Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006773

Physical Location & Seq

Genomic Coordinates Forward (+)

19729268 .. 19732595

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGGAGACACTAAGGTACTTGGCAGGAATTGCAGGGCCAAGTGGTTATGGCTCAAAATCAACTGCTGAGCAAGTCACTCGGGATTGTTCTTCCTCAGTCCCTTCTCAACTCACTGCCATAATCACTGGAGCAACATCAGGGATCGGAGCTGAAACGGCAAGAGTGGTGGCAAAGAGAGGAGTTAGGGTCGTGATTCCGGCCAGAGATTTATCGAAGGCAGCGGAAGTGAAGGAGGGGATTCAAAGGGAGAGTCCAGAGGCTGAGGTTATAATCTTGGAGATTGACCTGAGCTCACTTGCTTCTGTTGATCGATTTTGTTCTGAGTTCTTAGCTCTAAGACTTCCCCTCAACATCCTCATAAACAATGGTGGGATGTTTTCTCAGGCTTTGGAATATTCTGAAGACAAAATTGAGATGACATTTGCTACAAATTACTTGGGACACCATTTTTTGACAGAAAAGCTGCTGGAAAAAATGGTGGAAACAGCAGCTCTGACCGGCATCCGAGGGAGAATAATCAACGTTTCTTCTGTGATCCACAGCTGGGTTAAGAGAGATGACTTCTCCTTCAACCAATTGCTCAACCCTAACAATTATAATGGTACAAAAGCATATGCTCAATCCAAATTGGCTAACATATTGCATGCCAAGGAACTGGCAAGACAGCTGAAGGCAAGAAATGCAAGAGTAACGATCAATGCCATACATCCGGGAATTGTGAAGACGGGAATTATGAGAGCTCACAAGGGCTTTATCACAGATTCTGTGTTCTTCATCGCGTCCAAGTTACTAAAATCGACATCTCAGGGTGCTTCAACAACGTGCTATGTTGCTTTAAGCCCGGAGCTGGAAGGAGTGAGTGGGAGATACTTTGCAGACTGCAACGAAAGCACCTGCTCGAAACTAGCAAACGATGAATCTGAAGCTCGTAAGTTGTGGAAGCAGACTCGTCTGCTAATCCATAGACGACTTTCTCAACCAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

331

Amino Acids

36.11

Weight (kDa)

