Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006773

Physical Location & Seq

Genomic Coordinates Reverse (-)

56485244 .. 56488944

Gene Structure 3701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAAGAAACACTAAAGTACTTGGCAGGAATTGCAGGGCCAAGTGGTTATGGCTCAAAATCAACTGCCGAACAAGTTACTCAAGATTATTGTTGTTCTTCATCAGTGCCTTCTCATCGTCTAACTGCAATAATCACTGGAGCAACTTCAGGGATTGGAGCTGAAACAGCCAGAGTATTGGCGAAGAGAGGGGTGAGGATTGTGATGCCGGCAAGAGACTTGGCGAAGGCGTCGAAAGTGAAGGAGGGAATCCAAAGGGAGAATCCAAAGGCTGAGGTTATAATAATGGAGATTGATTTGAGCTCCCTTACTTCTGTTAATAGATTCTGCTCCCAGTTCTTGGCTCTAAGACTACCCCTCAATATCCTCATAAACAATGGAGGGATATATTCTAAAGGTTTGGAGTATTCTGAGGACAAGATTGAGATGACATTTGCTACAAATTACTTGGGCCATCATTTTTTGACAGAAAAGCTGCTGGAAAAAATGGTGGAAACGGCAGCTCAGACTGGCATCCGGGGAAGAATCATTAATGTTTCTTCTGTGATCCACAGCTGGGTGAAGAGGGAGAGTTTCTGCTTTAATCAACTGCTCAACCCAAAGAATTACAATGGCACAAAAGCATATGCACAGTCCAAATTGGCCAACATACTGCATGTCAAGGAATTGGCCAAACAGCTTAAGGCGAGAAATGCAAGAGTAACCATCAATGCAGTACACCCCGGAATCGTGAAAACCGGAATTATTAGAGCTCACAAGGGCTTTTTCACAGATTCTGTGTTCTTCATAGCATCCAAGTTACTAAAATCAACATCTCAGGGTGCTTCAACAACGTGCTATGTTGCTTTAAGCCCAGAATTAGAAGGGGTAACAGGAAAGTACTTTGCAGACTGCAATGAGAACGAGTGCTCAAATCTAGCAAATGATGAATCAGAAGCATACGAGTTATGGAAGCAAACTCGTTTTCTAATCCATAGACGACTATGTCAACCAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

333

Amino Acids

36.7

Weight (kDa)

