Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006773

Physical Location & Seq

Genomic Coordinates Reverse (-)

3436165 .. 3442092

Gene Structure 5928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05830.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAAGGAACACTAAAGTACTTGGCAGGAATTGCAGGGCCAAGTGGTTATGGCTCCAAATCAACTGCTGAACAAGTTACTCAAGATTATTGTTGTTCTTCATCAGCGCCTTCTCATCGTTTAACTGCGATAATTACTGGAGCAACTTCAGGGATTGGAGCTGAAACGGCGAGAGTATTGGCGAAGAGAGGGGTGAGGATTGTGATGCCGGCAAGAGACTTGGCGAAAGCGGCGAAAGTGAAGGAGGGAATCGAAAGGGAGAATCCAAAGGCTGAGGTTATAATAATGGAGATTGATCTCAGCTCCCTTACTTCTGTAGATAGATTCTGCTCCCAGTTCTTGGCTCTAAGATTACCCCTCAATATTCTCATAAACAATGGAGGAATATATTCCAAATGTTTGGAGTATTCGGAGGACAAGATTGAGATGACGTTCGCTACAAATTACTTGGGCCATCATTTTTTGACAGAAAAGTTGCTGGAAAAAATGGTGGAAACGGCAGCTCAGACTGGCATCCGTGGAAGAATCATTAATGTTTCTTCTGTGATCCACAGCTGGGTGAAGCGGGAGAGTTTCAGCTTTAATCAATTGCTCAACCCAAAGAATTACAATGGCACAAAAGCGTATGCACAATCCAAATTGGCCAACATACTGCACGTCAAGGAACTGGCCAAACAGCTTAAGGCTAGAAATGCAAGAGTAACCATCAATGCAGTACACCCCGGAATCGTGAAGACCGGAATTATTAGAGCTCACAAGGGCTTTATCACAGATTCTGTGTTCTTCATAGCATCCAAGTTACTAAAAACAACATCTCAGGGTGCTTCGACTGCGTGCTATGTTGCTTTAAGCCCGGAATTAGAAGGCGTAACTGGAAAGTACTTTGCAGACTGTAATGAGTGCGAGTGCTCAAATCTAGCAAATGATGAATCTGAAGCATACAAGTTATGGAAGCAAACTCGTATTCTAATTCATAGACGACTATGTCAACCGCCGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

334

Amino Acids

36.53

Weight (kDa)

