Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006773

Physical Location & Seq

Genomic Coordinates Forward (+)

26906038 .. 26910038

Gene Structure 4001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1175600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGGAGACACTAAGGTACTTGGCAGGAATTGCAGGCCCAAGTGGTTATGGCTCAAATTCAACTGCTGAGCAAGTCACTCAAGATTGTTCTTCCTCAGTCCCTTCTCAACTCACTGCCATAATCACTGGAGCAACGTCAGGGATTGGAGCTGAAACGGCAAGAGTGCTGGCAAAGAGAGGAGTGAGGGTCGTGATTCCGGCGAGAGATTTATCGAAGGCGGCGGAAGTGAAGGATGGGATTCAAAGGGAGAGTCCACAGGCTGAGGTTATACTCTTAGAGATTGACCTGAGCTCACTCGCTTCTGTTGACAGATTTTGTTCTGAGTTCTTAGCTCTAAGACTTCCCCTCAATATCCTCATAAACAATGGTGGGATGTTTTCTCAGGCTTTGGAATATTCTGAAGACAAAATTGAGATGACATTTGCTACAAATTACTTGGGACATCATTTTTTGACAGAAAAACTGCTGGAAAAAATGGTGGAAACAGCAGCTCAGACCGGCATCCGAGGGAGAATAATCAACGTTTCTTCTGCGATCCACAGCTGGGTCAAGAGAGATGAATTCCGCTTCAACCAATTGCTCAACCCTAAGAATTATAATGGTACAAAAGCATACGCACAGTCCAAACTGTCAAACGTATTGCATGCCAAGGAACTGGCAAGACAGCTTAAGGCAAGAAATGCAAGAGTAACGATCAACGCAGTACACCCGGGAGTTGTAAAGACCGGAATTATAAGAGCTCATAAGGGCTTCATCACAGATTCTGTGTTCTTCATCGCGTCCAAGTTTCTAAAATCGACATCTCAGGGTGCTTCAACAGCTTGCTATGTTGCTTTAAGCCCGGAACTGGAAGGAGTGAGTGGGAAATACTTTGCAGACTGCAACGAGAGCGACTGCTCGAAACTAGCAAATGATGAATCTGAAGCTCATAAGTTATGGAAGCAGACTCGTCTGCTAATCCATAGACGCCTTTCCCAACCAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

331

Amino Acids

36.07

Weight (kDa)