9.34

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	42 - 183	1e-25	short chain dehydrogenase
KR	PF08659	42 - 160	5.4e-07	KR domain
adh_short_C2	PF13561	47 - 294	2.7e-19	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130
fragaria_vesca	FvH4_5g05830 FvH4_5g05830 FvH4_5g05830
malus_domestica	MD06G1170000.v1.1 MD14G1175600.v1.1
prunus_persica	Prupe.5G169500_v2.0.a1
pyrus_communis	pycom06g15140 pycom14g14650
rosa_chinensis	RchiOBHm_Chr7g0192991
rosa_laevigata	RLG00000004303
rosa_multiflora	Rmu_sc0002040.1_g000068
rosa_roxburghii	Rroxscaffold_3G00262470
rosa_rugosa	Rorug07G0007300
rosa_samantha	Rh7AG132100 Rh7BG133000 Rh7DG134000
rosa_wichuraiana	Rw7G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AasI	GACNNNNNNGTC	1 cut(s)	984
AccB7I	CCANNNNNTGG	1 cut(s)	340
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	2 cut(s)	642, 669
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	3 cut(s)	20, 717, 881
AfiI	CCNNNNNNNGG	2 cut(s)	340, 556
AflII	CTTAAG	1 cut(s)	680
AgsI	TTSAA	1 cut(s)	828
AluBI	AGCT	8 cut(s)	161, 303, 475, 503, 555, 679, 752, 998
AluI	AGCT	8 cut(s)	161, 303, 475, 503, 555, 679, 752, 998
Alw21I	GWGCWC	3 cut(s)	305, 754, 911
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	4 cut(s)	38, 451, 642, 669
ApeKI	GCWGC	2 cut(s)	475, 500
AseI	ATTAAT	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	38, 451
AsuC2I	CCSGG	2 cut(s)	518, 723
AsuHPI	GGTGA	2 cut(s)	205, 571
BalI	TGGCCA	2 cut(s)	644, 671
BanII	GRGCYC	2 cut(s)	305, 754
Bbv12I	GWGCWC	3 cut(s)	305, 754, 911
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	462, 512
BccI	CCATC	2 cut(s)	462, 713
BceAI	ACGGC	1 cut(s)	513
BcnI	CCSGG	2 cut(s)	518, 723
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	917
BfrI	CTTAAG	1 cut(s)	680
BisI	GCNGC	2 cut(s)	476, 501
BlsI	GCNGC	2 cut(s)	477, 502
BmcAI	AGTACT	2 cut(s)	20, 881
Bme1390I	CCNGG	2 cut(s)	518, 723
BmgT120I	GGNCC	2 cut(s)	38, 451
BmrFI	CCNGG	2 cut(s)	518, 723
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	195, 522, 800
BmuI	ACTGGG	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	518, 723
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	517, 721
BsaWI	WCCGGW	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 556
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	3 cut(s)	142, 334, 514
Bse3DI	GCAATG	1 cut(s)	901
BseDI	CCNNGG	2 cut(s)	517, 721
BseGI	GGATG	2 cut(s)	513, 791
BseLI	CCNNNNNNNGG	2 cut(s)	340, 556
BseMI	GCAATG	1 cut(s)	901
BseMII	CTCAG	4 cut(s)	264, 402, 518, 830
BseNI	ACTGG	3 cut(s)	142, 334, 514
BseXI	GCAGC	2 cut(s)	462, 512
BseYI	CCCAGC	1 cut(s)	555
BshFI	GGCC	4 cut(s)	40, 453, 644, 671
BsiHKAI	GWGCWC	3 cut(s)	305, 754, 911
BsiSI	CCGG	4 cut(s)	209, 517, 723, 738
BslI	CCNNNNNNNGG	2 cut(s)	340, 556
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	4 cut(s)	40, 453, 644, 671
Bsp1286I	GDGCHC	3 cut(s)	305, 754, 911
Bsp143I	GATC	1 cut(s)	546
BspANI	GGCC	4 cut(s)	40, 453, 644, 671
BspCNI	CTCAG	4 cut(s)	265, 403, 517, 829
BspPI	GGATC	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	680
BsrDI	GCAATG	1 cut(s)	901
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	3 cut(s)	142, 334, 514
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	517, 721
BssMI	GATC	1 cut(s)	546
BssNI	GRCGYC	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	633
Bst6I	CTCTTC	2 cut(s)	179, 557
BstACI	GRCGYC	1 cut(s)	230
BstAFI	CTTAAG	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	5 cut(s)	273, 347, 411, 504, 816
BstF5I	GGATG	2 cut(s)	513, 791
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	546
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 167, 692
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	516, 721
BstV1I	GCAGC	2 cut(s)	462, 512
BstXI	CCANNNNNNTGG	1 cut(s)	178
BsuRI	GGCC	4 cut(s)	40, 453, 644, 671
BtsCI	GGATG	2 cut(s)	513, 791
BtsIMutI	CAGTG	2 cut(s)	111, 135
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	776
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	38, 451
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	19, 716, 880
CviAII	CATG	1 cut(s)	656
CviQI	GTAC	3 cut(s)	19, 716, 880
DdeI	CTNAG	5 cut(s)	273, 347, 411, 504, 816
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
DrdI	GACNNNNNNGTC	1 cut(s)	984
DseDI	GACNNNNNNGTC	1 cut(s)	984
EaeI	YGGCCR	2 cut(s)	642, 669