9.35

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	42 - 183	2.2e-26	short chain dehydrogenase
KR	PF08659	42 - 160	7.7e-07	KR domain
Epimerase	PF01370	44 - 227	9.4e-06	NAD dependent epimerase/dehydratase family
adh_short_C2	PF13561	47 - 294	4.3e-20	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130
fragaria_vesca	FvH4_5g05830 FvH4_5g05830 FvH4_5g05830
malus_domestica	MD06G1170000.v1.1 MD14G1175600.v1.1
prunus_persica	Prupe.5G169500_v2.0.a1
pyrus_communis	pycom06g15140 pycom14g14650
rosa_chinensis	RchiOBHm_Chr7g0192991
rosa_laevigata	RLG00000004303
rosa_multiflora	Rmu_sc0002040.1_g000068
rosa_roxburghii	Rroxscaffold_3G00262470
rosa_rugosa	Rorug07G0007300
rosa_samantha	Rh7AG132100 Rh7BG133000 Rh7DG134000
rosa_wichuraiana	Rw7G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AasI	GACNNNNNNGTC	1 cut(s)	984
AccB7I	CCANNNNNTGG	1 cut(s)	340
AciI	CCGC	3 cut(s)	230, 565, 992
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	2 cut(s)	642, 669
AcuI	CTGAAG	2 cut(s)	132, 954
AfaI	GTAC	3 cut(s)	20, 717, 881
AfiI	CCNNNNNNNGG	2 cut(s)	340, 556
AflII	CTTAAG	1 cut(s)	680
AjiI	CACGTC	1 cut(s)	658
AluBI	AGCT	7 cut(s)	161, 303, 503, 555, 579, 679, 752
AluI	AGCT	7 cut(s)	161, 303, 503, 555, 579, 679, 752
Alw21I	GWGCWC	2 cut(s)	754, 911
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	4 cut(s)	38, 451, 642, 669
ApeKI	GCWGC	1 cut(s)	500
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	38, 451
AsuC2I	CCSGG	2 cut(s)	723, 854
AsuHPI	GGTGA	2 cut(s)	205, 571
BalI	TGGCCA	2 cut(s)	644, 671
BanII	GRGCYC	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	740
Bbv12I	GWGCWC	2 cut(s)	754, 911
BbvCI	CCTCAGC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	2 cut(s)	462, 713
BceAI	ACGGC	3 cut(s)	183, 513, 979
BcnI	CCSGG	2 cut(s)	723, 854
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	687, 917
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	110
BfrI	CTTAAG	1 cut(s)	680
BisI	GCNGC	2 cut(s)	231, 501
BlsI	GCNGC	2 cut(s)	232, 502
BmcAI	AGTACT	2 cut(s)	20, 881
Bme1390I	CCNGG	2 cut(s)	723, 854
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	38, 451
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	723, 854
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	195, 522, 800
BmuI	ACTGGG	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	740
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	723, 854
BsaJI	CCNNGG	2 cut(s)	517, 721
BsaWI	WCCGGW	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 556
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	5 cut(s)	142, 334, 514, 672, 877
BseDI	CCNNGG	2 cut(s)	517, 721
BseGI	GGATG	2 cut(s)	513, 791
BseLI	CCNNNNNNNGG	2 cut(s)	340, 556
BseMII	CTCAG	4 cut(s)	264, 313, 518, 830
BseNI	ACTGG	5 cut(s)	142, 334, 514, 672, 877
BseXI	GCAGC	1 cut(s)	512
BseYI	CCCAGC	1 cut(s)	555
BsgI	GTGCAG	1 cut(s)	638
BshFI	GGCC	4 cut(s)	40, 453, 644, 671
BsiHKAI	GWGCWC	2 cut(s)	754, 911
BsiSI	CCGG	4 cut(s)	209, 723, 738, 854
BslI	CCNNNNNNNGG	2 cut(s)	340, 556
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	4 cut(s)	40, 453, 644, 671
Bsp1286I	GDGCHC	2 cut(s)	754, 911
Bsp143I	GATC	2 cut(s)	295, 546
BspACI	CCGC	3 cut(s)	230, 565, 992
BspANI	GGCC	4 cut(s)	40, 453, 644, 671
BspCNI	CTCAG	4 cut(s)	265, 312, 517, 829
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	680
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	5 cut(s)	142, 334, 514, 672, 877
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	517, 721
BssMI	GATC	2 cut(s)	295, 546
Bst4CI	ACNGT	1 cut(s)	893
Bst6I	CTCTTC	1 cut(s)	179
BstAFI	CTTAAG	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	210, 835
BstDEI	CTNAG	5 cut(s)	273, 299, 347, 504, 816
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	513, 791
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	2 cut(s)	298, 549
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	295, 546
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 167, 230, 692, 830
BstSCI	CCNGG	2 cut(s)	721, 852
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	512
BstV2I	GAAGAC	1 cut(s)	740
BstXI	CCANNNNNNTGG	1 cut(s)	400
BsuRI	GGCC	4 cut(s)	40, 453, 644, 671
BtgI	CCRYGG	1 cut(s)	517
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	513, 791
Cac8I	GCNNGC	2 cut(s)	210, 835
CaiI	CAGNNNCTG	1 cut(s)	776
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	38, 451
Csp6I	GTAC	3 cut(s)	19, 716, 880
CviQI	GTAC	3 cut(s)	19, 716, 880
DdeI	CTNAG	5 cut(s)	273, 299, 347, 504, 816
DpnI	GATC	2 cut(s)	297, 548
DpnII	GATC	2 cut(s)	295, 546