9.3

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130
fragaria_vesca	FvH4_5g05830 FvH4_5g05830 FvH4_5g05830
malus_domestica	MD06G1170000.v1.1 MD14G1175600.v1.1
prunus_persica	Prupe.5G169500_v2.0.a1
pyrus_communis	pycom06g15140 pycom14g14650
rosa_chinensis	RchiOBHm_Chr7g0192991
rosa_laevigata	RLG00000004303
rosa_multiflora	Rmu_sc0002040.1_g000068
rosa_roxburghii	Rroxscaffold_3G00262470
rosa_rugosa	Rorug07G0007300
rosa_samantha	Rh7AG132100 Rh7BG133000 Rh7DG134000
rosa_wichuraiana	Rw7G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	272, 600
AarI	CACCTGC	1 cut(s)	905
Acc36I	ACCTGC	1 cut(s)	905
AccII	CGCG	1 cut(s)	782
AciI	CCGC	1 cut(s)	224
AclI	AACGTT	1 cut(s)	525
AclWI	GGATC	2 cut(s)	152, 532
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	3 cut(s)	423, 692, 945
AfaI	GTAC	2 cut(s)	20, 607
AfiI	CCNNNNNNNGG	2 cut(s)	547, 850
AgsI	TTSAA	3 cut(s)	245, 574, 819
Alw21I	GWGCWC	2 cut(s)	296, 745
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	152, 532
AlwNI	CAGNNNCTG	2 cut(s)	263, 767
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	2 cut(s)	38, 201
ApeKI	GCWGC	3 cut(s)	221, 466, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	2 cut(s)	714, 845
AvaI	CYCGRG	1 cut(s)	81
BanII	GRGCYC	2 cut(s)	296, 745
BbsI	GAAGAC	2 cut(s)	411, 731
Bbv12I	GWGCWC	2 cut(s)	296, 745
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	3 cut(s)	233, 453, 503
BceAI	ACGGC	1 cut(s)	174
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BcnI	CCSGG	2 cut(s)	714, 845
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	908
BfuAI	ACCTGC	1 cut(s)	905
BisI	GCNGC	3 cut(s)	222, 467, 492
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	3 cut(s)	223, 468, 493
Bme1390I	CCNGG	2 cut(s)	714, 845
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	714, 845
BmsI	GCATC	1 cut(s)	513
BpiI	GAAGAC	2 cut(s)	411, 731
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	2 cut(s)	264, 290
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	714, 845
Bsa29I	ATCGAT	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	508, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 850
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	133, 663
BseCI	ATCGAT	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	508, 651
BseGI	GGATG	4 cut(s)	354, 381, 504, 709
BseLI	CCNNNNNNNGG	2 cut(s)	547, 850
BseMII	CTCAG	7 cut(s)	60, 111, 255, 281, 315, 398, 821
BseNI	ACTGG	2 cut(s)	133, 663
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	3 cut(s)	233, 453, 503
BseYI	CCCAGC	1 cut(s)	546
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	2 cut(s)	40, 203
BshVI	ATCGAT	1 cut(s)	313
BsiHKAI	GWGCWC	2 cut(s)	296, 745
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	4 cut(s)	200, 501, 713, 845
BslFI	GGGAC	2 cut(s)	86, 456
BslI	CCNNNNNNNGG	2 cut(s)	547, 850
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	2 cut(s)	86, 456
BsnI	GGCC	2 cut(s)	40, 203
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	296, 745
Bsp143I	GATC	4 cut(s)	144, 310, 537, 696
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	40, 203
BspCNI	CTCAG	7 cut(s)	61, 110, 256, 282, 316, 397, 820
BspDI	ATCGAT	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	782
BspMI	ACCTGC	1 cut(s)	905
BspPI	GGATC	2 cut(s)	152, 532
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	133, 663
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	508, 651
BssMI	GATC	4 cut(s)	144, 310, 537, 696
BssT1I	CCWWGG	1 cut(s)	651
BstAPI	GCANNNNNTGC	2 cut(s)	32, 683
BstC8I	GCNNGC	1 cut(s)	648
BstF5I	GGATG	4 cut(s)	354, 381, 504, 709
BstFNI	CGCG	1 cut(s)	782
BstKTI	GATC	4 cut(s)	147, 313, 540, 699
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	4 cut(s)	144, 310, 537, 696
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 158, 683, 891
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	712, 843
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	3 cut(s)	233, 453, 503
BstV2I	GAAGAC	2 cut(s)	411, 731
BstXI	CCANNNNNNTGG	1 cut(s)	658
Bsu15I	ATCGAT	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	40, 203
BsuTUI	ATCGAT	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	763
BtsCI	GGATG	4 cut(s)	354, 381, 504, 709
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 126