9.2

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	39 - 179	2.4e-26	short chain dehydrogenase
KR	PF08659	39 - 158	4.3e-07	KR domain
adh_short_C2	PF13561	44 - 290	3.6e-18	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130 AT5G50130
fragaria_vesca	FvH4_5g05830 FvH4_5g05830 FvH4_5g05830
malus_domestica	MD06G1170000.v1.1 MD14G1175600.v1.1
prunus_persica	Prupe.5G169500_v2.0.a1
pyrus_communis	pycom06g15140 pycom14g14650
rosa_chinensis	RchiOBHm_Chr7g0192991
rosa_laevigata	RLG00000004303
rosa_multiflora	Rmu_sc0002040.1_g000068
rosa_roxburghii	Rroxscaffold_3G00262470
rosa_rugosa	Rorug07G0007300
rosa_samantha	Rh7AG132100 Rh7BG133000 Rh7DG134000
rosa_wichuraiana	Rw7G011270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	600, 737
AccII	CGCG	1 cut(s)	782
AciI	CCGC	3 cut(s)	221, 224, 568
AclI	AACGTT	1 cut(s)	525
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	2 cut(s)	58, 563
AcuI	CTGAAG	2 cut(s)	423, 945
AcyI	GRCGYC	1 cut(s)	970
AfaI	GTAC	3 cut(s)	20, 607, 708
AfiI	CCNNNNNNNGG	2 cut(s)	547, 850
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	4 cut(s)	63, 245, 574, 819
Alw21I	GWGCWC	2 cut(s)	296, 745
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	1 cut(s)	532
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	712
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	2 cut(s)	58, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	3 cut(s)	713, 714, 845
AvaI	CYCGRG	1 cut(s)	712
BanII	GRGCYC	2 cut(s)	296, 745
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	2 cut(s)	296, 745
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	3 cut(s)	713, 714, 845
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	908
BfrI	CTTAAG	1 cut(s)	671
BisI	GCNGC	2 cut(s)	222, 492
BlpI	GCTNAGC	1 cut(s)	69
BlsI	GCNGC	2 cut(s)	223, 493
Bme1390I	CCNGG	3 cut(s)	713, 714, 845
BmeT110I	CYCGRG	1 cut(s)	712
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	713, 714, 845
BmsI	GCATC	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	2 cut(s)	264, 290
Bpu1102I	GCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	3 cut(s)	713, 714, 845
BsaHI	GRCGYC	1 cut(s)	970
BsaJI	CCNNGG	3 cut(s)	508, 651, 712
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 850
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	3 cut(s)	133, 663, 855
BseDI	CCNNGG	3 cut(s)	508, 651, 712
BseGI	GGATG	3 cut(s)	241, 381, 504
BseLI	CCNNNNNNNGG	2 cut(s)	547, 850
BseMII	CTCAG	8 cut(s)	60, 111, 255, 281, 315, 398, 509, 821
BseNI	ACTGG	3 cut(s)	133, 663, 855
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	546
Bsh1236I	CGCG	1 cut(s)	782
BshFI	GGCC	1 cut(s)	39
BsiHKAI	GWGCWC	2 cut(s)	296, 745
BsiHKCI	CYCGRG	1 cut(s)	712
BsiSI	CCGG	5 cut(s)	200, 501, 713, 729, 845
BslFI	GGGAC	2 cut(s)	86, 456
BslI	CCNNNNNNNGG	2 cut(s)	547, 850
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	2 cut(s)	86, 456
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	712
Bsp1286I	GDGCHC	2 cut(s)	296, 745
Bsp143I	GATC	2 cut(s)	537, 696
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	3 cut(s)	221, 224, 568
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	8 cut(s)	61, 110, 256, 282, 316, 397, 508, 820
BspFNI	CGCG	1 cut(s)	782
BspPI	GGATC	1 cut(s)	532
BspTI	CTTAAG	1 cut(s)	671
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	3 cut(s)	133, 663, 855
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	3 cut(s)	508, 651, 712
BssMI	GATC	2 cut(s)	537, 696
BssNI	GRCGYC	1 cut(s)	970
BssT1I	CCWWGG	1 cut(s)	651
Bst4CI	ACNGT	2 cut(s)	624, 633
BstACI	GRCGYC	1 cut(s)	970
BstAFI	CTTAAG	1 cut(s)	671
BstAPI	GCANNNNNTGC	2 cut(s)	32, 683
BstC8I	GCNNGC	4 cut(s)	37, 171, 648, 826
BstF5I	GGATG	3 cut(s)	241, 381, 504
BstFNI	CGCG	1 cut(s)	782
BstKTI	GATC	2 cut(s)	540, 699
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	2 cut(s)	537, 696
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 158, 683, 821, 891
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	3 cut(s)	711, 712, 843
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	1 cut(s)	503
BstV2I	GAAGAC	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	763
BtsCI	GGATG	3 cut(s)	241, 381, 504
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 126
Cac8I	GCNNGC	4 cut(s)	37, 171, 648, 826
CaiI	CAGNNNCTG	1 cut(s)	767
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	38