DrdI	GACNNNNNNGTC	1 cut(s)	984
DseDI	GACNNNNNNGTC	1 cut(s)	984
EaeI	YGGCCR	2 cut(s)	642, 669
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	752
Eco24I	GRGCYC	1 cut(s)	754
Eco53kI	GAGCTC	1 cut(s)	752
Eco57I	CTGAAG	2 cut(s)	132, 954
EcoICRI	GAGCTC	1 cut(s)	752
EcoT38I	GRGCYC	1 cut(s)	754
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	2 cut(s)	231, 501
FokI	GGATG	2 cut(s)	500, 778
FriOI	GRGCYC	1 cut(s)	754
Fsp4HI	GCNGC	2 cut(s)	231, 501
FspBI	CTAG	2 cut(s)	687, 917
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	2 cut(s)	231, 501
GsaI	CCCAGC	1 cut(s)	559
GsuI	CTGGAG	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	4 cut(s)	40, 453, 644, 671
HapII	CCGG	4 cut(s)	209, 723, 738, 854
HhaI	GCGC	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	1 cut(s)	989
HindII	GTYRAC	1 cut(s)	989
HinfI	GANTC	7 cut(s)	249, 262, 324, 525, 726, 773, 929
HpaII	CCGG	4 cut(s)	209, 723, 738, 854
HphI	GGTGA	2 cut(s)	205, 571
Hpy166II	GTNNAC	2 cut(s)	718, 989
Hpy188I	TCNGA	3 cut(s)	412, 507, 934
Hpy188III	TCNNGA	2 cut(s)	83, 730
Hpy8I	GTNNAC	2 cut(s)	718, 989
HpyAV	CCTTC	3 cut(s)	120, 235, 857
HpyCH4III	ACNGT	1 cut(s)	893
HpyCH4IV	ACGT	2 cut(s)	431, 657
HpyCH4V	TGCA	6 cut(s)	35, 629, 655, 695, 713, 887
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 167, 230, 692, 830
HpyF3I	CTNAG	5 cut(s)	273, 299, 347, 504, 816
HpySE526I	ACGT	2 cut(s)	431, 657
HspAI	GCGC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	295, 546
LmnI	GCTCC	5 cut(s)	59, 140, 158, 308, 335
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	3 cut(s)	195, 522, 800
MaeI	CTAG	2 cut(s)	687, 917
MaeII	ACGT	2 cut(s)	431, 657
MaeIII	GTNAC	4 cut(s)	76, 700, 798, 868
MalI	GATC	2 cut(s)	297, 548
MboI	GATC	2 cut(s)	295, 546
MboII	GAAGA	6 cut(s)	90, 196, 531, 534, 745, 775
MfeI	CAATTG	1 cut(s)	587
MhlI	GDGCHC	2 cut(s)	754, 911
MlsI	TGGCCA	2 cut(s)	644, 671
MluCI	AATT	9 cut(s)	30, 132, 442, 587, 604, 638, 741, 857, 969
MluNI	TGGCCA	2 cut(s)	644, 671
MnlI	CCTC	7 cut(s)	182, 189, 238, 268, 368, 374, 406
Mox20I	TGGCCA	2 cut(s)	644, 671
MroNI	GCCGGC	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	388
MscI	TGGCCA	2 cut(s)	644, 671
MseI	TTAA	6 cut(s)	122, 531, 582, 681, 848, 1000
Msp20I	TGGCCA	2 cut(s)	644, 671
MspA1I	CMGCKG	1 cut(s)	555
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	4 cut(s)	209, 723, 738, 854
MspR9I	CCNGG	2 cut(s)	723, 854
MunI	CAATTG	1 cut(s)	587
MwoI	GCNNNNNNNGC	5 cut(s)	32, 167, 230, 692, 830
NaeI	GCCGGC	1 cut(s)	210
NciI	CCSGG	2 cut(s)	723, 854
NdeII	GATC	2 cut(s)	295, 546
NgoMIV	GCCGGC	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	55
PdiI	GCCGGC	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	7 cut(s)	249, 262, 324, 525, 726, 773, 929
PflFI	GACNNNGTC	1 cut(s)	984
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	232, 502
PshBI	ATTAAT	1 cut(s)	531
PsiI	TTATAA	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	754
PspFI	CCCAGC	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	38, 451
PstNI	CAGNNNCTG	1 cut(s)	776
PsyI	GACNNNGTC	1 cut(s)	984
PvuII	CAGCTG	1 cut(s)	555
RsaI	GTAC	3 cut(s)	20, 717, 881
RsaNI	GTAC	3 cut(s)	19, 716, 880
SacI	GAGCTC	1 cut(s)	754
SaqAI	TTAA	6 cut(s)	122, 531, 582, 681, 848, 1000
SatI	GCNGC	2 cut(s)	231, 501
Sau3AI	GATC	2 cut(s)	295, 546
Sau96I	GGNCC	2 cut(s)	38, 451
ScaI	AGTACT	2 cut(s)	20, 881
ScrFI	CCNGG	2 cut(s)	723, 854
SduI	GDGCHC	2 cut(s)	754, 911
SfaNI	GCATC	3 cut(s)	195, 522, 800
SfcI	CTRYAG	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	81, 680
SmoI	CTYRAG	2 cut(s)	81, 680
Sse9I	AATT	9 cut(s)	30, 132, 442, 587, 604, 638, 741, 857, 969
SsiI	CCGC	3 cut(s)	230, 565, 992
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	687, 917
SstI	GAGCTC	1 cut(s)	754
StyD4I	CCNGG	2 cut(s)	721, 852
TaaI	ACNGT	1 cut(s)	893
TaiI	ACGT	2 cut(s)	434, 660
TaqI	TCGA	2 cut(s)	252, 827
TasI	AATT	9 cut(s)	30, 132, 442, 587, 604, 638, 741, 857, 969
TatI	WGTACW	3 cut(s)	18, 715, 879
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	7 cut(s)	249, 262, 324, 525, 726, 773, 929
Tru1I	TTAA	6 cut(s)	122, 531, 582, 681, 848, 1000
Tru9I	TTAA	6 cut(s)	122, 531, 582, 681, 848, 1000
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	5 cut(s)	17, 90, 775, 942, 962
TspGWI	ACGGA	1 cut(s)	506
Tth111I	GACNNNGTC	1 cut(s)	984
Van91I	CCANNNNNTGG	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	680
VspI	ATTAAT	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	2 cut(s)	687, 917
ZrmI	AGTACT	2 cut(s)	20, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.