BveI	ACCTGC	1 cut(s)	905
Cac8I	GCNNGC	1 cut(s)	648
CaiI	CAGNNNCTG	2 cut(s)	263, 767
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	38
ClaI	ATCGAT	1 cut(s)	313
CseI	GACGC	1 cut(s)	771
Csp6I	GTAC	2 cut(s)	19, 606
CspCI	CAANNNNNGTGG	2 cut(s)	150, 185
CviAII	CATG	1 cut(s)	647
CviQI	GTAC	2 cut(s)	19, 606
DpnI	GATC	4 cut(s)	146, 312, 539, 698
DpnII	GATC	4 cut(s)	144, 310, 537, 696
EaeI	YGGCCR	1 cut(s)	201
Ecl136II	GAGCTC	2 cut(s)	294, 743
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	296, 745
Eco53kI	GAGCTC	2 cut(s)	294, 743
Eco57I	CTGAAG	3 cut(s)	423, 692, 945
Eco88I	CYCGRG	1 cut(s)	81
EcoICRI	GAGCTC	2 cut(s)	294, 743
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	296, 745
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	1 cut(s)	650
FaqI	GGGAC	2 cut(s)	86, 456
FatI	CATG	1 cut(s)	646
FauNDI	CATATG	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	222, 467, 492
FokI	GGATG	4 cut(s)	341, 388, 491, 696
FriOI	GRGCYC	2 cut(s)	296, 745
Fsp4HI	GCNGC	3 cut(s)	222, 467, 492
FspBI	CTAG	1 cut(s)	908
GluI	GCNGC	3 cut(s)	222, 467, 492
GsaI	CCCAGC	1 cut(s)	550
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	40, 203
HapII	CCGG	4 cut(s)	200, 501, 713, 845
HgaI	GACGC	1 cut(s)	771
Hin1II	CATG	1 cut(s)	650
HinfI	GANTC	6 cut(s)	196, 241, 253, 764, 920, 949
HpaII	CCGG	4 cut(s)	200, 501, 713, 845
Hpy188I	TCNGA	6 cut(s)	149, 325, 403, 498, 509, 925
Hpy188III	TCNNGA	3 cut(s)	83, 193, 257
HpyAV	CCTTC	6 cut(s)	114, 211, 226, 580, 667, 848
HpyCH4IV	ACGT	2 cut(s)	525, 824
HpyCH4V	TGCA	5 cut(s)	35, 646, 686, 878, 885
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 158, 683, 891
HpySE526I	ACGT	2 cut(s)	525, 824
Hsp92II	CATG	1 cut(s)	650
Kzo9I	GATC	4 cut(s)	144, 310, 537, 696
LmnI	GCTCC	3 cut(s)	131, 149, 847
Lsp1109I	GCAGC	3 cut(s)	233, 453, 503
LweI	GCATC	1 cut(s)	513
MaeI	CTAG	1 cut(s)	908
MaeII	ACGT	2 cut(s)	525, 824
MaeIII	GTNAC	3 cut(s)	76, 691, 789
MalI	GATC	4 cut(s)	146, 312, 539, 698
MboI	GATC	4 cut(s)	144, 310, 537, 696
MboII	GAAGA	5 cut(s)	84, 416, 522, 736, 766
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	296, 745
MluCI	AATT	8 cut(s)	30, 411, 433, 578, 595, 629, 717, 732
MlyI	GAGTC	2 cut(s)	262, 943
MnlI	CCTC	8 cut(s)	106, 173, 229, 253, 259, 359, 368, 503
MseI	TTAA	3 cut(s)	552, 839, 991
MspA1I	CMGCKG	3 cut(s)	224, 546, 670
MspI	CCGG	4 cut(s)	200, 501, 713, 845
MspR9I	CCNGG	2 cut(s)	714, 845
MunI	CAATTG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	4 cut(s)	32, 158, 683, 891
NciI	CCSGG	2 cut(s)	714, 845
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	4 cut(s)	144, 310, 537, 696
NlaIII	CATG	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	650
PaeI	GCATGC	1 cut(s)	650
PaqCI	CACCTGC	1 cut(s)	905
PfeI	GAWTC	4 cut(s)	196, 241, 764, 920
PfoI	TCCNGGA	1 cut(s)	712
PkrI	GCNGC	3 cut(s)	223, 468, 493
PleI	GAGTC	2 cut(s)	261, 943
PpsI	GAGTC	2 cut(s)	261, 943
PsiI	TTATAA	2 cut(s)	272, 600
Psp124BI	GAGCTC	2 cut(s)	296, 745
Psp1406I	AACGTT	1 cut(s)	525
PspFI	CCCAGC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	38
PstNI	CAGNNNCTG	2 cut(s)	263, 767
PvuII	CAGCTG	2 cut(s)	546, 670
RsaI	GTAC	2 cut(s)	20, 607
RsaNI	GTAC	2 cut(s)	19, 606
SacI	GAGCTC	2 cut(s)	296, 745
SaqAI	TTAA	3 cut(s)	552, 839, 991
SatI	GCNGC	3 cut(s)	222, 467, 492
Sau3AI	GATC	4 cut(s)	144, 310, 537, 696
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	262, 943
ScrFI	CCNGG	2 cut(s)	714, 845
SduI	GDGCHC	2 cut(s)	296, 745
SfaNI	GCATC	1 cut(s)	513
SphI	GCATGC	1 cut(s)	650
Sse9I	AATT	8 cut(s)	30, 411, 433, 578, 595, 629, 717, 732
SsiI	CCGC	1 cut(s)	224
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	908
SstI	GAGCTC	2 cut(s)	296, 745
StyD4I	CCNGG	2 cut(s)	712, 843
StyI	CCWWGG	1 cut(s)	651
TaiI	ACGT	2 cut(s)	528, 827
TaqI	TCGA	4 cut(s)	215, 313, 800, 902
TasI	AATT	8 cut(s)	30, 411, 433, 578, 595, 629, 717, 732
TfiI	GAWTC	4 cut(s)	196, 241, 764, 920
Tru1I	TTAA	3 cut(s)	552, 839, 991
Tru9I	TTAA	3 cut(s)	552, 839, 991
TscAI	CASTG	2 cut(s)	121, 133
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	3 cut(s)	221, 466, 491
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	17, 766, 933
TspRI	CASTG	2 cut(s)	121, 133
XceI	RCATGY	1 cut(s)	650
XspI	CTAG	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.