Cfr9I	CCCGGG	1 cut(s)	712
CseI	GACGC	2 cut(s)	771, 978
Csp6I	GTAC	3 cut(s)	19, 606, 707
CviAII	CATG	1 cut(s)	647
CviQI	GTAC	3 cut(s)	19, 606, 707
DpnI	GATC	2 cut(s)	539, 698
DpnII	GATC	2 cut(s)	537, 696
EciI	GGCGGA	1 cut(s)	239
Ecl136II	GAGCTC	2 cut(s)	294, 743
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	296, 745
Eco53kI	GAGCTC	2 cut(s)	294, 743
Eco57I	CTGAAG	2 cut(s)	423, 945
Eco88I	CYCGRG	1 cut(s)	712
EcoICRI	GAGCTC	2 cut(s)	294, 743
EcoRI	GAATTC	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	296, 745
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	1 cut(s)	650
FaqI	GGGAC	2 cut(s)	86, 456
FatI	CATG	1 cut(s)	646
Fnu4HI	GCNGC	2 cut(s)	222, 492
FokI	GGATG	3 cut(s)	248, 388, 491
FriOI	GRGCYC	2 cut(s)	296, 745
Fsp4HI	GCNGC	2 cut(s)	222, 492
FspBI	CTAG	1 cut(s)	908
GluI	GCNGC	2 cut(s)	222, 492
GsaI	CCCAGC	1 cut(s)	550
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	5 cut(s)	200, 501, 713, 729, 845
HgaI	GACGC	2 cut(s)	771, 978
Hin1I	GRCGYC	1 cut(s)	970
Hin1II	CATG	1 cut(s)	650
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	6 cut(s)	196, 241, 253, 764, 920, 949
HpaII	CCGG	5 cut(s)	200, 501, 713, 729, 845
Hpy166II	GTNNAC	3 cut(s)	257, 310, 709
Hpy188I	TCNGA	5 cut(s)	325, 403, 498, 509, 925
Hpy188III	TCNNGA	3 cut(s)	83, 193, 553
Hpy8I	GTNNAC	3 cut(s)	257, 310, 709
HpyAV	CCTTC	4 cut(s)	114, 211, 226, 848
HpyCH4III	ACNGT	2 cut(s)	624, 633
HpyCH4IV	ACGT	3 cut(s)	137, 525, 639
HpyCH4V	TGCA	5 cut(s)	35, 646, 686, 878, 885
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 158, 683, 821, 891
HpySE526I	ACGT	3 cut(s)	137, 525, 639
Hsp92I	GRCGYC	1 cut(s)	970
Hsp92II	CATG	1 cut(s)	650
Kzo9I	GATC	2 cut(s)	537, 696
LmnI	GCTCC	2 cut(s)	131, 149
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	1 cut(s)	513
MaeI	CTAG	1 cut(s)	908
MaeII	ACGT	3 cut(s)	137, 525, 639
MaeIII	GTNAC	2 cut(s)	76, 691
MalI	GATC	2 cut(s)	539, 698
MboI	GATC	2 cut(s)	537, 696
MboII	GAAGA	4 cut(s)	84, 416, 522, 766
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	296, 745
MluCI	AATT	8 cut(s)	30, 58, 411, 433, 563, 578, 595, 732
MlyI	GAGTC	2 cut(s)	262, 943
MnlI	CCTC	7 cut(s)	106, 173, 180, 259, 359, 368, 503
MseI	TTAA	3 cut(s)	672, 839, 991
MspA1I	CMGCKG	1 cut(s)	546
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	5 cut(s)	200, 501, 713, 729, 845
MspR9I	CCNGG	3 cut(s)	713, 714, 845
MunI	CAATTG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	5 cut(s)	32, 158, 683, 821, 891
NciI	CCSGG	3 cut(s)	713, 714, 845
NdeII	GATC	2 cut(s)	537, 696
NlaIII	CATG	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	650
PaeI	GCATGC	1 cut(s)	650
PfeI	GAWTC	4 cut(s)	196, 241, 764, 920
PkrI	GCNGC	2 cut(s)	223, 493
PleI	GAGTC	2 cut(s)	261, 943
PpsI	GAGTC	2 cut(s)	261, 943
PsiI	TTATAA	2 cut(s)	600, 737
Psp124BI	GAGCTC	2 cut(s)	296, 745
Psp1406I	AACGTT	1 cut(s)	525
PspFI	CCCAGC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	546
RsaI	GTAC	3 cut(s)	20, 607, 708
RsaNI	GTAC	3 cut(s)	19, 606, 707
SacI	GAGCTC	2 cut(s)	296, 745
SaqAI	TTAA	3 cut(s)	672, 839, 991
SatI	GCNGC	2 cut(s)	222, 492
Sau3AI	GATC	2 cut(s)	537, 696
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	262, 943
ScrFI	CCNGG	3 cut(s)	713, 714, 845
SduI	GDGCHC	2 cut(s)	296, 745
SfaNI	GCATC	1 cut(s)	513
SmaI	CCCGGG	1 cut(s)	714
SmlI	CTYRAG	2 cut(s)	81, 671
SmoI	CTYRAG	2 cut(s)	81, 671
SphI	GCATGC	1 cut(s)	650
Sse9I	AATT	8 cut(s)	30, 58, 411, 433, 563, 578, 595, 732
SsiI	CCGC	3 cut(s)	221, 224, 568
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	908
SstI	GAGCTC	2 cut(s)	296, 745
StyD4I	CCNGG	3 cut(s)	711, 712, 843
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	624, 633
TaiI	ACGT	3 cut(s)	140, 528, 642
TaqI	TCGA	3 cut(s)	215, 800, 902
TasI	AATT	8 cut(s)	30, 58, 411, 433, 563, 578, 595, 732
TatI	WGTACW	1 cut(s)	706
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	4 cut(s)	196, 241, 764, 920
Tru1I	TTAA	3 cut(s)	672, 839, 991
Tru9I	TTAA	3 cut(s)	672, 839, 991
TscAI	CASTG	2 cut(s)	121, 133
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	5 cut(s)	17, 576, 745, 766, 933
TspMI	CCCGGG	1 cut(s)	712
TspRI	CASTG	2 cut(s)	121, 133
Vha464I	CTTAAG	1 cut(s)	671
XapI	RAATTY	2 cut(s)	58, 563
XceI	RCATGY	1 cut(s)	650
XmaI	CCCGGG	1 cut(s)	712
XspI	CTAG	1 cut(s)	908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.