCTT 2 cut(s) 1185, 1217
FaqI GGGAC 2 cut(s) 986, 1240
FatI CATG 6 cut(s) 89, 164, 517, 609, 647, 1305
FauI CCCGC 1 cut(s) 363
FauNDI CATATG 1 cut(s) 472
FbaI TGATCA 3 cut(s) 82, 157, 274
Fnu4HI GCNGC 1 cut(s) 900
FokI GGATG 3 cut(s) 11, 1010, 1314
Fsp4HI GCNGC 1 cut(s) 900
FspBI CTAG 2 cut(s) 789, 1125
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 900
GsaI CCCAGC 1 cut(s) 864
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 4 cut(s) 460, 468, 488, 1122
HhaI GCGC 1 cut(s) 6
Hin1II CATG 6 cut(s) 93, 168, 521, 613, 651, 1309
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 843
HindII GTYRAC 1 cut(s) 843
HinfI GANTC 7 cut(s) 189, 550, 751, 805, 1086, 1143, 1228
HphI GGTGA 3 cut(s) 842, 875, 1273
Hpy166II GTNNAC 4 cut(s) 59, 134, 248, 843
Hpy188I TCNGA 9 cut(s) 239, 441, 555, 654, 804, 814, 1047, 1085, 1174
Hpy188III TCNNGA 6 cut(s) 338, 628, 748, 755, 1140, 1205
Hpy8I GTNNAC 4 cut(s) 59, 134, 248, 843
Hpy99I CGWCG 1 cut(s) 1159
HpyCH4III ACNGT 2 cut(s) 508, 658
HpyCH4IV ACGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 1198
HpyF3I CTNAG 2 cut(s) 753, 1020
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 6 cut(s) 93, 168, 521, 613, 651, 1309
HspAI GCGC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 210
Ksp22I TGATCA 3 cut(s) 82, 157, 274
Kzo9I GATC 6 cut(s) 82, 101, 157, 274, 931, 1263
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 980, 1279
Lsp1109I GCAGC 1 cut(s) 911
LweI GCATC 4 cut(s) 268, 906, 1002, 1237
MaeI CTAG 2 cut(s) 789, 1125
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 292, 433
MalI GATC 6 cut(s) 84, 103, 159, 276, 933, 1265
MboI GATC 6 cut(s) 82, 101, 157, 274, 931, 1263
MboII GAAGA 8 cut(s) 194, 245, 314, 556, 559, 697, 770, 829
MfeI CAATTG 3 cut(s) 413, 723, 927
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 781
MlsI TGGCCA 1 cut(s) 488
MluNI TGGCCA 1 cut(s) 488
MlyI GAGTC 5 cut(s) 183, 745, 1095, 1152, 1222
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 8 cut(s) 354, 377, 709, 1091, 1140, 1252, 1270, 1291
Mox20I TGGCCA 1 cut(s) 488
MroXI GAANNNNTTC 3 cut(s) 244, 798, 1200
MscI TGGCCA 1 cut(s) 488
MseI TTAA 2 cut(s) 579, 1008
MslI CAYNNNNRTG 2 cut(s) 608, 741
Msp20I TGGCCA 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 1321
MunI CAATTG 3 cut(s) 413, 723, 927
Mva1269I GAATGC 3 cut(s) 397, 424, 826
MvaI CCWGG 1 cut(s) 1321
MwoI GCNNNNNNNGC 1 cut(s) 1198
NdeI CATATG 1 cut(s) 472
NdeII GATC 6 cut(s) 82, 101, 157, 274, 931, 1263
NlaIII CATG 6 cut(s) 93, 168, 521, 613, 651, 1309
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 2 cut(s) 613, 651
NspV TTCGAA 1 cut(s) 511
PceI AGGCCT 1 cut(s) 460
PciI ACATGT 2 cut(s) 609, 647
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 3 cut(s) 397, 424, 826
PdmI GAANNNNTTC 3 cut(s) 244, 798, 1200
PfeI GAWTC 2 cut(s) 550, 805
PflMI CCANNNNNTGG 1 cut(s) 1273
PkrI GCNGC 1 cut(s) 901
PleI GAGTC 5 cut(s) 183, 745, 1094, 1151, 1222
PpsI GAGTC 5 cut(s) 183, 745, 1094, 1151, 1222
PscI ACATGT 2 cut(s) 609, 647
PsiI TTATAA 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 1319
PspFI CCCAGC 1 cut(s) 860
PspGI CCWGG 1 cut(s) 1319
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 3 cut(s) 353, 467, 1121
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 2 cut(s) 208, 950
RsaNI GTAC 2 cut(s) 207, 949
RseI CAYNNNNRTG 2 cut(s) 608, 741
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 579, 1008
SatI GCNGC 1 cut(s) 900
Sau3AI GATC 6 cut(s) 82, 101, 157, 274, 931, 1263
Sau96I GGNCC 3 cut(s) 353, 467, 1121
SchI GAGTC 5 cut(s) 183, 745, 1095, 1152, 1222
ScrFI CCNGG 1 cut(s) 1321
SduI GDGCHC 1 cut(s) 781
SfaNI GCATC 4 cut(s) 268, 906, 1002, 1237
SfcI CTRYAG 3 cut(s) 213, 348, 462
SfuI TTCGAA 1 cut(s) 511
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 608, 741
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 1 cut(s) 370
SspMI CTAG 2 cut(s) 789, 1125
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 1319
TaaI ACNGT 2 cut(s) 508, 658
TaiI ACGT 1 cut(s) 253
TaqI TCGA 4 cut(s) 511, 627, 714, 1157
TaqII GACCGA 1 cut(s) 458
TatI WGTACW 1 cut(s) 948
TfiI GAWTC 2 cut(s) 550, 805
Tru1I TTAA 2 cut(s) 579, 1008
Tru9I TTAA 2 cut(s) 579, 1008
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 899
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 5 cut(s) 507, 1014, 1077, 1179, 1294
Van91I CCANNNNNTGG 1 cut(s) 1273
VpaK11BI GGWCC 1 cut(s) 353
XagI CCTNNNNNAGG 1 cut(s) 348
XapI RAATTY 3 cut(s) 172, 701, 1065
XceI RCATGY 2 cut(s) 613, 651
XmnI GAANNNNTTC 3 cut(s) 244, 798, 1200
XspI CTAG 2 cut(s) 789, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.