Eam1104I	CTCTTC	2 cut(s)	179, 557
EarI	CTCTTC	2 cut(s)	179, 557
Ecl136II	GAGCTC	2 cut(s)	303, 752
Eco24I	GRGCYC	2 cut(s)	305, 754
Eco53kI	GAGCTC	2 cut(s)	303, 752
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	2 cut(s)	303, 752
EcoT38I	GRGCYC	2 cut(s)	305, 754
FaeI	CATG	1 cut(s)	659
FatI	CATG	1 cut(s)	655
FauNDI	CATATG	1 cut(s)	625
Fnu4HI	GCNGC	2 cut(s)	476, 501
FokI	GGATG	2 cut(s)	500, 778
FriOI	GRGCYC	2 cut(s)	305, 754
Fsp4HI	GCNGC	2 cut(s)	476, 501
FspBI	CTAG	1 cut(s)	917
GluI	GCNGC	2 cut(s)	476, 501
GsaI	CCCAGC	1 cut(s)	559
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	4 cut(s)	40, 453, 644, 671
HapII	CCGG	4 cut(s)	209, 517, 723, 738
HgaI	GACGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	659
HincII	GTYRAC	1 cut(s)	989
HindII	GTYRAC	1 cut(s)	989
HinfI	GANTC	7 cut(s)	249, 262, 324, 525, 726, 773, 929
HpaII	CCGG	4 cut(s)	209, 517, 723, 738
HphI	GGTGA	2 cut(s)	205, 571
Hpy166II	GTNNAC	2 cut(s)	718, 989
Hpy188I	TCNGA	3 cut(s)	412, 507, 934
Hpy188III	TCNNGA	2 cut(s)	83, 730
Hpy8I	GTNNAC	2 cut(s)	718, 989
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	4 cut(s)	120, 220, 235, 857
HpyCH4III	ACNGT	1 cut(s)	633
HpyCH4IV	ACGT	1 cut(s)	833
HpyCH4V	TGCA	8 cut(s)	35, 128, 629, 655, 695, 713, 887, 894
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 167, 692
HpyF3I	CTNAG	5 cut(s)	273, 347, 411, 504, 816
HpySE526I	ACGT	1 cut(s)	833
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	659
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	546
LmnI	GCTCC	4 cut(s)	140, 158, 308, 335
Lsp1109I	GCAGC	2 cut(s)	462, 512
LweI	GCATC	3 cut(s)	195, 522, 800
MaeI	CTAG	1 cut(s)	917
MaeII	ACGT	1 cut(s)	833
MaeIII	GTNAC	4 cut(s)	76, 700, 798, 868
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MboII	GAAGA	6 cut(s)	90, 196, 531, 534, 574, 775
MhlI	GDGCHC	3 cut(s)	305, 754, 911
MlsI	TGGCCA	2 cut(s)	644, 671
MluCI	AATT	7 cut(s)	30, 442, 604, 638, 665, 741, 857
MluNI	TGGCCA	2 cut(s)	644, 671
MnlI	CCTC	9 cut(s)	182, 189, 238, 268, 368, 374, 377, 406, 558
Mox20I	TGGCCA	2 cut(s)	644, 671
MroNI	GCCGGC	1 cut(s)	208
MscI	TGGCCA	2 cut(s)	644, 671
MseI	TTAA	6 cut(s)	318, 531, 582, 681, 848, 1000
Msp20I	TGGCCA	2 cut(s)	644, 671
MspA1I	CMGCKG	1 cut(s)	555
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	4 cut(s)	209, 517, 723, 738
MspR9I	CCNGG	2 cut(s)	518, 723
MwoI	GCNNNNNNNGC	3 cut(s)	32, 167, 692
NaeI	GCCGGC	1 cut(s)	210
NciI	CCSGG	2 cut(s)	518, 723
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	1 cut(s)	546
NgoMIV	GCCGGC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	659
NspI	RCATGY	1 cut(s)	659
PdiI	GCCGGC	1 cut(s)	210
PfeI	GAWTC	7 cut(s)	249, 262, 324, 525, 726, 773, 929
PflFI	GACNNNGTC	1 cut(s)	984
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	477, 502
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	281
Psp124BI	GAGCTC	2 cut(s)	305, 754
PspFI	CCCAGC	1 cut(s)	555
PspPI	GGNCC	2 cut(s)	38, 451
PstNI	CAGNNNCTG	1 cut(s)	776
PsyI	GACNNNGTC	1 cut(s)	984
PvuII	CAGCTG	1 cut(s)	555
RsaI	GTAC	3 cut(s)	20, 717, 881
RsaNI	GTAC	3 cut(s)	19, 716, 880
SacI	GAGCTC	2 cut(s)	305, 754
SaqAI	TTAA	6 cut(s)	318, 531, 582, 681, 848, 1000
SatI	GCNGC	2 cut(s)	476, 501
Sau3AI	GATC	1 cut(s)	546
Sau96I	GGNCC	2 cut(s)	38, 451
ScaI	AGTACT	2 cut(s)	20, 881
ScrFI	CCNGG	2 cut(s)	518, 723
SduI	GDGCHC	3 cut(s)	305, 754, 911
SfaNI	GCATC	3 cut(s)	195, 522, 800
SmlI	CTYRAG	2 cut(s)	81, 680
SmoI	CTYRAG	2 cut(s)	81, 680
Sse9I	AATT	7 cut(s)	30, 442, 604, 638, 665, 741, 857
SspMI	CTAG	1 cut(s)	917
SstI	GAGCTC	2 cut(s)	305, 754
StyD4I	CCNGG	2 cut(s)	516, 721
TaaI	ACNGT	1 cut(s)	633
TaiI	ACGT	1 cut(s)	836
TaqI	TCGA	1 cut(s)	233
TasI	AATT	7 cut(s)	30, 442, 604, 638, 665, 741, 857
TatI	WGTACW	3 cut(s)	18, 715, 879
TfiI	GAWTC	7 cut(s)	249, 262, 324, 525, 726, 773, 929
Tru1I	TTAA	6 cut(s)	318, 531, 582, 681, 848, 1000
Tru9I	TTAA	6 cut(s)	318, 531, 582, 681, 848, 1000
TscAI	CASTG	2 cut(s)	111, 142
TseI	GCWGC	2 cut(s)	475, 500
TspDTI	ATGAA	4 cut(s)	17, 90, 775, 942
TspRI	CASTG	2 cut(s)	111, 142
Tth111I	GACNNNGTC	1 cut(s)	984
Van91I	CCANNNNNTGG	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	680
VspI	ATTAAT	1 cut(s)	531
XceI	RCATGY	1 cut(s)	659
XspI	CTAG	1 cut(s)	917
ZrmI	AGTACT	2 cut(s)	20, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.